Glyma.14g018600

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Report for Sequence Feature Glyma.14g018600

Feature Type:	gene_model
Chromosome:	Gm14
Start:	1340434
stop:	1345730
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.14g018600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26770.1	AT	Phosphatidate cytidylyltransferase family protein	JGI	N/A	IEA
GO:0006629	GO-bp	lipid metabolic process	EnsemblGenomes	N/A	IEA
GO:0008654	GO-bp	phospholipid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0016024	GO-bp	CDP-diacylglycerol biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	EnsemblGenomes	N/A	IEA
GO:0016020	GO-cc	membrane	JGI	N/A	IEA
GO:0016021	GO-cc	integral component of membrane	EnsemblGenomes	N/A	IEA
GO:0004605	GO-mf	phosphatidate cytidylyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
GO:0016772	GO-mf	transferase activity, transferring phosphorus-containing groups	EnsemblGenomes	N/A	IEA
GO:0016772	GO-mf	transferase activity, transferring phosphorus-containing groups	JGI	N/A	IEA
GO:0016779	GO-mf	nucleotidyltransferase activity	EnsemblGenomes	N/A	IEA
KOG1440	KOG	CDP-diacylglycerol synthase	JGI	N/A	IEA
PTHR13773	Panther	PHOSPHATIDATE CYTIDYLYLTRANSFERASE	JGI	N/A	IEA
PF01148	PFAM	Cytidylyltransferase family	JGI	N/A	IEA
PHOSLIPSYN2-PWY	SoyCyc9	superpathway of phospholipid biosynthesis II (plants)	Plant Metabolic Network		ISS
PWY-5667	SoyCyc9	CDP-diacylglycerol biosynthesis I	Plant Metabolic Network		ISS
PWY0-1319	SoyCyc9	CDP-diacylglycerol biosynthesis II	Plant Metabolic Network		ISS
PWY4FS-7	SoyCyc9	phosphatidylglycerol biosynthesis I (plastidic)	Plant Metabolic Network		ISS
PWY4FS-8	SoyCyc9	phosphatidylglycerol biosynthesis II (non-plastidic)	Plant Metabolic Network		ISS
GN7V-67351	SoyCyc9-rxn	CTP:phosphatidate cytidyltransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.14g018600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g018600 not represented in the dataset	Glyma.14g018600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.14g018600

Paralog	Evidence	Comments
Glyma.02g295000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.14g018600 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma14g02210	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.14g018600

Limit To All Plant Sequences

>Glyma.14g018600.2 sequence-type=transcript locus=Glyma.14g018600 ID=Glyma.14g018600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTCTCGTTTCCCTCAAACATAGCGAAGCCACATCTAACATCATAAAAAAAATTTCTCAATTCGTGTTGATCCTTTTGTCATTTTTTACCTCTTAAATCCAAGGGAGATCTCAGTTCGTGCATGTATATGACTCCAAAAATATTTGAACTATCACTTCAACAATGAGAGATATACATACGGATACTAACTGTAGTTCACCAAGAACGCCAAATGTTCGACTAAGAAGACGCTCAAATGAGATTCCTGCAGAGATAAGCAAATCAAATGGAAACAATTTACTTGTCGATGATAAATCCAAATACAAATCAATGTGGATCCGTGCATACTCATCTCTGTGGATGCTAGCGAGTGTCTCACTAATCATATACTTGGGTCATCTTTACATCTGGGCCATGGTTGTGGTTATCCAAATATTTATGGCCAGTGAGCTCTTCAATCTACTTAGAAGAGCATCTCAAGATAAACGTCTCCCTAAGTTTAAGCTCTTGAACTGGCATTATTTCTTCACAGCAATGCTATTCGTATATGGCCGTATTCTCAGTCAACAACTTGTGAATACTGTGACTTCAGATAAACTCTTGTATAGATTTGTGAGCAACCTGATCAAGTATCAGATGGTTATATGCTACTTTTTATATATTGCAGGTTTTGTATGGTTTATTCTTTCATTGAAGAAGAGATATTACAAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGTAGGGATATTCTGGTTTCTTTTCCCTGCAATCCTCATTGCTATGAATGATGTTGGTGCATATTTCTTCGGTTTCTATTTTGGGAGAACACCTCTGATCAAGCTTTCTCCAAAGAAAACATGGGAAGGTTTCATTGGAGCGTCTGTTGCCACTATGATTGCTGCATTTACGTTTGCAAACTTCTTGGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAGGATTTATCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTACATTCCATTGCCAGGATTGATTTCTCATTGGCTTCCTTGGAAAGAGATAGCAGTTTTGCCAGTACAGTGGCATGCCTTGTGGATGGGACTATTTGCGTCAATAATAGCACCATTTGGAGGTTTTTTTGCTAGTGGCTTCAAAAGAGCTTTTAAAATCAAAGACTTTGGTGATAGTATACCTGGACATGGTGGATTTACAGACAGAATGGACTGCCAGATGGTAATGGCTGTTTTCGTCTACATTTACCATCAATCATTTGTTGTAGGCCAAGACTATTCAGTTGAGATGCTATTGGACCAGGTGAGTCTCTAGTTTAAGCAATTTATTGGCTAACTTTCATTCATGTGAAAATTAGAGGATTCT

