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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G52500.2 | AT | MUTM homolog-1 | JGI | N/A | IEA |
| GO:0006281 | GO-bp | DNA repair | EnsemblGenomes | N/A | IEA |
| GO:0006284 | GO-bp | base-excision repair | EnsemblGenomes | N/A | IEA |
| GO:0006284 | GO-bp | base-excision repair | JGI | N/A | IEA |
| GO:0006289 | GO-bp | nucleotide-excision repair | EnsemblGenomes | N/A | IEA |
| GO:0006289 | GO-bp | nucleotide-excision repair | JGI | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003684 | GO-mf | damaged DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003684 | GO-mf | damaged DNA binding | JGI | N/A | IEA |
| GO:0003906 | GO-mf | DNA-(apurinic or apyrimidinic site) endonuclease activity | EnsemblGenomes | N/A | IEA |
| GO:0003906 | GO-mf | DNA-(apurinic or apyrimidinic site) lyase activity | JGI | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | EnsemblGenomes | N/A | IEA |
| GO:0008270 | GO-mf | zinc ion binding | JGI | N/A | IEA |
| GO:0008534 | GO-mf | oxidized purine nucleobase lesion DNA N-glycosylase activity | EnsemblGenomes | N/A | IEA |
| GO:0016799 | GO-mf | hydrolase activity, hydrolyzing N-glycosyl compounds | EnsemblGenomes | N/A | IEA |
| GO:0016799 | GO-mf | hydrolase activity, hydrolyzing N-glycosyl compounds | JGI | N/A | IEA |
| GO:0019104 | GO-mf | DNA N-glycosylase activity | EnsemblGenomes | N/A | IEA |
| PTHR22993 | Panther | FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE | JGI | N/A | IEA |
| PTHR22993:SF4 | Panther | JGI | N/A | IEA | |
| PF01149 | PFAM | Formamidopyrimidine-DNA glycosylase N-terminal domain | JGI | N/A | IEA |
| PF06831 | PFAM | Formamidopyrimidine-DNA glycosylase H2TH domain | JGI | N/A | IEA |
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Glyma.13g366800 not represented in the dataset |
Glyma.13g366800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g44360 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g366800.1 sequence-type=CDS polypeptide=Glyma.13g366800.1.p locus=Glyma.13g366800 ID=Glyma.13g366800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCGGAGCTTCCAGAGGTAGAGGCGGCGAGGAGGGCCGTTGAGTATAACTGCGTCGGAAAGAGGATAACAAAGTGCGTTGTCGCCGATGATTCTAAGGTGATCCATGGTGTCTCTCCCTCCGACTTCCAAGCTTCCGTCCTCGGCAAGCTCATCGTCGCTGCTCACCGTAAGGGAAAGAACATGTGGCTTCAACTTGATTCTCCTCCTTTTCCTTCCTTCCAATTCGGTATGGCTGGTGCTATATACATTAAAGGAGCTGCAGTAACAAACTATAAAAGGTCTGCTGTAAAAGACGAGGATGAGTGGCCCTCAAAATATTCAAAAATTTTCATTGAGTTAGATGATGGTTTGGAGTTGTCTTTCACTGACAAAAGGCGATTTGCTAAAGTTCGTCTGCTCAAAGATCCGACATCAGTGCCTCCCATATCCGAGCTTGGTCCTGATGCACTTTTCGAACCTATGACACTTGAGAAGTTTACGGAGTCTTTGCACAAGAAGAAAACTGAAATCAAGGCTTTATTACTTGATCAAAGCTTTATTTCAGGTATTGGAAATTGGGTGGCAGATGAAGTGTTATACCAAGCAAGAATTCATCCGCGGCAGGTGGCTTCTAGCCTGTCTAATGAAAGCTGCTCAAATTTGAGCAAGTGCATTAAAGAGGTCATTGAAAAAGCAATTGAAGTTGGAGCAGAAAGTAGTCAGTATCCCACCAATTGGATATTTCATTCACGTGAAAAGAAGCCCGGCAAGGCTTTTGTTGATGGGAAAAAAATTGACTTCATCACAGCTGGTGGCAGGACAACTGCTTACGTGCCAGAGTTGCAAAAGCTAAGTGGATCTCTAGATGTAAAAGAAACTGGTAAGCCTAATAAAAGGCAAGCCTCAAAGAAAGTAAGGGTAGATGATGACACTGAAAAACCAACAAATGGGGAAGTGGACGATTTGGGAAGTGTCAAATCAAAGAAGGGGACAAAGGCTGGAGCTAAAGGTAGGAAGCCTTCAAAAAAGAAAAAGTCAGGGGGAAGTGATGAAGACAAAGATAGTAGTGATGTTGGTACTGATTATGATAGTGATCAAGTTGAAAAGAAGAATCCAGGCAACGTGGCTAGTAGGAAACAAGCTGGGGGAGAGAAGCAATCAAACAGGAGAGTTCAAAGCAATCAAACTAGTTGGAGTGCTAAAAGGAAAGCTAAGTAA
>Glyma.13g366800.1.p sequence-type=predicted peptide transcript=Glyma.13g366800.1 locus=Glyma.13g366800 ID=Glyma.13g366800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPELPEVEAARRAVEYNCVGKRITKCVVADDSKVIHGVSPSDFQASVLGKLIVAAHRKGKNMWLQLDSPPFPSFQFGMAGAIYIKGAAVTNYKRSAVKDEDEWPSKYSKIFIELDDGLELSFTDKRRFAKVRLLKDPTSVPPISELGPDALFEPMTLEKFTESLHKKKTEIKALLLDQSFISGIGNWVADEVLYQARIHPRQVASSLSNESCSNLSKCIKEVIEKAIEVGAESSQYPTNWIFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLSGSLDVKETGKPNKRQASKKVRVDDDTEKPTNGEVDDLGSVKSKKGTKAGAKGRKPSKKKKSGGSDEDKDSSDVGTDYDSDQVEKKNPGNVASRKQAGGEKQSNRRVQSNQTSWSAKRKAK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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