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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G73110.1 | AT | P-loop containing nucleoside triphosphate hydrolases superfamily protein | JGI | N/A | IEA |
| GO:0009507 | GO-cc | chloroplast | EnsemblGenomes | N/A | IEA |
| GO:0009535 | GO-cc | chloroplast thylakoid membrane | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| KOG0651 | KOG | 26S proteasome regulatory complex, ATPase RPT4 | JGI | N/A | IEA |
| PTHR11603 | Panther | AAA FAMILY ATPASE | JGI | N/A | IEA |
| PTHR11603:SF153 | Panther | JGI | N/A | IEA | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | N/A | IEA |
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Glyma.13g371900 not represented in the dataset |
Glyma.13g371900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g44940 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g371900.1 sequence-type=CDS polypeptide=Glyma.13g371900.1.p locus=Glyma.13g371900 ID=Glyma.13g371900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGACGAAGTTGTTATCACCTTCAGCACCACCATGTCCATGTCTAAGGGTTCCAATTCCAAATCCAACCGTAAAATATCGATATGCATACAGTCACAGAGGGCAATTGCGTGTTCGATGCAGTGATAATAGTGATGAAGAGAAGGAGAAGGAGAAGAAGAAGAAGAAGGAAAAGCGGTTGTCTCAGCAGTCGTCGTGGGAAGCCCAAGACGCTGAGGGAAGAGACTATCTCTACCGACTTGGGAAAGAGGCTGATAACATGAACATCGCCGTCGGCCAGCGTGCTGGCGTCATCGATTCTCTTTTCGCCGGCAATTTTCTCGGCAAAGATTCGGACATTGTCTTTGATTATCGTCAAAAAGTGACGAGGTCCTTTCAATACCTTCAGGGCGATTATTACATCGCTCCTCTCTTCATGGACAAAGTTGTATGTCACATTGTGAAGAACTACCTAGCTCGTGTCCTCAACACTAAAGTTCCTTTAATTCTAGGTATTTGGGGAGGAAAAGGGCAAGGGAAATCATTTCAAACAGAACTTATATTTCAGGCTATGGGAATTGAACCTGTAATTATGTCTGCTGGGGAACTAGAATCAGAGAGAGCTGGAGAGCCAGGAAAATTGATTCGTGAACGCTATAGAACAGCATCTCAAGTGGTCCAGAATCAAGGAAAAATGAGCTGTTTGATGATCAATGATATTGATGCTGGCCTTGGTAGATTTGGGAATACTCAAATGACAGTCAACAATCAAATTGTTGTTGGGACTCTTATGAATCTGTCAGACAATCCTACAAGAGTAAGTGTTGGTCAAGATTGGCGAGAATCAGATGTCACAAACAGAATTCCAATCATTGTAACAGGGAACGATTTTTCAACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTGGCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAAGACAGTATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCTAATCAAGCTTTGGACTTTTATGGAGCTCTAAGATCACGTACATATGACAGATCTATTTTAAAGTGGATTGATGATATTGGAGGTGTTGAAAATTTTGGAAACAAACTTCTCAAGAGAAGAAAGGACCAAAGCCTTCCTGTATTTATTCCTCCAGAGCAAACGGTGGATGCTTTACTTGAATCGGGTTATTCTCTAATCAAAGAACAACGGTTGATAATGGAAACTAAACTTTCAAAGGAATACATGAAGAACATAGATGACTAA
>Glyma.13g371900.1.p sequence-type=predicted peptide transcript=Glyma.13g371900.1 locus=Glyma.13g371900 ID=Glyma.13g371900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MTKLLSPSAPPCPCLRVPIPNPTVKYRYAYSHRGQLRVRCSDNSDEEKEKEKKKKKEKRLSQQSSWEAQDAEGRDYLYRLGKEADNMNIAVGQRAGVIDSLFAGNFLGKDSDIVFDYRQKVTRSFQYLQGDYYIAPLFMDKVVCHIVKNYLARVLNTKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFGNTQMTVNNQIVVGTLMNLSDNPTRVSVGQDWRESDVTNRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILNIVHRMYEKDSISRDEVERVVNTFPNQALDFYGALRSRTYDRSILKWIDDIGGVENFGNKLLKRRKDQSLPVFIPPEQTVDALLESGYSLIKEQRLIMETKLSKEYMKNIDD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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