Glyma.14g053300

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Report for Sequence Feature Glyma.14g053300

Feature Type:	gene_model
Chromosome:	Gm14
Start:	4212867
stop:	4218706
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.14g053300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48220.1	AT	Aldolase-type TIM barrel family protein	JGI	N/A	IEA
GO:0006568	GO-bp	tryptophan metabolic process	EnsemblGenomes	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0004425	GO-mf	indole-3-glycerol-phosphate synthase activity	EnsemblGenomes	N/A	IEA
GO:0004425	GO-mf	indole-3-glycerol-phosphate synthase activity	JGI	N/A	IEA
KOG4201	KOG	Anthranilate synthase component II	JGI	N/A	IEA
PTHR22854	Panther	TRYPTOPHAN BIOSYNTHESIS PROTEIN	JGI	N/A	IEA
PTHR22854:SF2	Panther	TRYPTOPHAN BIOSYNTHESIS PROTEIN TRPCF	JGI	N/A	IEA
PF00218	PFAM	Indole-3-glycerol phosphate synthase	JGI	N/A	IEA
TRPSYN-PWY	SoyCyc9	L-tryptophan biosynthesis	Plant Metabolic Network		ISS
GN7V-63150	SoyCyc9-rxn	indole-3-glycerol-phosphate synthase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.14g053300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g053300 not represented in the dataset	Glyma.14g053300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.14g053300

Paralog	Evidence	Comments
Glyma.02g259000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g053300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma14g05810	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.14g053300

Limit To All Plant Sequences

>Glyma.14g053300.2 sequence-type=transcript locus=Glyma.14g053300 ID=Glyma.14g053300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAGGATCTCTTATTAAGTTAAAATAACTTCAAGCTCGGTTGATCCAAGCCAGCATAGCAAAACATTTGATAGAAGAGAGGCAAATTCATACTGTAAAGTTAAATACTTCGCGGTGAAAGAGAAAAAAAGGCACAGACCAAAATCAATGTAATGCCCTTCAATTTTAATTTTGTGCCATTTTTAGCTCTTTACATGTGCCAATCCAATCCCAGCCGTGGTACATTCTCTTGGGGCCAGAAAAACCATGAACACGCCGTGGCGTCGGAATTGAATGCGCGCGTGCGCACGTGTCGAACGCTACAACAATTTTCTTCTCCAATTCAATACTAGTACTATAACATAGACGATTAGACGGTGTGTTCTTCTTTTAAACCCTTGTTTCACTTTCCGTTTCATCTTTCTTTTTTGTTGCTCAGCAATCCCTCCCATTTTTTTTCCTTCAATCTGCTTCAATGGAAGGTTTGGCTTCCCTCAAGGCTCCCTTTCCGGCCACCCCATTTCTCTCTTCCAGACCCAGAACCTCTATTCTTCCATCCCAAGCCAGTTTTCGTAAAAGAAGCTCCTTTTTATCCTTTTCTGTTCATGCCCAGGTGGAGTCTGATGATGGTTCAGCTGTAGTAGCCACATCTGGTGAATCTGTGACAGAGGTTCTGAAAATTAAGGAGTGGGAGGTGGGAATGTTCCAAAATGAGGTTGCAGCTAGCCAGGGTATAAGAATAAGGAGAAGGCCTCCATCTGGACCCCCTTTGCATTATGTAGGACCATTTCAATTCAGGTTGCAGAATGAGGGCAATACGCCCCGGAACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAAGGCAGCCAACGAACGAACTGGACTTCCAGGGTTGATTGCTGAAGTGAAGAAGGCATCACCAAGTAGAGGTATCTTGAGAGAAGACTTTGACCCAGTTGAAATTGCTAAGGCTTATGAGAAAGGTGGAGCAGCATGTCTAAGTGTTTTGACAGATGAAAAGTATTTTAAGGGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGTGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTATGCTCGAACTAAAGGTGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATAGAGGGGATTGAGCTTATTGGCATTAACAACCGCAATCTTGCTTTTCTTTTTGGGGATTGCAGAAACATTTGAGTTGGATATCAGCATCACAAAGAAACTTCTTGAAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATTATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGAAGTGAGCTATATTTCTTGAGATATAAGCTTTTGAGATGACAGATTTTGCTCAGGTTAATGATTTGATACCTTCGACCTTTGCTTGTACCAAATTATCAAAATCTTACCAGTAGCAAATATGTACCAAAATAAACTCTTATTGTTTAATAATACTTTGCAACTAAATGATATCATTTTGAGATAATAGTTTGGCGACAATTTGTCTGTGTCCTTAACTTTGCATTGAATCTCAATCCTTCATCTTGTAAAATCATA

