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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G36280.1 | AT | L-Aspartase-like family protein | JGI | N/A | IEA |
| GO:0006164 | GO-bp | purine nucleotide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006188 | GO-bp | IMP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0006188 | GO-bp | IMP biosynthetic process | JGI | N/A | IEA |
| GO:0006189 | GO-bp | 'de novo' IMP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009152 | GO-bp | purine ribonucleotide biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0044208 | GO-bp | 'de novo' AMP biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004018 | GO-mf | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity | EnsemblGenomes | N/A | IEA |
| GO:0004018 | GO-mf | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity | JGI | N/A | IEA |
| GO:0016829 | GO-mf | lyase activity | EnsemblGenomes | N/A | IEA |
| GO:0070626 | GO-mf | (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity | EnsemblGenomes | N/A | IEA |
| KOG2700 | KOG | Adenylosuccinate lyase | JGI | N/A | IEA |
| PTHR11444 | Panther | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE | JGI | N/A | IEA |
| PTHR11444:SF2 | Panther | ADENYLOSUCCINATE LYASE | JGI | N/A | IEA |
| PF00206 | PFAM | Lyase | JGI | N/A | IEA |
| PF08328 | PFAM | Adenylosuccinate lyase C-terminal | JGI | N/A | IEA |
| PWY-6124 | SoyCyc9 | inosine-5'-phosphate biosynthesis II | Plant Metabolic Network | ISS | |
| PWY-7219 | SoyCyc9 | adenosine ribonucleotides de novo biosynthesis | Plant Metabolic Network | ISS | |
| PWY-7229 | SoyCyc9 | superpathway of adenosine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| PWY-841 | SoyCyc9 | superpathway of purine nucleotides de novo biosynthesis I | Plant Metabolic Network | ISS | |
| GN7V-54955 | SoyCyc9-rxn | adenylosuccinate lyase | Plant Metabolic Network | ISS |
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Glyma.14g062500 not represented in the dataset |
Glyma.14g062500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g254000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma14g06780 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.14g062500.1 sequence-type=CDS polypeptide=Glyma.14g062500.1.p locus=Glyma.14g062500 ID=Glyma.14g062500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAGTTCGCGGCACTCTCTAACGCTACCCAACTTGGGGGCTTCAACCCCCTCAGAACCAACCTTCAAAGTTCTCTTCCTTTTCGGCATGCTTCTTTCCCTTCTTCCTCTCGCAGAGATTGCTCATGCAAAGCCCTTCTCAGCACCCGCACACCCACCTCTACCCACAACATGTTTGGACCCCATTCCACCGATTTTGAGCTCTCTGCTTTGACGGCTCTGTCCCCATTGGATGGTCGTTATTGGAGCAAAGTTAAGGAACTTGCTCCTTTTTTGAGTGAATATGGCTTAATCTACTTTCGGGTTCTTGTTGAGATAAAATGGTTGCTGCAGCTGTCTGTAATTCCTGAAATTGTTGAGGTTCCCAGTTTCAGTGACGGTGCTAAATCTTTCTTACAAGGTCTGATTGATGACTTTAGTGTTGAGGATGCCTCGGAGGTTAAAAACATTGAGAGGGTCACGAATCATGATGTGAAAGCGGTGGAGTACTTCTTGAAACAGAAGTGTCAATCCAATGCTGAAGTGGCTAAGGTGCTTGAGTTTTTCCACTTTGCTTGCACATCTGAGGATATAAATAATCTTGCCCATGCCTTGATGCTGAAGGAAACAATGAATTCTGTCATGTTTCCTGTCATGGATAAAATAATGATTGCTTTGTGTGACGTGGCTAAAGATAATGCGGATGTTCCTATGCTTTCTCGCACTCATGGACAGCCAGCTTCACCAACTACTTTGGGAAAGGAAATGGCGATCTTTGCTGCAAGATTAAGCAGAGAAAGGAAAGATCTGTCTCAGGTTGAGATATTGGGGAAATTTGCTGGTGCAGTTGGAAATTACAATGCACATGTTGTTGCATATCCCAATGTTAACTGGCCTCACATTGCAGAACAGTTTGTACACTCTCTTGGATTAAGTTTTAATCCTTACGTTGCTCAGATTGAAACTCATGACTACATGGCAAAGCTTTTTCATTCGCTCATCCAGTTCAATAATATATTAATCGATTTTGATAGAGATGTGTGGGGCTATATATCTTTGGGTTACTTTAAGCAGACCACTAAGGCTGGGGAGATTGGGTCATCAACTATGCCTCACAAAGTGAATCCTATTGATTTTGAGAACAGCGAAGGTAATCTAGGTGTAGCTAATGGAGGTCTGTCTCATCTAAGCATGAAGTTGCCGATTTCACGTTGGCAGAGGGACTTGACTGATTCAACTGTCTTAAGGAACATGGGTATAGGTATAGGTCATTCTCTTCTTGCCTACAAAAGCACACTTCAAGGAATAGGGAAGCTTCAGGTTAATGAAGCTCGCTTGAGTGAAGACTTGAACCAGTGCTGGGAGGTGCTTGCTGAACCAATTCAGACTGTTATGCGAAGATATGGTGTTCCTGAGCCTTATGAGAAGTTAAAAGAACTAACCAGAGGAAGAGCAGTTACCAAAGAGAGCATAAGAGATTTCATTGAAGGCTTAGATATTCCAGAAGAAGCAAAGAATAATCTGTTGAAGTTAACACCTGATACTTATGTTGGAGCAGCTGTTGAATTGGCTAGAACAGTGGAAAATGTGGTTAATACTGTGATTGGAATAAAGATCTAG
>Glyma.14g062500.1.p sequence-type=predicted peptide transcript=Glyma.14g062500.1 locus=Glyma.14g062500 ID=Glyma.14g062500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEFAALSNATQLGGFNPLRTNLQSSLPFRHASFPSSSRRDCSCKALLSTRTPTSTHNMFGPHSTDFELSALTALSPLDGRYWSKVKELAPFLSEYGLIYFRVLVEIKWLLQLSVIPEIVEVPSFSDGAKSFLQGLIDDFSVEDASEVKNIERVTNHDVKAVEYFLKQKCQSNAEVAKVLEFFHFACTSEDINNLAHALMLKETMNSVMFPVMDKIMIALCDVAKDNADVPMLSRTHGQPASPTTLGKEMAIFAARLSRERKDLSQVEILGKFAGAVGNYNAHVVAYPNVNWPHIAEQFVHSLGLSFNPYVAQIETHDYMAKLFHSLIQFNNILIDFDRDVWGYISLGYFKQTTKAGEIGSSTMPHKVNPIDFENSEGNLGVANGGLSHLSMKLPISRWQRDLTDSTVLRNMGIGIGHSLLAYKSTLQGIGKLQVNEARLSEDLNQCWEVLAEPIQTVMRRYGVPEPYEKLKELTRGRAVTKESIRDFIEGLDIPEEAKNNLLKLTPDTYVGAAVELARTVENVVNTVIGIKI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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