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Report for Sequence Feature Glyma.13g366500

Feature Type:gene_model
Chromosome:Gm13
Start:45224919
stop:45229494
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g366500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G48900.1AT Signal recognition particle, SRP54 subunit protein JGI N/AIEA
GO:0006614GO-bp SRP-dependent cotranslational protein targeting to membrane EnsemblGenomesN/AIEA
GO:0006614GO-bp SRP-dependent cotranslational protein targeting to membrane JGI N/AIEA
GO:0045047GO-bp protein targeting to ER EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005786GO-cc signal recognition particle, endoplasmic reticulum targeting EnsemblGenomesN/AIEA
GO:0048500GO-cc signal recognition particle EnsemblGenomesN/AIEA
GO:0048500GO-cc signal recognition particle JGI N/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
GO:0008312GO-mf 7S RNA binding EnsemblGenomesN/AIEA
GO:0008312GO-mf 7S RNA binding JGI N/AIEA
KOG0780 KOG Signal recognition particle, subunit Srp54 JGI N/AIEA
PTHR11564Panther GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS JGI N/AIEA
PTHR11564:SF5Panther SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN JGI N/AIEA
PF00448PFAM SRP54-type protein, GTPase domain JGI N/AIEA
PF02881PFAM SRP54-type protein, helical bundle domain JGI N/AIEA
PF02978PFAM Signal peptide binding domain JGI N/AIEA

Expression Patterns of Glyma.13g366500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g366500
ParalogEvidenceComments
Glyma.15g006700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g366500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g44330 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g366500
>Glyma.13g366500.1 sequence-type=CDS polypeptide=Glyma.13g366500.1.p locus=Glyma.13g366500 ID=Glyma.13g366500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCTGGCGGAGTTAGGTGGGAGCATTTCGCGTGCTCTCCAGCTGATGAGCAATGCGACAGTAATCGACGAGAAGGTGCTCAACGATTGCCTCAACGACATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTTGTCCGCGACATGCAGACCAACATCAAGAACATTGTCAACCTCGACGATCTCGCTGCCGGTCACAACAAACGCAGGATCATCCAACAAGCTGTGTTTAACGAACTCTGCAAAATTCTGGACCCTGGGAAGCCCTCTTTCACTCCCAAAAAGGGCAAAACAAGTGTTGTCATGTTTGTTGGTTTGCAAGGTTCTGGAAAAACCACAACGTGTACAAAGTATGCATATTATCATCAGAAGAAAGGCTGGAAGCCGGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCAACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAATCCGATCCGGTAAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGAGGCACAAACAAGAAGCTTCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAAGCCCAAGCATTTAAGCAGAGTGTTGCAGTTGGAGCTGTAATTGTTACCAAAATGGATGGCCATGCAAAAGGTGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGACGAGTTTGAAGTTTTTGATGTTAAGCCATTTGTCAGTCGTCTATTAGGAATGGGCGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTCGTTCCTATGGATCAACAACCTGAACTGCTTCAGAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTTTTTTCTATGCTTCCCGGATTTAGTGCTGAATTAATGCCAAAAGGCCGTGAGAAAGAAAGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGATTCAATGACAAACGAAGAGTTGGATAGTTCAAACCCCAAGCTCATGAATGAGTCACGCATGATGCGGATAGCTCGAGGTGCAGGTCGTCAGATTAGGGAAGTGATGGAGATGTTGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAAGGTGATATGAGTGCCCTATCCCGAAATATGAATGCCCAACACATGAGCAAAGTCCTTCCTCCTCAGATGCTGAAGCAAATTGGTGGCATGGGTGGGTTACAAAACTTGATGAAGCAGATGGGATCCGCCAAAGACATGATGGGAATGGGAGGAATGTTTGGTGGTGGTGGTGGTGGTGATTAG
Predicted protein sequences of Glyma.13g366500
>Glyma.13g366500.1.p sequence-type=predicted peptide transcript=Glyma.13g366500.1 locus=Glyma.13g366500 ID=Glyma.13g366500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVLAELGGSISRALQLMSNATVIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKNIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEASLFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGAGRQIREVMEMLEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMGGMFGGGGGGD*






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