Glyma.14g003200

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.14g003200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.14g003200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.14g003200

Feature Type:	gene_model
Chromosome:	Gm14
Start:	306245
stop:	310111
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.14g003200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G03475.1	AT	Coproporphyrinogen III oxidase	JGI	N/A	IEA
GO:0006779	GO-bp	porphyrin-containing compound biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006779	GO-bp	porphyrin-containing compound biosynthetic process	JGI	N/A	IEA
GO:0006782	GO-bp	protoporphyrinogen IX biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0006783	GO-bp	heme biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0015995	GO-bp	chlorophyll biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	EnsemblGenomes	N/A	IEA
GO:0055114	GO-bp	oxidation-reduction process	JGI	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0009536	GO-cc	plastid	EnsemblGenomes	N/A	IEA
GO:0004109	GO-mf	coproporphyrinogen oxidase activity	EnsemblGenomes	N/A	IEA
GO:0004109	GO-mf	coproporphyrinogen oxidase activity	JGI	N/A	IEA
GO:0016491	GO-mf	oxidoreductase activity	EnsemblGenomes	N/A	IEA
GO:0042803	GO-mf	protein homodimerization activity	EnsemblGenomes	N/A	IEA
KOG1518	KOG	Coproporphyrinogen III oxidase CPO/HEM13	JGI	N/A	IEA
PTHR10755	Panther	COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL	JGI	N/A	IEA
PF01218	PFAM	Coproporphyrinogen III oxidase	JGI	N/A	IEA
CHLOROPHYLL-SYN	SoyCyc9	3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent)	Plant Metabolic Network		ISS
HEME-BIOSYNTHESIS-II	SoyCyc9	heme b biosynthesis I (aerobic)	Plant Metabolic Network		ISS
PWY-5918	SoyCyc9	superpathay of heme b biosynthesis from glutamate	Plant Metabolic Network		ISS
GN7V-53535	SoyCyc9-rxn	coproporphyrinogen oxidase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.14g003200

Locus	Gene Symbol	Protein Name
	CPX	coproporphyrinogen oxidase

Expression Patterns of Glyma.14g003200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.14g003200 not represented in the dataset	Glyma.14g003200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.14g003200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma14g00620	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.14g003200

Limit To All Plant Sequences

>Glyma.14g003200.2 sequence-type=transcript locus=Glyma.14g003200 ID=Glyma.14g003200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
attttaaACTGCAAGCGTTGGGAGAAAGGAAGGAAGACCTTATCATCTCCGAATTTCATTTTCAGAAGCCTCTTTGGGAATCAAATCCGAAGCATGATGCATTGTGCGAGCATTGTCTCGGCTCCGTCCTACGCGTTCCCTTTTCTCTCTGGCTCCGCTTCCACTACTCCAACTGCGATCTCGCTCACTAAGCGCAGTTGGAAGCCACCTCCGAGCATGGCAAAAGGCCCAGTCAGAGCCACCGTTTCTATAGAGAAAGAGACCCCGGAGGCCAATCGTCCCGAAACGTTTCTCAGAGGAGTGGACGAGGCCCAGTCTTCCACTTCGGTTCGGGCCCGCTTCGAGAAGATGATAAGGGAGGCCCAGGACACCGTGTGCAGTGCCCTCGAGGCCGCTGATGGTGGGGCCCAGTTCAAGGAGGACGTTTGGTCCAGGCCCGGTGGCGGCGGTGGCATTAGCAGGGTCCTTCAAGACGGTGCCGTTTGGGAGAAGGCTGGGGTTAATGTCTCTGTTGTTTACGGTGTCATGCCACCTGACGCATATCGTGCTGCCAAGGGTGTTCCTACCGATCAAAAACCTGGTCCTGTGCCTTTCTTCGCTGCTGGAATCAGCTCCGTTTTACACCCAAAGAACCCGTTTGCCCCTACCCTACATTTCAACTATCGCTATTTTGAAACCGATGCTCCTAAAGATGCTCCTGGAGCACCTAGACAATGGTGGTTTGGTGGGGGAACTGACTTGACACCAGCTTACATTTTTGAGGAGGATGTTAAGCACTTCCATTCAATTCAAAAACAAGCCTGTGACAAGTTTGAACCTACTTTTTACCCCCGATTCAAGAAATGGTGTGATGATTACTTTTATATCAAGCATCGAGGTGAAAGGAGAGGGCTTGGAGGAATATTTTTTGATGATCTTAATGACTATGATCAGGAGATGCTCCTTTCCTTTGCTACTGAATGTGCAAATTCTGTTATTCCTGCTTATTTACCTATCATAGAGAAAAGGAAGGATTTGCCCTTCAATGATCATCAGAAAGCATGGCAACAATTGCGAAGGGGACGATATGTTGAATTCAATTTGGTATATGATAGGGGTACAACATTTGGACTGAAAACTGGAGGGAGAATAGAGAGTATACTTGTTTCTCTCCCACTGACTGCTCGGTGGGAATACGATCATGTACGATTTTGGAATCTTCTTTATTTTAAACAAGTTAGATGTTAGATGACTTAAATTTTCCATTTATGAAATTGCTACTGAAACGGTGGTGACCTTTTGTATGCAGAAACCGGAAGAAGGAAGCGAAGAATGGAAACTCTTGGACGCATGCATCAACCCCAAGGAATGGATCTAATTCATCAGTTGACCCCCCAATTTGTCAGCTTTTTAATTTAATAATAAGGGAGCTTGTTTCTTTTTTCGGTGTATATCAAGTGCTTGTTATGATGAGTCAGAATGTTAGCTTGTTGTACTAGGTGGATTGTAAATCACGTATTTTGCTAGAGTCATCCGCGTAAAGCGTGAAAATGCAGAAAATTACAAATGTCTAGGCTGCGTCTGTAGTATACCTACTGCCAACCATTGTTCTTTCTACAAGTAACTCCTCAATCCCATGTAAGAAAACAAAAGGCAGCTTCTTTAATGCCAGTATTGCACAACACCTCAGACTAGTAAATTGGTAATTCTGTTGAAGGTGATATAATACTTTTGACTGAAAAATCTTTGAGCAATTGCTATATGTAAGATCCTATAATTTGCC