Coding sequences of Glyma.14g018600

Limit To All Plant Sequences

>Glyma.14g018600.1 sequence-type=CDS polypeptide=Glyma.14g018600.1.p locus=Glyma.14g018600 ID=Glyma.14g018600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGATATACATACGGATACTAACTGTAGTTCACCAAGAACGCCAAATGTTCGACTAAGAAGACGCTCAAATGAGATTCCTGCAGAGATAAGCAAATCAAATGGAAACAATTTACTTGTCGATGATAAATCCAAATACAAATCAATGTGGATCCGTGCATACTCATCTCTGTGGATGCTAGCGAGTGTCTCACTAATCATATACTTGGGTCATCTTTACATCTGGGCCATGGTTGTGGTTATCCAAATATTTATGGCCAGTGAGCTCTTCAATCTACTTAGAAGAGCATCTCAAGATAAACGTCTCCCTAAGTTTAAGCTCTTGAACTGGCATTATTTCTTCACAGCAATGCTATTCGTATATGGCCGTATTCTCAGTCAACAACTTGTGAATACTGTGACTTCAGATAAACTCTTGTATAGATTTGTGAGCAACCTGATCAAGTATCAGATGGTTATATGCTACTTTTTATATATTGCAGGTTTTGTATGGTTTATTCTTTCATTGAAGAAGAGATATTACAAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGTAGGGATATTCTGGTTTCTTTTCCCTGCAATCCTCATTGCTATGAATGATGTTGGTGCATATTTCTTCGGTTTCTATTTTGGGAGAACACCTCTGATCAAGCTTTCTCCAAAGAAAACATGGGAAGGTTTCATTGGAGCGTCTGTTGCCACTATGATTGCTGCATTTACGTTTGCAAACTTCTTGGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAGGATTTATCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTACATTCCATTGCCAGGATTGATTTCTCATTGGCTTCCTTGGAAAGAGATAGCAGTTTTGCCAGTACAGTGGCATGCCTTGTGGATGGGACTATTTGCGTCAATAATAGCACCATTTGGAGGTTTTTTTGCTAGTGGCTTCAAAAGAGCTTTTAAAATCAAAGACTTTGGTGATAGTATACCTGGACATGGTGGATTTACAGACAGAATGGACTGCCAGATGGTAATGGCTGTTTTCGTCTACATTTACCATCAATCATTTGTTGTAGGCCAAGACTATTCAGTTGAGATGCTATTGGACCAGGTGAGTCTCTAG