>Glyma.14g053300.3 sequence-type=transcript locus=Glyma.14g053300 ID=Glyma.14g053300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAGGATCTCTTATTAAGTTAAAATAACTTCAAGCTCGGTTGATCCAAGCCAGCATAGCAAAACATTTGATAGAAGAGAGGCAAATTCATACTGTAAAGTTAAATACTTCGCGGTGAAAGAGAAAAAAAGGCACAGACCAAAATCAATGTAATGCCCTTCAATTTTAATTTTGTGCCATTTTTAGCTCTTTACATGTGCCAATCCAATCCCAGCCGTGGTACATTCTCTTGGGGCCAGAAAAACCATGAACACGCCGTGGCGTCGGAATTGAATGCGCGCGTGCGCACGTGTCGAACGCTACAACAATTTTCTTCTCCAATTCAATACTAGTACTATAACATAGACGATTAGACGGTTTGGCTTCCCTCAAGGCTCCCTTTCCGGCCACCCCATTTCTCTCTTCCAGACCCAGAACCTCTATTCTTCCATCCCAAGCCAGTTTTCGTAAAAGAAGCTCCTTTTTATCCTTTTCTGTTCATGCCCAGGTGGAGTCTGATGATGGTTCAGCTGTAGTAGCCACATCTGGTGAATCTGTGACAGAGGTTCTGAAAATTAAGGAGTGGGAGGTGGGAATGTTCCAAAATGAGGTTGCAGCTAGCCAGGGTATAAGAATAAGGAGAAGGCCTCCATCTGGACCCCCTTTGCATTATGTAGGACCATTTCAATTCAGGTTGCAGAATGAGGGCAATACGCCCCGGAACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAAGGCAGCCAACGAACGAACTGGACTTCCAGGGTTGATTGCTGAAGTGAAGAAGGCATCACCAAGTAGAGGTATCTTGAGAGAAGACTTTGACCCAGTTGAAATTGCTAAGGCTTATGAGAAAGGTGGAGCAGCATGTCTAAGTGTTTTGACAGATGAAAAGTATTTTAAGGGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGTGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTATGCTCGAACTAAAGGTGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATAGAGGGGATTGAGCTTATTGGCATTAACAACCGCAATCTTGAAACATTTGAGTTGGATATCAGCATCACAAAGAAACTTCTTGAAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATTATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGAAGTGAGCTATATTTCTTGAGATATAAGCTTTTGAGATGACAGATTTTGCTCAGGTTAATGATTTGATACCTTCGACCTTTGCTTGTACCAAATTATCAAAATCTTACCAGTAGCAAATATGTACCAAAATAAACTCTTATTGTTTAATAATACTTTGCAACTAAATGATATCATTTTGAGATAATAGTTTGGCGACAATTTGTCTGTGTCCTTAACTTTGCATTGAATCTCAATCCTTCATCTTGTAAAATCATA

