Glyma.14g040400

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Report for Sequence Feature Glyma.14g040400

Feature Type:	gene_model
Chromosome:	Gm14
Start:	3025220
stop:	3031580
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.14g040400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26970.1	AT	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	JGI	N/A	IEA
GO:0090305	GO-bp	nucleic acid phosphodiester bond hydrolysis	EnsemblGenomes	N/A	IEA
GO:0090503	GO-bp	RNA phosphodiester bond hydrolysis, exonucleolytic	EnsemblGenomes	N/A	IEA
GO:0005739	GO-cc	mitochondrion	EnsemblGenomes	N/A	IEA
GO:0000175	GO-mf	3'-5'-exoribonuclease activity	EnsemblGenomes	N/A	IEA
GO:0003676	GO-mf	nucleic acid binding	EnsemblGenomes	N/A	IEA
KOG3242	KOG	Oligoribonuclease (3'->5' exoribonuclease)	JGI	N/A	IEA
PTHR11046	Panther	OLIGORIBONUCLEASE, MITOCHONDRIAL	JGI	N/A	IEA
PF00929	PFAM	Exonuclease	JGI	N/A	IEA

Expression Patterns of Glyma.14g040400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g040400 not represented in the dataset	Glyma.14g040400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.14g040400

Paralog	Evidence	Comments
Glyma.02g275700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g040400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma14g04450	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.14g040400

Limit To All Plant Sequences

>Glyma.14g040400.2 sequence-type=transcript locus=Glyma.14g040400 ID=Glyma.14g040400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAAAGAGTTTgaagagaaagaaagaaagaaacagagagagaaatggagaaaCTAGCAAATTCATTTTCAGTGTTAGAACTCGACGCCGACGATAGCCATGTTCCCACCACTGCCGATATTAGTGACAAGAGGGTTAATGCCGACGTTGACATTGTACCAGTAAAAAGCGAGAAACAAAATCAAGAAAATCCAGTGACTCCTTCGTGTGAATACAAGTTACCTCTTGTGTGGATTGACTTGGAAATGACTGGCTTAAATATTGAAGTGGACAGAATATTGGAGATTGCTTGTATAATTACAGATGGAAATTTAACCAAAACAGTGGAGGGTCCTGATTTGGTCATCCATCAAACCAAGGAGTGCCTTGACAGGATGGGAGAATGGTGTCAAAGTCATCATGCAGCTAGTGGGTTGACAAAAAAGGTGCTAAAAAGTACAATAAGTGAAGGAGAAGCTGAAGAGCAGGTTATTGAATTTGTTAAGAGATATGTTAATGTTGGTTCGCACACACCTCACTTGGCAGGAAATTCAATATATGTTGATTTTCAATTTCTGAAGAAATACATGCCAAAATTGGCAAGTCTCTTCTCTCATGTACTTGTTGATGTTAGTAGTGTTAAAGCTCTCTGCATTCGCTGGTATCCCAAAGAAGAGAGCACCTTCAAAATTAAACAGACACAGAGCTTTGGATGACATTAGAGAAAGCATTGAAGAACTTAGATACTACAAGGCAAATATTTTTAAGCCCAAGTCCAGAAAGTCATAGGGATGCAGAGAAATCAGCGTGCGAATGTTGATGGGCAGGTTTTCAGGTCAAGTGTAAAATCTCATTGTTATGGAGGGTTTGCGCTGGGTAAATGGCTCGTGATTTTGTATAAAGTGTAGTTACTGCAAAATCATATTTAAATTTGTACTGAAAACCATCATGTGCAAGTTAAATTGAGCTTCAACTCCATTGTCCATTAAAGAAAGAAAAAGTAAAGGTAATTGTTGATTACAATGCCCAAAGAAATGTTACCTACTAATGTTGTGTTTGATTTTATGTTGAACAATTAATTCTTACTTCAAAATTAATTTTAGATGAATTTTCAC

