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Report for Sequence Feature Glyma.13g362900

Feature Type:gene_model
Chromosome:Gm13
Start:44990134
stop:44992899
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g362900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80230.1AT Rubredoxin-like superfamily protein JGI N/AIEA
GO:0006123GO-bp mitochondrial electron transport, cytochrome c to oxygen EnsemblGenomesN/AIEA
GO:0022900GO-bp electron transport chain EnsemblGenomesN/AIEA
GO:0042776GO-bp mitochondrial ATP synthesis coupled proton transport EnsemblGenomesN/AIEA
GO:1902600GO-bp proton transmembrane transport EnsemblGenomesN/AIEA
GO:0005740GO-cc mitochondrial envelope EnsemblGenomesN/AIEA
GO:0005740GO-cc mitochondrial envelope JGI N/AIEA
GO:0005751GO-cc mitochondrial respiratory chain complex IV EnsemblGenomesN/AIEA
GO:0004129GO-mf cytochrome-c oxidase activity EnsemblGenomesN/AIEA
GO:0004129GO-mf cytochrome-c oxidase activity JGI N/AIEA
KOG3352 KOG Cytochrome c oxidase, subunit Vb/COX4 JGI N/AIEA
PTHR10122Panther CYTOCHROME C OXIDASE SUBUNIT 5B, MITOCHONDRIAL JGI N/AIEA
PF01215PFAM Cytochrome c oxidase subunit Vb JGI N/AIEA
PWY-3781SoyCyc9 aerobic respiration I (cytochrome c) Plant Metabolic Network ISS
GN7V-61741SoyCyc9-rxn cytochrome-c oxidase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g362900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g362900 not represented in the dataset
Glyma.13g362900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g362900
ParalogEvidenceComments
Glyma.15g010900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g362900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g43980 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g362900
>Glyma.13g362900.2 sequence-type=transcript locus=Glyma.13g362900 ID=Glyma.13g362900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTAAATGAAGGGTAGAGGAAAGTGACTTAATTTGACTGACTGACACGTGCGATGGGATGCCTCACGTGACAAATGTGTTGCGCCTGCGATCCATACATAGTCTGGGTTAGTAGAATAGAAGAAAAGGAGAATCTGAGATCGGAAGCATAACCATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAAGCCCTACACACAACACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCAGACTCTCCTCGCCCGCCACTTCACCGCCCAATCAGGTTTTCCTTCTCTCCATTTCCCCTATATATTGAATTGCTCGTTTCTTAATTCAATTTCGTTCTTGTTATCTCAATCAGGTGCTTCTTCCCTCAAAAAGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCCGATCTCGAGGGAAGGGATATTCTTGAAATAAACCATCCCGTAGGTCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGTGAAGGTGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTATAGAATGCCCAGTGTGCTCACAGTATTTTAAGTTGGAAGTGGTCGGCCCTGGTGGCGATCCTTATGGACATGGCGATCACGATCACCACTGATTGCATCCCGCAATTTCCTTCAGAAATAAAATTTGCAAAGAGAGACGTTTCCACCTTCCAAAATTACGAGGCtttttttttttttttttATAGAAAATTTCTGTGTTTATTTTTTCGATTCAGCTATCAAATCCTTTTAGGATTTTTGTTTTTTGACTCTGCCAAATAATTGATAGCAACACTATTCTTTTAACGATTCTTGGTTATGTAGAGCCTACAACTTTTTGAATCAACTAAATCACGAAAGGGATTATAAACTTGATCGTATTGAATAATTTTTGCATT

>Glyma.13g362900.3 sequence-type=transcript locus=Glyma.13g362900 ID=Glyma.13g362900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTAAATGAAGGGTAGAGGAAAGTGACTTAATTTGACTGACTGACACGTGCGATGGGATGCCTCACGTGACAAATGTGTTGCGCCTGCGATCCATACATAGTCTGGGTTAGTAGAATAGAAGAAAAGGAGAATCTGAGATCGGAAGCATAACCATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAAGCCCTACACACAACACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCAGACTCTCCTCGCCCGCCACTTCACCGCCCAATCAGGTGCTTCTTCCCTCAAAAAGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCCGATCTCGAGGGAAGGGATATTCTTGAAATAAACCATCCCGTAGGTCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGTGAAGGTGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTATAGAATGCCCAGTGTGCTCACAGTATTTTAAGTTGGAAGTGGTCGGCCCTGGTGGCGATCCTTATGGACATGGCGATCACGATCACCACTGATTGCATCCCGCAATTTCCTTCAGAAATAAAATTTGCAAAGAGAGACGTTTCCACCTTCCAAAATTACGAGGCtttttttttttttttttATAGAAAATTTCTGTGTTTATTTTTTCGATTCAGCTATCAAATCCTTTTAGGATTTTTGTTTTTTGACTCTGCCAAATAATTGATAGCAACACTATTCTTTTAACGATTCTTGGTTATGTAGAGCCTACAACTTTTTGAATCAACTAAATCACGAAAGGGATTATAAACTTGATCGTATTGAATAATTTTTGCATT
Coding sequences of Glyma.13g362900
>Glyma.13g362900.1 sequence-type=CDS polypeptide=Glyma.13g362900.1.p locus=Glyma.13g362900 ID=Glyma.13g362900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAAGCCCTACACACAACACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCAGACTCTCCTCGCCCGCCACTTCACCGCCCAATCAGGTGCTTCTTCCCTCAAAAAGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCCGATCTCGAGGGAAGGGATATTCTTGAAATAAACCATCCCGTAGGTCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGTGAAGGTGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTATAGAATGCCCAGTGTGCTCACAGTATTTTAAGGCTTTGGGTCCCTTTCCAATGTTTATCCAATATTATGAATTCTGTGAACACCCTGAAGTATATCACCACAAGACAGCAACATGCTATAACTGCAAAGGGCAGTGCATCTTTACAGCTTTTGTGTATATGAACGACAACTTGAAAATTCGATGA