Coding sequences of Glyma.14g003200

Limit To All Plant Sequences

>Glyma.14g003200.1 sequence-type=CDS polypeptide=Glyma.14g003200.1.p locus=Glyma.14g003200 ID=Glyma.14g003200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGCATTGTGCGAGCATTGTCTCGGCTCCGTCCTACGCGTTCCCTTTTCTCTCTGGCTCCGCTTCCACTACTCCAACTGCGATCTCGCTCACTAAGCGCAGTTGGAAGCCACCTCCGAGCATGGCAAAAGGCCCAGTCAGAGCCACCGTTTCTATAGAGAAAGAGACCCCGGAGGCCAATCGTCCCGAAACGTTTCTCAGAGGAGTGGACGAGGCCCAGTCTTCCACTTCGGTTCGGGCCCGCTTCGAGAAGATGATAAGGGAGGCCCAGGACACCGTGTGCAGTGCCCTCGAGGCCGCTGATGGTGGGGCCCAGTTCAAGGAGGACGTTTGGTCCAGGCCCGGTGGCGGCGGTGGCATTAGCAGGGTCCTTCAAGACGGTGCCGTTTGGGAGAAGGCTGGGGTTAATGTCTCTGTTGTTTACGGTGTCATGCCACCTGACGCATATCGTGCTGCCAAGGGTGTTCCTACCGATCAAAAACCTGGTCCTGTGCCTTTCTTCGCTGCTGGAATCAGCTCCGTTTTACACCCAAAGAACCCGTTTGCCCCTACCCTACATTTCAACTATCGCTATTTTGAAACCGATGCTCCTAAAGATGCTCCTGGAGCACCTAGACAATGGTGGTTTGGTGGGGGAACTGACTTGACACCAGCTTACATTTTTGAGGAGGATGTTAAGCACTTCCATTCAATTCAAAAACAAGCCTGTGACAAGTTTGAACCTACTTTTTACCCCCGATTCAAGAAATGGTGTGATGATTACTTTTATATCAAGCATCGAGGTGAAAGGAGAGGGCTTGGAGGAATATTTTTTGATGATCTTAATGACTATGATCAGGAGATGCTCCTTTCCTTTGCTACTGAATGTGCAAATTCTGTTATTCCTGCTTATTTACCTATCATAGAGAAAAGGAAGGATTTGCCCTTCAATGATCATCAGAAAGCATGGCAACAATTGCGAAGGGGACGATATGTTGAATTCAATTTGGTATATGATAGGGGTACAACATTTGGACTGAAAACTGGAGGGAGAATAGAGAGTATACTTGTTTCTCTCCCACTGACTGCTCGGTGGGAATACGATCATAAACCGGAAGAAGGAAGCGAAGAATGGAAACTCTTGGACGCATGCATCAACCCCAAGGAATGGATCTAA

