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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G48900.1 | AT | Signal recognition particle, SRP54 subunit protein | JGI | N/A | IEA |
| GO:0006614 | GO-bp | SRP-dependent cotranslational protein targeting to membrane | EnsemblGenomes | N/A | IEA |
| GO:0006614 | GO-bp | SRP-dependent cotranslational protein targeting to membrane | JGI | N/A | IEA |
| GO:0045047 | GO-bp | protein targeting to ER | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005786 | GO-cc | signal recognition particle, endoplasmic reticulum targeting | EnsemblGenomes | N/A | IEA |
| GO:0048500 | GO-cc | signal recognition particle | EnsemblGenomes | N/A | IEA |
| GO:0048500 | GO-cc | signal recognition particle | JGI | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003723 | GO-mf | RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003924 | GO-mf | GTPase activity | EnsemblGenomes | N/A | IEA |
| GO:0005525 | GO-mf | GTP binding | EnsemblGenomes | N/A | IEA |
| GO:0005525 | GO-mf | GTP binding | JGI | N/A | IEA |
| GO:0008312 | GO-mf | 7S RNA binding | EnsemblGenomes | N/A | IEA |
| GO:0008312 | GO-mf | 7S RNA binding | JGI | N/A | IEA |
| KOG0780 | KOG | Signal recognition particle, subunit Srp54 | JGI | N/A | IEA |
| PTHR11564 | Panther | GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS | JGI | N/A | IEA |
| PTHR11564:SF5 | Panther | SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN | JGI | N/A | IEA |
| PF00448 | PFAM | SRP54-type protein, GTPase domain | JGI | N/A | IEA |
| PF02881 | PFAM | SRP54-type protein, helical bundle domain | JGI | N/A | IEA |
| PF02978 | PFAM | Signal peptide binding domain | JGI | N/A | IEA |
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Glyma.13g366500 not represented in the dataset |
Glyma.13g366500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g006700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g44330 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g366500.1 sequence-type=CDS polypeptide=Glyma.13g366500.1.p locus=Glyma.13g366500 ID=Glyma.13g366500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTTCTGGCGGAGTTAGGTGGGAGCATTTCGCGTGCTCTCCAGCTGATGAGCAATGCGACAGTAATCGACGAGAAGGTGCTCAACGATTGCCTCAACGACATCACTCGCGCTCTTCTTCAATCCGATGTTCAATTCAAGCTTGTCCGCGACATGCAGACCAACATCAAGAACATTGTCAACCTCGACGATCTCGCTGCCGGTCACAACAAACGCAGGATCATCCAACAAGCTGTGTTTAACGAACTCTGCAAAATTCTGGACCCTGGGAAGCCCTCTTTCACTCCCAAAAAGGGCAAAACAAGTGTTGTCATGTTTGTTGGTTTGCAAGGTTCTGGAAAAACCACAACGTGTACAAAGTATGCATATTATCATCAGAAGAAAGGCTGGAAGCCGGCTCTAGTATGTGCAGATACATTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCAACTAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAATCCGATCCGGTAAAAATTGCTGTGGAAGGTGTGGAGAGATTCAAGAAAGAAAACTGTGATCTTATAATTGTTGATACTAGTGGGAGGCACAAACAAGAAGCTTCTCTTTTTGAAGAAATGCGCCAAGTTTCGGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAAGCCCAAGCATTTAAGCAGAGTGTTGCAGTTGGAGCTGTAATTGTTACCAAAATGGATGGCCATGCAAAAGGTGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGACGAGTTTGAAGTTTTTGATGTTAAGCCATTTGTCAGTCGTCTATTAGGAATGGGCGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTCGTTCCTATGGATCAACAACCTGAACTGCTTCAGAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTTTTTTCTATGCTTCCCGGATTTAGTGCTGAATTAATGCCAAAAGGCCGTGAGAAAGAAAGCCAGGCAAAAATTAAGCGTTACATGACAATGATGGATTCAATGACAAACGAAGAGTTGGATAGTTCAAACCCCAAGCTCATGAATGAGTCACGCATGATGCGGATAGCTCGAGGTGCAGGTCGTCAGATTAGGGAAGTGATGGAGATGTTGGAAGAGTACAAACGTCTTGCAAAGATATGGAGCAAAATGAAAGGGCTTAAAATACCAAAGAAAGGTGATATGAGTGCCCTATCCCGAAATATGAATGCCCAACACATGAGCAAAGTCCTTCCTCCTCAGATGCTGAAGCAAATTGGTGGCATGGGTGGGTTACAAAACTTGATGAAGCAGATGGGATCCGCCAAAGACATGATGGGAATGGGAGGAATGTTTGGTGGTGGTGGTGGTGGTGATTAG
>Glyma.13g366500.1.p sequence-type=predicted peptide transcript=Glyma.13g366500.1 locus=Glyma.13g366500 ID=Glyma.13g366500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVLAELGGSISRALQLMSNATVIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKNIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKKENCDLIIVDTSGRHKQEASLFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESRMMRIARGAGRQIREVMEMLEEYKRLAKIWSKMKGLKIPKKGDMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMGGMFGGGGGGD*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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