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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G17380.1 | AT | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein | JGI | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | EnsemblGenomes | N/A | IEA |
| GO:0000287 | GO-mf | magnesium ion binding | JGI | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0030976 | GO-mf | thiamine pyrophosphate binding | EnsemblGenomes | N/A | IEA |
| GO:0030976 | GO-mf | thiamine pyrophosphate binding | JGI | N/A | IEA |
| KOG1185 | KOG | Thiamine pyrophosphate-requiring enzyme | JGI | N/A | IEA |
| PTHR18968 | Panther | THIAMINE PYROPHOSPHATE ENZYMES | JGI | N/A | IEA |
| PTHR18968:SF6 | Panther | 2-HYDROXYACYL-COA LYASE 1 | JGI | N/A | IEA |
| PF00205 | PFAM | Thiamine pyrophosphate enzyme, central domain | JGI | N/A | IEA |
| PF02775 | PFAM | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | JGI | N/A | IEA |
| PF02776 | PFAM | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | JGI | N/A | IEA |
| GN7V-54019 | SoyCyc9-rxn | oxalyl-CoA decarboxylase | Plant Metabolic Network | ISS |
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Glyma.14G207700 not represented in the dataset |
Glyma.14G207700 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.02g238800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.14g207700 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma14g38860 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.14g207700.1 sequence-type=CDS polypeptide=Glyma.14g207700.1.p locus=Glyma.14g207700 ID=Glyma.14g207700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGAAATTGACGGCAACGTTCTCGCGGCGAAGTCGCTGGTTCACTTCGGCGTGCAGCACATGTTCGGCGTCGTGGGGATTCCGGTGACCTCGCTGGCCAACCGCGCCGTCTCGCTCGGCGTGAGATTCATCGCCTTCCACAACGAGCAGTCCGCCGGCTATGCCGCCTCCGCCTACGGCTACCTCACGGGGCGCCCCGGCGTCTTCCTCACCGTCTCCGGCCCTGGCTGCGTCCACGGCCTCGCCGGCCTCTCCAACGCCTCCGTCAACACCTGGCCCACCGTCATGATCTCCGGCTCCTGCGACCAAAACGACGTCGGCCGCGGCGATTTTCAAGAACTCAACCAGATCGAAGCCACCAAACCTTTCACCAAACTCTCCGTCAAAGCGTCTCACATAACTGAAATCCCGGCCCGCGTGGCCCAGGTTCTCGATTGGGCCCAATCGGCCCGGCCCGGCGGCTGCTACTTAGATCTCCCCACCGACGTCTTACATCAAAAAATCTCCGAGTCCGAAGCAGAGAAACTCTTAACTGAAGCAGATAAAAACCGTTCCATATCCGAACCTAAAATCGAACGTCCTCTTTCCAATTCAAAGATTGAGGAAGCGGTTTCGCTTCTCAGACACGCGGAGAGGCCGTTGATCGTGTTCGGAAAAGGAGCTGCGTATGCACGTGCAGAGCACGTGCTCACAAAGCTGGTGAATTCCACTGGGATTCCTTTTCTCCCAACTCCGATGGGGAAAGGAATTTTACCTGACACCCACGCACTTGCGGCTACTGCAGCAAGGTCACTAGCGATTGGGAAGTGTGATGTGGCGCTTGTGGTGGGAGCGAGACTCAACTGGCTTCTACACTTCGGTGAACCACCGAAATGGTCTAAGGACGTGAAATTCATCTTGGTGGATGTGAGCGAAGAGGAGATTGAGCTGAGGAAGCCTCACTTAGGGTTAATTGGTGATGCCAAACACGTGATTGAGGTTTTGAACAAGGAGATTAAGGACGATCCGTTTTGCTTGGGGAGCACGCATCCTTGGGTGGAGGCGATTTCGAACAAGGCAAAGGAGAATGTGGCGAGGATGGAGGTTCAGCTGAAGAAGGACGTTGTGCCGTTTAATTTCTTGACGCCTATGAGGATTATAAGGGATGCCATTGCGGGTTTGGGGAGCCCTGCTCCTGTTGTGGTTTCGGAAGGGGCGAACACCATGGATGTGGGGAGGTCTGTGTTGGTTCAGACCGAGCCCCGAACGAGGTTGGATGCCGGCACCTGGGGGACCATGGGGGTTGGTCTTGGTTATTGTATTGCTGCCGCGGTTGCTTCGCCCGAGCGGCTTGTGGTTGCGGTTGAAGGGGATTCTGGATTTGGGTTTAGTGCTATGGAAGTTGAGACGTTGGTTCGGTACCAGCTGCCTGTGGTCGTGATTGTTTTCAACAATGGTGGTGTATATGGTGGTGACCGTAGACGCCCAGAGGAGATAGATGGACCTCACAAAGATGATCCTGCCCCCACAGATTTTGTCCCAAATGCAGGGTACCATGCTTTGATAGAAGCTTTTGGTGGAAAGGGCTATCTTGTTGGGACGCCTGATGAACTCAAGTCTGCCCTTTCAGAATCCTTCTCTGCTAGGAAACCAGCTGTAGTAAATGTTGTGATCGATCCCTATGCTGGTTCAGAGAGTGGGAGGATGCAACATAAGAATTGA
>Glyma.14g207700.1.p sequence-type=predicted peptide transcript=Glyma.14g207700.1 locus=Glyma.14g207700 ID=Glyma.14g207700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MEIDGNVLAAKSLVHFGVQHMFGVVGIPVTSLANRAVSLGVRFIAFHNEQSAGYAASAYGYLTGRPGVFLTVSGPGCVHGLAGLSNASVNTWPTVMISGSCDQNDVGRGDFQELNQIEATKPFTKLSVKASHITEIPARVAQVLDWAQSARPGGCYLDLPTDVLHQKISESEAEKLLTEADKNRSISEPKIERPLSNSKIEEAVSLLRHAERPLIVFGKGAAYARAEHVLTKLVNSTGIPFLPTPMGKGILPDTHALAATAARSLAIGKCDVALVVGARLNWLLHFGEPPKWSKDVKFILVDVSEEEIELRKPHLGLIGDAKHVIEVLNKEIKDDPFCLGSTHPWVEAISNKAKENVARMEVQLKKDVVPFNFLTPMRIIRDAIAGLGSPAPVVVSEGANTMDVGRSVLVQTEPRTRLDAGTWGTMGVGLGYCIAAAVASPERLVVAVEGDSGFGFSAMEVETLVRYQLPVVVIVFNNGGVYGGDRRRPEEIDGPHKDDPAPTDFVPNAGYHALIEAFGGKGYLVGTPDELKSALSESFSARKPAVVNVVIDPYAGSESGRMQHKN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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