>Glyma.13g362900.2 sequence-type=CDS polypeptide=Glyma.13g362900.2.p locus=Glyma.13g362900 ID=Glyma.13g362900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAAGCCCTACACACAACACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCAGACTCTCCTCGCCCGCCACTTCACCGCCCAATCAGGTTTTCCTTCTCTCCATTTCCCCTATATATTGAATTGCTCGTTTCTTAATTCAATTTCGTTCTTGTTATCTCAATCAGGTGCTTCTTCCCTCAAAAAGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCCGATCTCGAGGGAAGGGATATTCTTGAAATAAACCATCCCGTAGGTCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGTGAAGGTGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTATAGAATGCCCAGTGTGCTCACAGTATTTTAAGTTGGAAGTGGTCGGCCCTGGTGGCGATCCTTATGGACATGGCGATCACGATCACCACTGA

>Glyma.13g362900.3 sequence-type=CDS polypeptide=Glyma.13g362900.3.p locus=Glyma.13g362900 ID=Glyma.13g362900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTGGCGGAGACTCTTCTCTTCTTCAAACCTCAAAGCCCTACACACAACACTCTCTCCTTCTCGTCCCCGACTCGCCGCCCAGACTCTCCTCGCCCGCCACTTCACCGCCCAATCAGGTGCTTCTTCCCTCAAAAAGAGGGTTGAAGATGTCGTGCCAATTGCTACCGGCCACGAGCGTGAGGAGATTCAGGCCGATCTCGAGGGAAGGGATATTCTTGAAATAAACCATCCCGTAGGTCCTTTTGGCACAAAGGAAGCACCTGCTGTTGTTAAATCTTACTTTGACAGAAGGATAGTTGGATGCCCAGGAGATGAAGGTGAAGGTGAGCATGATGTTGTCTGGTTTTGGCTGGAGAAAGGCAAGCCTATAGAATGCCCAGTGTGCTCACAGTATTTTAAGTTGGAAGTGGTCGGCCCTGGTGGCGATCCTTATGGACATGGCGATCACGATCACCACTGA
Predicted protein sequences of Glyma.13g362900
>Glyma.13g362900.1.p sequence-type=predicted peptide transcript=Glyma.13g362900.1 locus=Glyma.13g362900 ID=Glyma.13g362900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRRLFSSSNLKALHTTLSPSRPRLAAQTLLARHFTAQSGASSLKKRVEDVVPIATGHEREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEGEGEHDVVWFWLEKGKPIECPVCSQYFKALGPFPMFIQYYEFCEHPEVYHHKTATCYNCKGQCIFTAFVYMNDNLKIR*

>Glyma.13g362900.2.p sequence-type=predicted peptide transcript=Glyma.13g362900.2 locus=Glyma.13g362900 ID=Glyma.13g362900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRRLFSSSNLKALHTTLSPSRPRLAAQTLLARHFTAQSGFPSLHFPYILNCSFLNSISFLLSQSGASSLKKRVEDVVPIATGHEREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEGEGEHDVVWFWLEKGKPIECPVCSQYFKLEVVGPGGDPYGHGDHDHH*

>Glyma.13g362900.3.p sequence-type=predicted peptide transcript=Glyma.13g362900.3 locus=Glyma.13g362900 ID=Glyma.13g362900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MWRRLFSSSNLKALHTTLSPSRPRLAAQTLLARHFTAQSGASSLKKRVEDVVPIATGHEREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEGEGEHDVVWFWLEKGKPIECPVCSQYFKLEVVGPGGDPYGHGDHDHH*






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