SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G47550.2 | AT | exocyst complex component sec3A | JGI | N/A | IEA |
| GO:0006887 | GO-bp | exocytosis | EnsemblGenomes | N/A | IEA |
| GO:0006893 | GO-bp | Golgi to plasma membrane transport | EnsemblGenomes | N/A | IEA |
| GO:0051601 | GO-bp | exocyst localization | EnsemblGenomes | N/A | IEA |
| GO:0000145 | GO-cc | exocyst | EnsemblGenomes | N/A | IEA |
| GO:0005886 | GO-cc | plasma membrane | EnsemblGenomes | N/A | IEA |
| GO:0005546 | GO-mf | phosphatidylinositol-4,5-bisphosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0017049 | GO-mf | GTP-Rho binding | EnsemblGenomes | N/A | IEA |
| PTHR16092 | Panther | SEC3/SYNTAXIN-RELATED | JGI | N/A | IEA |
| PTHR16092:SF13 | Panther | JGI | N/A | IEA | |
| PF09763 | PFAM | Exocyst complex component Sec3 | JGI | N/A | IEA |
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Glyma.14g078400 not represented in the dataset |
Glyma.14g078400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.17g246600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|
>Glyma.14g078400.1 sequence-type=CDS polypeptide=Glyma.14g078400.1.p locus=Glyma.14g078400 ID=Glyma.14g078400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCACAGCCAAATGTGCATGCTCTTTTAGAAAGTGAACCTTTGATGGATGAGGTGTTGCAAGGGCTTGATGCTGCAACCAGTTGTGTGGAAGATATGGATGAATGGTTAAGCATATTCAATGTAAAACTCCGGCACATGAGGGAGGATATTGCATCAATAGAAACCCGCAATAACAACCTGGAAATGCAATCAGTAAATAACAAATCTCTCATTGAAGAGCTTGATAAGCTTCTTGAGCGATTGCGTGTCCCTTCTGAGTATGCCACAAATTTGACTGGAGGTTCATTTGATGAAGCTCGAATGCTTCAAAATGTAGAAGCATGTGAATGGTTGACCAGTGCCTTGCGTGGTCTTGGAGTGCCTAATCTAGATCCTAGTTATGCAAACATGAGAACTGTTAAAGAGAAGCGTGCAGAACTTGAAAAATTAAAATCTACTTTTGTCAGGAGAGCCTCTGAATTCTTGAGAAATTATTTTGCTAGTTTGGTGGACCTCATGATAAGTGATAAAAGTTACTTTTCTCAGCGGGGGCAGTTAAAGAGGCCTGATCATGCTGACCTGCGGTACAAGTGCAGGACATATGCACGTCTTCTGCAACATTTGAAGAGTCTTGACAAGAATTGTTTGGGTCCACTGAGAAAAGCTTATTGCAGTTCTCTGAACTTGCTTCTTCGCAGGGAGGTCTGTTGCACTTCATGTTGGTTTTATTTGTTTCTTAATTGTCTGGCTTTCTTATTATGA
>Glyma.14g078400.1.p sequence-type=predicted peptide transcript=Glyma.14g078400.1 locus=Glyma.14g078400 ID=Glyma.14g078400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPQPNVHALLESEPLMDEVLQGLDAATSCVEDMDEWLSIFNVKLRHMREDIASIETRNNNLEMQSVNNKSLIEELDKLLERLRVPSEYATNLTGGSFDEARMLQNVEACEWLTSALRGLGVPNLDPSYANMRTVKEKRAELEKLKSTFVRRASEFLRNYFASLVDLMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREVCCTSCWFYLFLNCLAFLL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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