Coding sequences of Glyma.14g053300

Limit To All Plant Sequences

>Glyma.14g053300.1 sequence-type=CDS polypeptide=Glyma.14g053300.1.p locus=Glyma.14g053300 ID=Glyma.14g053300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTTTGGCTTCCCTCAAGGCTCCCTTTCCGGCCACCCCATTTCTCTCTTCCAGACCCAGAACCTCTATTCTTCCATCCCAAGCCAGTTTTCGTAAAAGAAGCTCCTTTTTATCCTTTTCTGTTCATGCCCAGGTGGAGTCTGATGATGGTTCAGCTGTAGTAGCCACATCTGGTGAATCTGTGACAGAGGTTCTGAAAATTAAGGAGTGGGAGGTGGGAATGTTCCAAAATGAGGTTGCAGCTAGCCAGGGTATAAGAATAAGGAGAAGGCCTCCATCTGGACCCCCTTTGCATTATGTAGGACCATTTCAATTCAGGTTGCAGAATGAGGGCAATACGCCCCGGAACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAAGGCAGCCAACGAACGAACTGGACTTCCAGGGTTGATTGCTGAAGTGAAGAAGGCATCACCAAGTAGAGGTATCTTGAGAGAAGACTTTGACCCAGTTGAAATTGCTAAGGCTTATGAGAAAGGTGGAGCAGCATGTCTAAGTGTTTTGACAGATGAAAAGTATTTTAAGGGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGTGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTATGCTCGAACTAAAGGTGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATAGAGGGGATTGAGCTTATTGGCATTAACAACCGCAATCTTGAAACATTTGAGTTGGATATCAGCATCACAAAGAAACTTCTTGAAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATTATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGA

>Glyma.14g053300.2 sequence-type=CDS polypeptide=Glyma.14g053300.2.p locus=Glyma.14g053300 ID=Glyma.14g053300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGGTTTGGCTTCCCTCAAGGCTCCCTTTCCGGCCACCCCATTTCTCTCTTCCAGACCCAGAACCTCTATTCTTCCATCCCAAGCCAGTTTTCGTAAAAGAAGCTCCTTTTTATCCTTTTCTGTTCATGCCCAGGTGGAGTCTGATGATGGTTCAGCTGTAGTAGCCACATCTGGTGAATCTGTGACAGAGGTTCTGAAAATTAAGGAGTGGGAGGTGGGAATGTTCCAAAATGAGGTTGCAGCTAGCCAGGGTATAAGAATAAGGAGAAGGCCTCCATCTGGACCCCCTTTGCATTATGTAGGACCATTTCAATTCAGGTTGCAGAATGAGGGCAATACGCCCCGGAACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAAGGCAGCCAACGAACGAACTGGACTTCCAGGGTTGATTGCTGAAGTGAAGAAGGCATCACCAAGTAGAGGTATCTTGAGAGAAGACTTTGACCCAGTTGAAATTGCTAAGGCTTATGAGAAAGGTGGAGCAGCATGTCTAAGTGTTTTGACAGATGAAAAGTATTTTAAGGGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGTGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTATGCTCGAACTAAAGGTGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATAGAGGGGATTGAGCTTATTGGCATTAACAACCGCAATCTTGCTTTTCTTTTTGGGGATTGCAGAAACATTTGA

>Glyma.14g053300.3 sequence-type=CDS polypeptide=Glyma.14g053300.3.p locus=Glyma.14g053300 ID=Glyma.14g053300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCCAAAATGAGGTTGCAGCTAGCCAGGGTATAAGAATAAGGAGAAGGCCTCCATCTGGACCCCCTTTGCATTATGTAGGACCATTTCAATTCAGGTTGCAGAATGAGGGCAATACGCCCCGGAACATTTTGGAAGAGATTGTGTGGAATAAGGACACAGAAGTCTCACAGCTTAAAGAAAGAAAACCCCTTGGCGTGCTGAAGAAAGCTCTTGAAAATGCACCTCCTGCTAGGGATTTTATTGGTGCTCTAAAGGCAGCCAACGAACGAACTGGACTTCCAGGGTTGATTGCTGAAGTGAAGAAGGCATCACCAAGTAGAGGTATCTTGAGAGAAGACTTTGACCCAGTTGAAATTGCTAAGGCTTATGAGAAAGGTGGAGCAGCATGTCTAAGTGTTTTGACAGATGAAAAGTATTTTAAGGGAAGCTTTGAAAATCTTGAGGCAATAAGAAAGGCTGGCATAAAGTGCCCTTTGTTGTGCAAAGAATTCATCATAGATGCATGGCAACTCTACTATGCTCGAACTAAAGGTGCAGATGCAGTCCTTTTAATTGCTGCTGTTTTGCCTGATCTTGACATCAAATACATGATTAAGATATGCAAATTACTCGGATTGACTGCGCTTGTTGAGGTTCATGATGAGAGGGAATTTGATCGTGTTCTTGCAATAGAGGGGATTGAGCTTATTGGCATTAACAACCGCAATCTTGAAACATTTGAGTTGGATATCAGCATCACAAAGAAACTTCTTGAAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATTATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCTATATTGGTTGGAGAGTCTATTGTAAAACAAAGTGATCCTGGAAAGGGAATCAGCAATCTCTTTGGCAAAGATATCTCTTTGGGTTGA

