Glyma.14g082800

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Report for Sequence Feature Glyma.14g082800

Feature Type:	gene_model
Chromosome:	Gm14
Start:	7191405
stop:	7193872
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.14g082800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42890.1	AT	sterol carrier protein 2	JGI	N/A	IEA
GO:0006635	GO-bp	fatty acid beta-oxidation	EnsemblGenomes	N/A	IEA
GO:0009735	GO-bp	response to cytokinin	EnsemblGenomes	N/A	IEA
GO:0009845	GO-bp	seed germination	EnsemblGenomes	N/A	IEA
GO:0046487	GO-bp	glyoxylate metabolic process	EnsemblGenomes	N/A	IEA
GO:0005777	GO-cc	peroxisome	EnsemblGenomes	N/A	IEA
GO:0032934	GO-mf	sterol binding	JGI	N/A	IEA
KOG4170	KOG	2-enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase/Peroxisomal 3-ketoacyl-CoA-thiolase, sterol-binding domain and related enzymes	JGI	N/A	IEA
PTHR10094	Panther	STEROL CARRIER PROTEIN 2 (SCP-2) FAMILY PROTEIN	JGI	N/A	IEA
PTHR10094:SF8	Panther		JGI	N/A	IEA
PF02036	PFAM	SCP-2 sterol transfer family	JGI	N/A	IEA
LYSINE-DEG2-PWY	SoyCyc9	lysine degradation II	Plant Metabolic Network		ISS
PWY-5080	SoyCyc9	very long chain fatty acid biosynthesis I	Plant Metabolic Network		ISS
PWY-5138	SoyCyc9	unsaturated, even numbered fatty acid β-oxidation	Plant Metabolic Network		ISS
PWY-7036	SoyCyc9	very long chain fatty acid biosynthesis II	Plant Metabolic Network		ISS
PWY-7601	SoyCyc9	arachidonate biosynthesis IV (8-detaturase, lower eukaryotes)	Plant Metabolic Network		ISS
GN7V-64879	SoyCyc9-rxn	3α,7α,12αtrihydroxy-5β-cholest-24-enoyl-CoA dehydratase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.14g082800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g082800 not represented in the dataset	Glyma.14g082800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.14g082800

Paralog	Evidence	Comments
Glyma.17g242300	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g082800 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma14g09100	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.14g082800

Limit To All Plant Sequences

>Glyma.14g082800.2 sequence-type=transcript locus=Glyma.14g082800 ID=Glyma.14g082800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACCTTCACACGAACTCAATAAATACGAATAACAAACCAATAAACCAAACCCAAACTGCTAGGTTTTGTTTGGTGTGACGCGCAGCGGAAGCCATGGCTGATTCTTCTTCGAACTTGAAATCCGACGCGATAATGGAGCAGATGAAGCAGCACCTCGCCACCGACTCAGGCAAACAAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGACTTTGTTAAGGTTGCCTTGGGGAAGATGAATCCACAGATTGCTTTCATGAGTGGTTAATGGATGTAGAGGTGCGATGAAGATTAAGGGAAGCTTGAGTGCTGCTCAGAAATTTACTCCAGATATCTTCCCAAAGCCTTCCAAGCTGTGAGCTGAGATGTCTGAAACTACTTGCACAAGGTTGCTAGAATTATCGTTTGCCTGCAGTCAAACAAAATAGATAGCAATCATAGCATCAAAAGCTGAGGATTATATTATATCTTTAGTTAATACATGGATCATTACTCCTAAGGTTGTAGATGGTTCATGATTTTAATATAGCTGTGAACACCGAAGGATATTTAGATACTGTTTTGCATATCTGCCATAGATTTTTATTCTACTGTGATTGGATGTTTCAAGCTTGAAAATAGTTAGTTCATCGGGCATTATTTAGAGCTACTTTTCCATTCTTTTGTCATAAATTCTCGGATGAATGCATTACTGAGCCCATACTTGTGGGATGGATGCTAGG