Coding sequences of Glyma.14g040400

Limit To All Plant Sequences

>Glyma.14g040400.1 sequence-type=CDS polypeptide=Glyma.14g040400.1.p locus=Glyma.14g040400 ID=Glyma.14g040400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAACTAGCAAATTCATTTTCAGTGTTAGAACTCGACGCCGACGATAGCCATGTTCCCACCACTGCCGATATTAGTGACAAGAGGGTTAATGCCGACGTTGACATTGTACCAGTAAAAAGCGAGAAACAAAATCAAGAAAATCCAGTGACTCCTTCGTGTGAATACAAGTTACCTCTTGTGTGGATTGACTTGGAAATGACTGGCTTAAATATTGAAGTGGACAGAATATTGGAGATTGCTTGTATAATTACAGATGGAAATTTAACCAAAACAGTGGAGGGTCCTGATTTGGTCATCCATCAAACCAAGGAGTGCCTTGACAGGATGGGAGAATGGTGTCAAAGTCATCATGCAGCTAGTGGGTTGACAAAAAAGGTGCTAAAAAGTACAATAAGTGAAGGAGAAGCTGAAGAGCAGGTTATTGAATTTGTTAAGAGATATGTTAATGTTGGTTCGCACACACCTCACTTGGCAGGAAATTCAATATATGTTGATTTTCAATTTCTGAAGAAATACATGCCAAAATTGGCAAGTCTCTTCTCTCATGTACTTGTTGATGTTAGTAGTGTTAAAGCTCTCTGCATTCGCTGGTATCCCAAAGATCAGAAGAGAGCACCTTCAAAATTAAACAGACACAGAGCTTTGGATGACATTAGAGAAAGCATTGAAGAACTTAGATACTACAAGGCAAATATTTTTAAGCCCAAGTCCAGAAAGTCATAG

>Glyma.14g040400.2 sequence-type=CDS polypeptide=Glyma.14g040400.2.p locus=Glyma.14g040400 ID=Glyma.14g040400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAAACTAGCAAATTCATTTTCAGTGTTAGAACTCGACGCCGACGATAGCCATGTTCCCACCACTGCCGATATTAGTGACAAGAGGGTTAATGCCGACGTTGACATTGTACCAGTAAAAAGCGAGAAACAAAATCAAGAAAATCCAGTGACTCCTTCGTGTGAATACAAGTTACCTCTTGTGTGGATTGACTTGGAAATGACTGGCTTAAATATTGAAGTGGACAGAATATTGGAGATTGCTTGTATAATTACAGATGGAAATTTAACCAAAACAGTGGAGGGTCCTGATTTGGTCATCCATCAAACCAAGGAGTGCCTTGACAGGATGGGAGAATGGTGTCAAAGTCATCATGCAGCTAGTGGGTTGACAAAAAAGGTGCTAAAAAGTACAATAAGTGAAGGAGAAGCTGAAGAGCAGGTTATTGAATTTGTTAAGAGATATGTTAATGTTGGTTCGCACACACCTCACTTGGCAGGAAATTCAATATATGTTGATTTTCAATTTCTGAAGAAATACATGCCAAAATTGGCAAGTCTCTTCTCTCATGTACTTGTTGATGTTAGTAGTGTTAAAGCTCTCTGCATTCGCTGGTATCCCAAAGAAGAGAGCACCTTCAAAATTAAACAGACACAGAGCTTTGGATGA

Predicted protein sequences of Glyma.14g040400

Limit To All Plant Sequences

>Glyma.14g040400.1.p sequence-type=predicted peptide transcript=Glyma.14g040400.1 locus=Glyma.14g040400 ID=Glyma.14g040400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKLANSFSVLELDADDSHVPTTADISDKRVNADVDIVPVKSEKQNQENPVTPSCEYKLPLVWIDLEMTGLNIEVDRILEIACIITDGNLTKTVEGPDLVIHQTKECLDRMGEWCQSHHAASGLTKKVLKSTISEGEAEEQVIEFVKRYVNVGSHTPHLAGNSIYVDFQFLKKYMPKLASLFSHVLVDVSSVKALCIRWYPKDQKRAPSKLNRHRALDDIRESIEELRYYKANIFKPKSRKS*

>Glyma.14g040400.2.p sequence-type=predicted peptide transcript=Glyma.14g040400.2 locus=Glyma.14g040400 ID=Glyma.14g040400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEKLANSFSVLELDADDSHVPTTADISDKRVNADVDIVPVKSEKQNQENPVTPSCEYKLPLVWIDLEMTGLNIEVDRILEIACIITDGNLTKTVEGPDLVIHQTKECLDRMGEWCQSHHAASGLTKKVLKSTISEGEAEEQVIEFVKRYVNVGSHTPHLAGNSIYVDFQFLKKYMPKLASLFSHVLVDVSSVKALCIRWYPKEESTFKIKQTQSFG*

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