SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.14g027200

Feature Type:gene_model
Chromosome:Gm14
Start:1967656
stop:1971891
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g027200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G58780.1AT K-box region and MADS-box transcription factor family protein JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PTHR11945Panther MADS BOX PROTEIN JGI N/AIEA
PTHR11945:SF19Panther JGI N/AIEA
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI N/AIEA

Proteins Associated with Glyma.14g027200
LocusGene SymbolProtein Name
AGL1 agamous-like MADS-box protein AGL1

Expression Patterns of Glyma.14g027200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g027200 not represented in the dataset
Glyma.14g027200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.



Transcripts of Glyma.14g027200
>Glyma.14g027200.2 sequence-type=transcript locus=Glyma.14g027200 ID=Glyma.14g027200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAATTCATTGAGCATGAAAGTTGACAGGTGAAATCCCAAACCCCTTCTCACTATACCCTTTTTCTTTTATTCTCCAAATATTACACAAGGAGTTACTACCAAATTATTATTTTCAGTACTGAGAGTTGGAGGGTCTATTTTCTGTCCATAAATACCTGTCTCATACGCCATCTCACTTCTATATTTTGCAACATTTTCTCCTCACTTGTTGCATAACACCAAAGAACTACAAATAGTTCTCATTGCATAGCCATAGATGGAATTTCCCAACGAAGCAATACCAGAAGGGTGTTCACAGAAGAAAACGGGAAGGGGGAAAATAGAAATCAAGCGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAACGCCGTAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG
Coding sequences of Glyma.14g027200
>Glyma.14g027200.1 sequence-type=CDS polypeptide=Glyma.14g027200.1.p locus=Glyma.14g027200 ID=Glyma.14g027200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTTCCCAACGAAGCAATACCAGAAGGGTGTTCACAGAAGAAAACGGGAAGGGGGAAAATAGAAATCAAGCGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAACGCCGTAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG

>Glyma.14g027200.2 sequence-type=CDS polypeptide=Glyma.14g027200.2.p locus=Glyma.14g027200 ID=Glyma.14g027200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAATTTCCCAACGAAGCAATACCAGAAGGGTGTTCACAGAAGAAAACGGGAAGGGGGAAAATAGAAATCAAGCGGATCGAGAACACAACGAATAGGCAAGTTACCTTCTGCAAACGCCGTAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACGATCGATAGGTACAAGAAAGCATGTGCTGCCTCCACAAATCCAGAATCTGTCTCTGAAGCTAATACACAG
Predicted protein sequences of Glyma.14g027200
>Glyma.14g027200.1.p sequence-type=predicted peptide transcript=Glyma.14g027200.1 locus=Glyma.14g027200 ID=Glyma.14g027200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFPNEAIPEGCSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASTNPESVSEANTQ

>Glyma.14g027200.2.p sequence-type=predicted peptide transcript=Glyma.14g027200.2 locus=Glyma.14g027200 ID=Glyma.14g027200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEFPNEAIPEGCSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASTNPESVSEANTQ






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo