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Report for Sequence Feature Glyma.14g023000

Feature Type:gene_model
Chromosome:Gm14
Start:1630530
stop:1631856
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.14g023000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G38460.1AT geranylgeranyl reductase JGI N/AIEA
GO:0008299GO-bp isoprenoid biosynthetic process EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0004659GO-mf prenyltransferase activity EnsemblGenomesN/AIEA
PTHR12001Panther GERANYLGERANYL PYROPHOSPHATE SYNTHASE JGI N/AIEA
PTHR12001:SF8Panther JGI N/AIEA
PWY-5120SoyCyc9 geranylgeranyl diphosphate biosynthesis Plant Metabolic Network ISS
PWY-5121SoyCyc9 superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) Plant Metabolic Network ISS
PWY-5863SoyCyc9 superpathway of phylloquinol biosynthesis Plant Metabolic Network ISS
PWY-5910SoyCyc9 superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) Plant Metabolic Network ISS
GN7V-50523SoyCyc9-rxn geranylgeranyl diphosphate synthase Plant Metabolic Network ISS

Proteins Associated with Glyma.14g023000
LocusGene SymbolProtein Name
GPPS geranyl-diphosphate synthase

Expression Patterns of Glyma.14g023000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.14g023000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma14g02630 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.14g023000
>Glyma.14g023000.1 sequence-type=CDS polypeptide=Glyma.14g023000.1.p locus=Glyma.14g023000 ID=Glyma.14g023000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTTGGAGCCCTTCTCCTCAACGCCAACTTCAAGATTCATTTCTCACTCATATCATGCCAAGCCCGTGTCCCCTTACCCGTCAAGCCCGCACCGCTCAGAATGCCCTCTCCCCACTACCCCCACTGGGCCTCCTTGCAGGCCGACATTGAAGCCCACCTCAAACAAACCATTCCCCTCAAAGAACCCCTCGAGGTCTTCGAGCCCATGCTCCACCTCGCCTTCTCCGCCCCCCGGACCACCGTCCCGGCCCTATGCCTCGCCGCCTGCGAGCTTGTCGGCGGTCACCGCCAACAAGCCATGGCCGCGGCATCGGCCTTGTTACTCAACCTCGCCAATGCACACGCCCATGAACACCTAACCGACGGGCCCATGTACGGCCCCAACATAGAACTCCTCACCGGGGACGGGATTGTTCCGTTCGGGTTTGAGTTGCTGGCGAGGCCCGACGGGCCAGCAAGTGCGAGCCCGGAGCGAGTCCTACGTGTGATGATTGAGATATCACGTGCGGTGGGTTCGGTGGGGTTGCAAGACGCGCAGTACGTGAAGAAAACGTTGTGGGACGGTGGTGAGGAGGTGCAAAACGTGGAAAGCATGCAGCGCTTTGTATTGGAGAAAAGGGACGGTGGGTTGCATGCATGTGGGGCTGCGTCTGGTGCCATCTTGGGAGGTGGGAGTGAGGACCAAATTGAAAGGTTGAGAAATTTTGGATTTCATGTGGGGATGATGAGGGGAATGCTACAAATGGGGTTCATGGAAAAACATGTGCAAGAGGAGAGACATCTTGCACTCAAGGAACTGCAATTTTTCATGGACAGAGATGTTCATGTTATTTCTAGTTTTATTTATTAA
Predicted protein sequences of Glyma.14g023000
>Glyma.14g023000.1.p sequence-type=predicted peptide transcript=Glyma.14g023000.1 locus=Glyma.14g023000 ID=Glyma.14g023000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGALLLNANFKIHFSLISCQARVPLPVKPAPLRMPSPHYPHWASLQADIEAHLKQTIPLKEPLEVFEPMLHLAFSAPRTTVPALCLAACELVGGHRQQAMAAASALLLNLANAHAHEHLTDGPMYGPNIELLTGDGIVPFGFELLARPDGPASASPERVLRVMIEISRAVGSVGLQDAQYVKKTLWDGGEEVQNVESMQRFVLEKRDGGLHACGAASGAILGGGSEDQIERLRNFGFHVGMMRGMLQMGFMEKHVQEERHLALKELQFFMDRDVHVISSFIY*






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