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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G39770.1 | AT | Glucose-1-phosphate adenylyltransferase family protein | JGI | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009058 | GO-bp | biosynthetic process | JGI | N/A | IEA |
| GO:0008928 | GO-mf | mannose-1-phosphate guanylyltransferase (GDP) activity | EnsemblGenomes | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016779 | GO-mf | nucleotidyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016779 | GO-mf | nucleotidyltransferase activity | JGI | N/A | IEA |
| KOG1322 | KOG | GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase | JGI | N/A | IEA |
| PTHR22572 | Panther | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE | JGI | N/A | IEA |
| PF00132 | PFAM | Bacterial transferase hexapeptide (six repeats) | JGI | N/A | IEA |
| PF00483 | PFAM | Nucleotidyl transferase | JGI | N/A | IEA |
| PWY-5659 | SoyCyc9 | GDP-mannose biosynthesis | Plant Metabolic Network | ISS | |
| PWY-882 | SoyCyc9 | L-ascorbate biosynthesis I (L-galactose pathway) | Plant Metabolic Network | ISS | |
| GN7V-51872 | SoyCyc9-rxn | mannose-1-phosphate guanylyltransferase (GDP) | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| GMP1 | mannose-1-phosphate guanylyltransferase 1-like |
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Glyma.14g065900 not represented in the dataset |
Glyma.14g065900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g250800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma14g07150 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.14g065900.1 sequence-type=CDS polypeptide=Glyma.14g065900.1.p locus=Glyma.14g065900 ID=Glyma.14g065900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAGGCATTGATTCTGGTTGGGGGGTTTGGAACAAGGCTGAGGCCACTGACACTCAGTTTTCCTAAGCCTCTTGTTGATTTTGCTAACAAACCTATGATTCTGCATCAGATAGAGGCCCTTAAGGCCATTGGAGTTACTGAGGTGGTGCTAGCCATCAACTACCAACCAGAGGTTATGTTGAATTTCTTGAAGGATTTTGAAACAAAGCTCGGCATCAAGATCACATGTTCTCAGGAAACTGAACCATTGGGAACAGCAGGTCCTCTGGCTCTTGCCAGGGATAAGCTGATAGATGACTCTGGAGAACCCTTTTTTGTTCTCAACAGTGATGTTATCAGTGAGTATCCACTCAAAGAAATGATTGAATTCCATAAAAACCATGGAGGAGAGGCTTCCATAATGGTAACCAAGGTTGACGAGCCATCAAAGTACGGCGTGGTTGTGATGGAAGAGAGCACAGGGCAGGTTGATAAATTTGTTGAAAAACCGAAATTGTTTGTTGGTAACAAAATCAATGCTGGAATTTACCTGCTGAACCCCTCTGTTTTGGATCGAATTGAACTGAGGCCCACTTCTATCGAGAAAGAGGTGTTTCCAAAGATTGCTTCCGAGAAAAAGCTATATGCAATGGTCCTGCCAGGATTTTGGATGGACATTGGACAACCGAGGGATTATATTGCTGGCCTGAGGCTTTACCTGGACTCATTGAGGAAGAAGTCATCTTCTAAGTTGGCCAGTGGCTCTCAAATTGTAGGGAATGTCATTGTGGATGAGACAGCCAAAATTGGCGAGGGATGCCTCATTGGACCTGATGTTGCTATTGGTCCTGGCTGCGTTATTGAGCAAGGTGTTAGACTCAAAAGCTGCACAATAATGCGTGGAGTCCGAGTTAAGAAGCATGCTTGTGTATCCAGCAGTATTGTTGGGTGGCATTCAACTGTTGGGCAATGGGCTCGAGTGGATAATATGACCATCCTTGGAGAAGATGTCCATGTATGTGATGAAATTTACAGCAATGGTGGTGTTGTTTTGCCGCACAAGGAGATCAAGTCAAATATTCTGAAGCCGGAGATTGTCATGTGA
>Glyma.14g065900.1.p sequence-type=predicted peptide transcript=Glyma.14g065900.1 locus=Glyma.14g065900 ID=Glyma.14g065900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKALILVGGFGTRLRPLTLSFPKPLVDFANKPMILHQIEALKAIGVTEVVLAINYQPEVMLNFLKDFETKLGIKITCSQETEPLGTAGPLALARDKLIDDSGEPFFVLNSDVISEYPLKEMIEFHKNHGGEASIMVTKVDEPSKYGVVVMEESTGQVDKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIASEKKLYAMVLPGFWMDIGQPRDYIAGLRLYLDSLRKKSSSKLASGSQIVGNVIVDETAKIGEGCLIGPDVAIGPGCVIEQGVRLKSCTIMRGVRVKKHACVSSSIVGWHSTVGQWARVDNMTILGEDVHVCDEIYSNGGVVLPHKEIKSNILKPEIVM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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