>Glyma.14g082800.3 sequence-type=transcript locus=Glyma.14g082800 ID=Glyma.14g082800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AACCTTCACACGAACTCAATAAATACGAATAACAAACCAATAAACCAAACCCAAACTGCTAGGTTTTGTTTGGTGTGACGCGCAGCGGAAGCCATGGCTGATTCTTCTTCGAACTTGAAATCCGACGCGATAATGGAGCAGATGAAGCAGCACCTCGCCACCGACTCAGGCAAACAAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGGTTGTTGTCTTGGCAGCCAGAGATTATTCAACAACTTTTGCAATTTTGCTACGTTGATGTTTTCTACAATCTTATTTCCATGATTCTACTTAATTTTGCCAAATTTATCATGTTCTCTGACAATACTATTGTATCATGTATGAGTATGATTATTTTGGGTTTGTATGTATTTAGGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGACTTTGTTAAGGTTGCCTTGGGGAAGATGAATCCACAGATTGCTTTCATGAGAGGTGCGATGAAGATTAAGGGAAGCTTGAGTGCTGCTCAGAAATTTACTCCAGATATCTTCCCAAAGCCTTCCAAGCTGTGAGCTGAGATGTCTGAAACTACTTGCACAAGGTTGCTAGAATTATCGTTTGCCTGCAGTCAAACAAAATAGATAGCAATCATAGCATCAAAAGCTGAGGATTATATTATATCTTTAGTTAATACATGGATCATTACTCCTAAGGTTGTAGATGGTTCATGATTTTAATATAGCTGTGAACACCGAAGGATATTTAGATACTGTTTTGCATATCTGCCATAGATTTTTATTCTACTGTGATTGGATGTTTCAAGCTTGAAAATAGTTAGTTCATCGGGCATTATTTAGAGCTACTTTTCCATTCTTTTGTCATAAATTCTCGGATGAATGCATTACTGAGCCCATACTTGTGGGATGGATGCTAGG

Coding sequences of Glyma.14g082800

Limit To All Plant Sequences

>Glyma.14g082800.1 sequence-type=CDS polypeptide=Glyma.14g082800.1.p locus=Glyma.14g082800 ID=Glyma.14g082800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGATTCTTCTTCGAACTTGAAATCCGACGCGATAATGGAGCAGATGAAGCAGCACCTCGCCACCGACTCAGGCAAACAAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGACTTTGTTAAGGTTGCCTTGGGGAAGATGAATCCACAGATTGCTTTCATGAGAGGTGCGATGAAGATTAAGGGAAGCTTGAGTGCTGCTCAGAAATTTACTCCAGATATCTTCCCAAAGCCTTCCAAGCTGTGA

>Glyma.14g082800.2 sequence-type=CDS polypeptide=Glyma.14g082800.2.p locus=Glyma.14g082800 ID=Glyma.14g082800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGATTCTTCTTCGAACTTGAAATCCGACGCGATAATGGAGCAGATGAAGCAGCACCTCGCCACCGACTCAGGCAAACAAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGGGCCATATGAAGGAGGAAAGCCTGATGCATCTTTTTCATTTAAGGACGAGGACTTTGTTAAGGTTGCCTTGGGGAAGATGAATCCACAGATTGCTTTCATGAGTGGTTAA

>Glyma.14g082800.3 sequence-type=CDS polypeptide=Glyma.14g082800.3.p locus=Glyma.14g082800 ID=Glyma.14g082800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGATTCTTCTTCGAACTTGAAATCCGACGCGATAATGGAGCAGATGAAGCAGCACCTCGCCACCGACTCAGGCAAACAAGTCACCAAAAAAATTGGACTCGTTTATCAGATTCAAATTGCTCCTAAGAAACTTGGAATCGACGAGGTCGTCTACACCGTTGATCTCAGGAAAGGAGAGGTCACTAAAGGTTGTTGTCTTGGCAGCCAGAGATTATTCAACAACTTTTGCAATTTTGCTACGTTGATGTTTTCTACAATCTTATTTCCATGA

Predicted protein sequences of Glyma.14g082800

Limit To All Plant Sequences

>Glyma.14g082800.1.p sequence-type=predicted peptide transcript=Glyma.14g082800.1 locus=Glyma.14g082800 ID=Glyma.14g082800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADSSSNLKSDAIMEQMKQHLATDSGKQVTKKIGLVYQIQIAPKKLGIDEVVYTVDLRKGEVTKGPYEGGKPDASFSFKDEDFVKVALGKMNPQIAFMRGAMKIKGSLSAAQKFTPDIFPKPSKL*

>Glyma.14g082800.2.p sequence-type=predicted peptide transcript=Glyma.14g082800.2 locus=Glyma.14g082800 ID=Glyma.14g082800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADSSSNLKSDAIMEQMKQHLATDSGKQVTKKIGLVYQIQIAPKKLGIDEVVYTVDLRKGEVTKGPYEGGKPDASFSFKDEDFVKVALGKMNPQIAFMSG*

>Glyma.14g082800.3.p sequence-type=predicted peptide transcript=Glyma.14g082800.3 locus=Glyma.14g082800 ID=Glyma.14g082800.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADSSSNLKSDAIMEQMKQHLATDSGKQVTKKIGLVYQIQIAPKKLGIDEVVYTVDLRKGEVTKGCCLGSQRLFNNFCNFATLMFSTILFP*

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