>Glyma.14g018600.2 sequence-type=CDS polypeptide=Glyma.14g018600.2.p locus=Glyma.14g018600 ID=Glyma.14g018600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAGATATACATACGGATACTAACTGTAGTTCACCAAGAACGCCAAATGTTCGACTAAGAAGACGCTCAAATGAGATTCCTGCAGAGATAAGCAAATCAAATGGAAACAATTTACTTGTCGATGATAAATCCAAATACAAATCAATGTGGATCCGTGCATACTCATCTCTGTGGATGCTAGCGAGTGTCTCACTAATCATATACTTGGGTCATCTTTACATCTGGGCCATGGTTGTGGTTATCCAAATATTTATGGCCAGTGAGCTCTTCAATCTACTTAGAAGAGCATCTCAAGATAAACGTCTCCCTAAGTTTAAGCTCTTGAACTGGCATTATTTCTTCACAGCAATGCTATTCGTATATGGCCGTATTCTCAGTCAACAACTTGTGAATACTGTGACTTCAGATAAACTCTTGTATAGATTTGTGAGCAACCTGATCAAGTATCAGATGGTTATATGCTACTTTTTATATATTGCAGGTTTTGTATGGTTTATTCTTTCATTGAAGAAGAGATATTACAAGTATCAGTTTGGCCAGTATGCATGGACACATATGATACTTATTGTTGTGTTTACCCAGTCTGCGTTCACTGTAGCCAACATATTTGTAGGGATATTCTGGTTTCTTTTCCCTGCAATCCTCATTGCTATGAATGATGTTGGTGCATATTTCTTCGGTTTCTATTTTGGGAGAACACCTCTGATCAAGCTTTCTCCAAAGAAAACATGGGAAGGTTTCATTGGAGCGTCTGTTGCCACTATGATTGCTGCATTTACGTTTGCAAACTTCTTGGGTCGCTTCCAGTGGCTAACATGTCCAAGGAAGGATTTATCAACTGGTTGGCTTCAGTGTGACCCTGACCCAATTTTTAAGCCAGATTACATTCCATTGCCAGGATTGATTTCTCATTGGCTTCCTTGGAAAGAGATAGCAGTTTTGCCAGTACAGTGGCATGCCTTGTGGATGGGACTATTTGCGTCAATAATAGCACCATTTGGAGGTTTTTTTGCTAGTGGCTTCAAAAGAGCTTTTAAAATCAAAGACTTTGGTGATAGTATACCTGGACATGGTGGATTTACAGACAGAATGGACTGCCAGATGGTAATGGCTGTTTTCGTCTACATTTACCATCAATCATTTGTTGTAGGCCAAGACTATTCAGTTGAGATGCTATTGGACCAGGTGAGTCTCTAG

Predicted protein sequences of Glyma.14g018600

Limit To All Plant Sequences

>Glyma.14g018600.1.p sequence-type=predicted peptide transcript=Glyma.14g018600.1 locus=Glyma.14g018600 ID=Glyma.14g018600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRDIHTDTNCSSPRTPNVRLRRRSNEIPAEISKSNGNNLLVDDKSKYKSMWIRAYSSLWMLASVSLIIYLGHLYIWAMVVVIQIFMASELFNLLRRASQDKRLPKFKLLNWHYFFTAMLFVYGRILSQQLVNTVTSDKLLYRFVSNLIKYQMVICYFLYIAGFVWFILSLKKRYYKYQFGQYAWTHMILIVVFTQSAFTVANIFVGIFWFLFPAILIAMNDVGAYFFGFYFGRTPLIKLSPKKTWEGFIGASVATMIAAFTFANFLGRFQWLTCPRKDLSTGWLQCDPDPIFKPDYIPLPGLISHWLPWKEIAVLPVQWHALWMGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMVMAVFVYIYHQSFVVGQDYSVEMLLDQVSL*

>Glyma.14g018600.2.p sequence-type=predicted peptide transcript=Glyma.14g018600.2 locus=Glyma.14g018600 ID=Glyma.14g018600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRDIHTDTNCSSPRTPNVRLRRRSNEIPAEISKSNGNNLLVDDKSKYKSMWIRAYSSLWMLASVSLIIYLGHLYIWAMVVVIQIFMASELFNLLRRASQDKRLPKFKLLNWHYFFTAMLFVYGRILSQQLVNTVTSDKLLYRFVSNLIKYQMVICYFLYIAGFVWFILSLKKRYYKYQFGQYAWTHMILIVVFTQSAFTVANIFVGIFWFLFPAILIAMNDVGAYFFGFYFGRTPLIKLSPKKTWEGFIGASVATMIAAFTFANFLGRFQWLTCPRKDLSTGWLQCDPDPIFKPDYIPLPGLISHWLPWKEIAVLPVQWHALWMGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGFTDRMDCQMVMAVFVYIYHQSFVVGQDYSVEMLLDQVSL*

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