>Glyma.14g003200.2 sequence-type=CDS polypeptide=Glyma.14g003200.2.p locus=Glyma.14g003200 ID=Glyma.14g003200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGCATTGTGCGAGCATTGTCTCGGCTCCGTCCTACGCGTTCCCTTTTCTCTCTGGCTCCGCTTCCACTACTCCAACTGCGATCTCGCTCACTAAGCGCAGTTGGAAGCCACCTCCGAGCATGGCAAAAGGCCCAGTCAGAGCCACCGTTTCTATAGAGAAAGAGACCCCGGAGGCCAATCGTCCCGAAACGTTTCTCAGAGGAGTGGACGAGGCCCAGTCTTCCACTTCGGTTCGGGCCCGCTTCGAGAAGATGATAAGGGAGGCCCAGGACACCGTGTGCAGTGCCCTCGAGGCCGCTGATGGTGGGGCCCAGTTCAAGGAGGACGTTTGGTCCAGGCCCGGTGGCGGCGGTGGCATTAGCAGGGTCCTTCAAGACGGTGCCGTTTGGGAGAAGGCTGGGGTTAATGTCTCTGTTGTTTACGGTGTCATGCCACCTGACGCATATCGTGCTGCCAAGGGTGTTCCTACCGATCAAAAACCTGGTCCTGTGCCTTTCTTCGCTGCTGGAATCAGCTCCGTTTTACACCCAAAGAACCCGTTTGCCCCTACCCTACATTTCAACTATCGCTATTTTGAAACCGATGCTCCTAAAGATGCTCCTGGAGCACCTAGACAATGGTGGTTTGGTGGGGGAACTGACTTGACACCAGCTTACATTTTTGAGGAGGATGTTAAGCACTTCCATTCAATTCAAAAACAAGCCTGTGACAAGTTTGAACCTACTTTTTACCCCCGATTCAAGAAATGGTGTGATGATTACTTTTATATCAAGCATCGAGGTGAAAGGAGAGGGCTTGGAGGAATATTTTTTGATGATCTTAATGACTATGATCAGGAGATGCTCCTTTCCTTTGCTACTGAATGTGCAAATTCTGTTATTCCTGCTTATTTACCTATCATAGAGAAAAGGAAGGATTTGCCCTTCAATGATCATCAGAAAGCATGGCAACAATTGCGAAGGGGACGATATGTTGAATTCAATTTGGTATATGATAGGGGTACAACATTTGGACTGAAAACTGGAGGGAGAATAGAGAGTATACTTGTTTCTCTCCCACTGACTGCTCGGTGGGAATACGATCATGTACGATTTTGGAATCTTCTTTATTTTAAACAAGTTAGATGTTAG

Predicted protein sequences of Glyma.14g003200

Limit To All Plant Sequences

>Glyma.14g003200.1.p sequence-type=predicted peptide transcript=Glyma.14g003200.1 locus=Glyma.14g003200 ID=Glyma.14g003200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMHCASIVSAPSYAFPFLSGSASTTPTAISLTKRSWKPPPSMAKGPVRATVSIEKETPEANRPETFLRGVDEAQSSTSVRARFEKMIREAQDTVCSALEAADGGAQFKEDVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGVPTDQKPGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSIQKQACDKFEPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWI*

>Glyma.14g003200.2.p sequence-type=predicted peptide transcript=Glyma.14g003200.2 locus=Glyma.14g003200 ID=Glyma.14g003200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMHCASIVSAPSYAFPFLSGSASTTPTAISLTKRSWKPPPSMAKGPVRATVSIEKETPEANRPETFLRGVDEAQSSTSVRARFEKMIREAQDTVCSALEAADGGAQFKEDVWSRPGGGGGISRVLQDGAVWEKAGVNVSVVYGVMPPDAYRAAKGVPTDQKPGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSIQKQACDKFEPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHVRFWNLLYFKQVRC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain