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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G55900.1 | AT | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | JGI | N/A | IEA |
| GO:0006470 | GO-bp | protein dephosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0015031 | GO-bp | protein transport | EnsemblGenomes | N/A | IEA |
| GO:0030150 | GO-bp | protein import into mitochondrial matrix | EnsemblGenomes | N/A | IEA |
| GO:0005743 | GO-cc | mitochondrial inner membrane | EnsemblGenomes | N/A | IEA |
| GO:0005744 | GO-cc | mitochondrial inner membrane presequence translocase complex | EnsemblGenomes | N/A | IEA |
| GO:0004721 | GO-mf | phosphoprotein phosphatase activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| KOG2832 | KOG | TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) | JGI | N/A | IEA |
| PTHR12210 | Panther | NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED | JGI | N/A | IEA |
| PTHR12210:SF3 | Panther | MITOCHONDRIAL IMPORT INNER MEMBRANE TRANSLOCASE SUBUNIT TIM50 | JGI | N/A | IEA |
| PF03031 | PFAM | NLI interacting factor-like phosphatase | JGI | N/A | IEA |
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Glyma.14g014300 not represented in the dataset |
Glyma.14g014300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g299400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma14g01810 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.14g014300.2 sequence-type=transcript locus=Glyma.14g014300 ID=Glyma.14g014300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AAAGCACGGCTTAGCTTACGAAATAAGAAATGATGGAATAACTGGTAGCCAAACAGGGCATAACCGAAGTTGGTTCTGTTTCTGCAAAGCCCAAGACCAAAACCCTACTTGAACCCTTTCTCTCTTCGTCACCGCTCACAAACATCACAACTATGTCCTTGGGAATTCTTCGATCGCGAGCGATTTCATTGGCATCGAAGCGATTTCTCTGCACCAATGCCGCTTCGGCTCCTCTCCCCCCTCCTCCTTCCGCCGCTTCTCCCAGCCGCTGGAACTTCCTCAAATACGCCGTCGTCGGCGCTCTCACCGGAGGCACTGCCTTTGCCGGTTACGCCTCTTACGCTTACAGTTTGGAAGAAGTAGAAGAGAAAACGAGGTCGTTTCGTGAATCGGCCAAATACGCTGCTGGTGATGGAGCCACTGCTCTCGATAAATTTCAAGGTTTGCTATACTCAACTGCAATGACAGTGCCTGCTAAAGCAGTAGAGCTTTATTTGGATGCAAGAAGGCTAATTGAAGAACAAAGTTATACTGAACCATACACAGACAAGCTCCTTCCTGATCTGCTTCCTCAGGAGCAACATGTGTTTACACTTGTTCTTGATCTCAATGAGACATTGATTCACTATATTTGGACGCGAGATACAGGTTGGCAGACTTTTAAAAGACCTGGAGTTGATGCCTTCTTGGAACATTTAGCTCAGTTCTACGAAATAGTGGTGTACACAGATGAGCAAAATATGTTTGTAGACCCTGTTATAGAAAGGCTGGATACCAAGCATTGCATTAGATACAGGCTATCGAGGCCAGCTACTAAGTATCAGGATGGGAAACACTTCAGAGACCTCTCAAAACTAAACAGAAATCCAGGAAAAGTTCTTTATTTAAGTGGCCATGCTTTGGAAAGTTGCCTACAACCCGAGAACTGTCTCCCTATTAAGGCTTGGCAGCAGCAAGATATAGATGACACAGCTCTTTTGGATTTTATACCATTTCTTGAGTTTGTTGCCCGTAGTAGTCCACCTGATATAAGACCAGTGCTAGCCTCTTACCAAGGATGTGATATTCCAAGTGAGTTCATCAGGCGTTCCAAGGAGCATCAAAGGTAATATTTAATCTTTTAGAAACCTTGAAGATTATAATATTTTCAGTATTTCCTTAACAA
>Glyma.14g014300.1 sequence-type=CDS polypeptide=Glyma.14g014300.1.p locus=Glyma.14g014300 ID=Glyma.14g014300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCCTTGGGAATTCTTCGATCGCGAGCGATTTCATTGGCATCGAAGCGATTTCTCTGCACCAATGCCGCTTCGGCTCCTCTCCCCCCTCCTCCTTCCGCCGCTTCTCCCAGCCGCTGGAACTTCCTCAAATACGCCGTCGTCGGCGCTCTCACCGGAGGCACTGCCTTTGCCGGTTACGCCTCTTACGCTTACAGTTTGGAAGAAGTAGAAGAGAAAACGAGGTCGTTTCGTGAATCGGCCAAATACGCTGCTGGTGATGGAGCCACTGCTCTCGATAAATTTCAAGGTTTGCTATACTCAACTGCAATGACAGTGCCTGCTAAAGCAGTAGAGCTTTATTTGGATGCAAGAAGGCTAATTGAAGAACAAAGTTATACTGAACCATACACAGACAAGCTCCTTCCTGATCTGCTTCCTCAGGAGCAACATGTGTTTACACTTGTTCTTGATCTCAATGAGACATTGATTCACTATATTTGGACGCGAGATACAGGTTGGCAGACTTTTAAAAGACCTGGAGTTGATGCCTTCTTGGAACATTTAGCTCAGTTCTACGAAATAGTGGTGTACACAGATGAGCAAAATATGTTTGTAGACCCTGTTATAGAAAGGCTGGATACCAAGCATTGCATTAGATACAGGCTATCGAGGCCAGCTACTAAGTATCAGGATGGGAAACACTTCAGAGACCTCTCAAAACTAAACAGAAATCCAGGAAAAGTTCTTTATTTAAGTGGCCATGCTTTGGAAAGTTGCCTACAACCCGAGAACTGTCTCCCTATTAAGGCTTGGCAGCAGCAAGATATAGATGACACAGCTCTTTTGGATTTTATACCATTTCTTGAGTTTGTTGCCCGTAGTAGTCCACCTGATATAAGACCAGTGCTAGCCTCTTACCAAGGATGTGATATTCCAAGTGAGTTCATCAGGCGTTCCAAGGAGCATCAAAGGAGAATGCAAGAACAAAAAAATCGTGGTCGCTTCTGGAAATGA >Glyma.14g014300.2 sequence-type=CDS polypeptide=Glyma.14g014300.2.p locus=Glyma.14g014300 ID=Glyma.14g014300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCCTTGGGAATTCTTCGATCGCGAGCGATTTCATTGGCATCGAAGCGATTTCTCTGCACCAATGCCGCTTCGGCTCCTCTCCCCCCTCCTCCTTCCGCCGCTTCTCCCAGCCGCTGGAACTTCCTCAAATACGCCGTCGTCGGCGCTCTCACCGGAGGCACTGCCTTTGCCGGTTACGCCTCTTACGCTTACAGTTTGGAAGAAGTAGAAGAGAAAACGAGGTCGTTTCGTGAATCGGCCAAATACGCTGCTGGTGATGGAGCCACTGCTCTCGATAAATTTCAAGGTTTGCTATACTCAACTGCAATGACAGTGCCTGCTAAAGCAGTAGAGCTTTATTTGGATGCAAGAAGGCTAATTGAAGAACAAAGTTATACTGAACCATACACAGACAAGCTCCTTCCTGATCTGCTTCCTCAGGAGCAACATGTGTTTACACTTGTTCTTGATCTCAATGAGACATTGATTCACTATATTTGGACGCGAGATACAGGTTGGCAGACTTTTAAAAGACCTGGAGTTGATGCCTTCTTGGAACATTTAGCTCAGTTCTACGAAATAGTGGTGTACACAGATGAGCAAAATATGTTTGTAGACCCTGTTATAGAAAGGCTGGATACCAAGCATTGCATTAGATACAGGCTATCGAGGCCAGCTACTAAGTATCAGGATGGGAAACACTTCAGAGACCTCTCAAAACTAAACAGAAATCCAGGAAAAGTTCTTTATTTAAGTGGCCATGCTTTGGAAAGTTGCCTACAACCCGAGAACTGTCTCCCTATTAAGGCTTGGCAGCAGCAAGATATAGATGACACAGCTCTTTTGGATTTTATACCATTTCTTGAGTTTGTTGCCCGTAGTAGTCCACCTGATATAAGACCAGTGCTAGCCTCTTACCAAGGATGTGATATTCCAAGTGAGTTCATCAGGCGTTCCAAGGAGCATCAAAGGTAA
>Glyma.14g014300.1.p sequence-type=predicted peptide transcript=Glyma.14g014300.1 locus=Glyma.14g014300 ID=Glyma.14g014300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSLGILRSRAISLASKRFLCTNAASAPLPPPPSAASPSRWNFLKYAVVGALTGGTAFAGYASYAYSLEEVEEKTRSFRESAKYAAGDGATALDKFQGLLYSTAMTVPAKAVELYLDARRLIEEQSYTEPYTDKLLPDLLPQEQHVFTLVLDLNETLIHYIWTRDTGWQTFKRPGVDAFLEHLAQFYEIVVYTDEQNMFVDPVIERLDTKHCIRYRLSRPATKYQDGKHFRDLSKLNRNPGKVLYLSGHALESCLQPENCLPIKAWQQQDIDDTALLDFIPFLEFVARSSPPDIRPVLASYQGCDIPSEFIRRSKEHQRRMQEQKNRGRFWK* >Glyma.14g014300.2.p sequence-type=predicted peptide transcript=Glyma.14g014300.2 locus=Glyma.14g014300 ID=Glyma.14g014300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSLGILRSRAISLASKRFLCTNAASAPLPPPPSAASPSRWNFLKYAVVGALTGGTAFAGYASYAYSLEEVEEKTRSFRESAKYAAGDGATALDKFQGLLYSTAMTVPAKAVELYLDARRLIEEQSYTEPYTDKLLPDLLPQEQHVFTLVLDLNETLIHYIWTRDTGWQTFKRPGVDAFLEHLAQFYEIVVYTDEQNMFVDPVIERLDTKHCIRYRLSRPATKYQDGKHFRDLSKLNRNPGKVLYLSGHALESCLQPENCLPIKAWQQQDIDDTALLDFIPFLEFVARSSPPDIRPVLASYQGCDIPSEFIRRSKEHQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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