Predicted protein sequences of Glyma.14g053300

Limit To All Plant Sequences

>Glyma.14g053300.1.p sequence-type=predicted peptide transcript=Glyma.14g053300.1 locus=Glyma.14g053300 ID=Glyma.14g053300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGLASLKAPFPATPFLSSRPRTSILPSQASFRKRSSFLSFSVHAQVESDDGSAVVATSGESVTEVLKIKEWEVGMFQNEVAASQGIRIRRRPPSGPPLHYVGPFQFRLQNEGNTPRNILEEIVWNKDTEVSQLKERKPLGVLKKALENAPPARDFIGALKAANERTGLPGLIAEVKKASPSRGILREDFDPVEIAKAYEKGGAACLSVLTDEKYFKGSFENLEAIRKAGIKCPLLCKEFIIDAWQLYYARTKGADAVLLIAAVLPDLDIKYMIKICKLLGLTALVEVHDEREFDRVLAIEGIELIGINNRNLETFELDISITKKLLEGERGKIIHERGIIMVGESGLFTPDDIAYVQEAGVKAILVGESIVKQSDPGKGISNLFGKDISLG*

>Glyma.14g053300.2.p sequence-type=predicted peptide transcript=Glyma.14g053300.2 locus=Glyma.14g053300 ID=Glyma.14g053300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEGLASLKAPFPATPFLSSRPRTSILPSQASFRKRSSFLSFSVHAQVESDDGSAVVATSGESVTEVLKIKEWEVGMFQNEVAASQGIRIRRRPPSGPPLHYVGPFQFRLQNEGNTPRNILEEIVWNKDTEVSQLKERKPLGVLKKALENAPPARDFIGALKAANERTGLPGLIAEVKKASPSRGILREDFDPVEIAKAYEKGGAACLSVLTDEKYFKGSFENLEAIRKAGIKCPLLCKEFIIDAWQLYYARTKGADAVLLIAAVLPDLDIKYMIKICKLLGLTALVEVHDEREFDRVLAIEGIELIGINNRNLAFLFGDCRNI*

>Glyma.14g053300.3.p sequence-type=predicted peptide transcript=Glyma.14g053300.3 locus=Glyma.14g053300 ID=Glyma.14g053300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFQNEVAASQGIRIRRRPPSGPPLHYVGPFQFRLQNEGNTPRNILEEIVWNKDTEVSQLKERKPLGVLKKALENAPPARDFIGALKAANERTGLPGLIAEVKKASPSRGILREDFDPVEIAKAYEKGGAACLSVLTDEKYFKGSFENLEAIRKAGIKCPLLCKEFIIDAWQLYYARTKGADAVLLIAAVLPDLDIKYMIKICKLLGLTALVEVHDEREFDRVLAIEGIELIGINNRNLETFELDISITKKLLEGERGKIIHERGIIMVGESGLFTPDDIAYVQEAGVKAILVGESIVKQSDPGKGISNLFGKDISLG*

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