Glyma.13g360300

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.13g360300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.13g360300): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.13g360300

Feature Type:	gene_model
Chromosome:	Gm13
Start:	44739507
stop:	44742566
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g360300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G52380.1	AT	NUP50 (Nucleoporin 50 kDa) protein	JGI	N/A	IEA
GO:0046907	GO-bp	intracellular transport	EnsemblGenomes	N/A	IEA
GO:0046907	GO-bp	intracellular transport	JGI	N/A	IEA
GO:0005643	GO-cc	nuclear pore	EnsemblGenomes	N/A	IEA
GO:0005643	GO-cc	nuclear pore	JGI	N/A	IEA
GO:0008536	GO-mf	Ran GTPase binding	EnsemblGenomes	N/A	IEA
KOG2724	KOG	Nuclear pore complex component NPAP60L/NUP50	JGI	N/A	IEA
PTHR23138	Panther	RAN BINDING PROTEIN	JGI	N/A	IEA
PTHR23138:SF52	Panther		JGI	N/A	IEA
PF00638	PFAM	RanBP1 domain	JGI	N/A	IEA
PF08911	PFAM	NUP50 (Nucleoporin 50 kDa)	JGI	N/A	IEA

Expression Patterns of Glyma.13g360300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g360300 not represented in the dataset	Glyma.13g360300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g360300

Paralog	Evidence	Comments
Glyma.15g013600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g360300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g43700	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g360300

Limit To All Plant Sequences

>Glyma.13g360300.2 sequence-type=transcript locus=Glyma.13g360300 ID=Glyma.13g360300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ttgcactctccactctttatctcttcattccttcttcttacatcttttcttctcatttttaatctttactttttttcttctttttttttctcgccgttgtaacagaatatcacgattttcgtttcgccaattcgtgaaatcgaaagattcccacagaattgtacgaattattgttcatttttttgtctCTACTGTCGTGCTCCAACTTGGTAAACTAGAAGTTCATTTATTGTTTTCATTCTTCAATGGGGGATGCTGAGAATGCCCTTCCACCTACAAAGAAAAGGGCTGCTGGAAGGGAGCTCACTCGAGACACTCCCATTGATGATGAGGAAGATGCCCCCGAGCTTGAGACTGGCACTTTCAAGAGAGCCAGTGAAGAGGTTCTGGCAACCAGAAGGATGGTCACAATTCGTCGCAAACAGACTAATTCTGCTCCTTCTGCAAATCCTTTTGCTGGAATACGCCTGGTTGCTCCCACTGAATCATGTGATAATCCTGCTGAGATTACTACTGAAGTACAATCAGCTGGTGAGAACGCTGTTTCACATGATTCAAAAAGTGATGAAGGTATAGCTAAGGATTCCAAGAAAGCTGAAGATGGGAAAACTAAGCAGTCAGAGTTCAAATCTGATGAGGCAGAGGATAAAGCTACTGAAGGTAAGGATGCTGCAGAAGAAAGCAATGCAAACAAAGAGCATACTGAAGAAAAGGAAAGTTCTGATGACAAATCTGAGGTAGATAAAGAACAAAAAAAGGATGTCACTGAAAGTGGAAATGAGGCTAAGAAGGATGCTACACACAACGAGAGTGCCAGCAAGTTAGATAAAGAACAAACTGGGGATGGCAAGGATTCTGAAAACGATGATGATAAGAATGAGAACACTGACAATGTGGATAAGAAGGACAGCAAAGCTGAAAGTGCAGAGCCAAGTGCTGAAGGTGGCCATTTGAAGTCATTTCAACTGCTCTCAAGTAGCCAAAATGCCTTTACAGGTCTTGCTGGTACTGGATTTTCTAATTCCTCATTTTCCTTTGGTTCCATTTCAAATGAAGGGTCTGGTTCTATTTTTGGACTGAAAAGTGATAAGCCTTTTGGTCTTGGTTTATCTAACAATGGAAGTTCTCTTTTGGGGGCATCTGGGGCCTCTGCTATTTCTAAGAATGAGGGAAGTGGTTTAGCAATGCAGGAGGTTATAGTTGAAACCGGGGAGGAAAATGAGAAAGTGGTTTTTAATGCAGACTCAGTATTGTTTGAGTTTGCTGATGGAAGTTGGAAGGAACGTGGAAAGGGAGAACTGAAGGTTAATGTTGCCAGTGAAACCAAAAAAGCCAGACTTCTTATGAGGTCAAAGGGAAATTATAGATTGATTTTGAATGCACGACTTTACCCTGATATGAAGCTCACAAATATGGACAAGAAGGGTGTTACTTTTGCCTGCCTCAATAGTGCCAGCGAAGGGAAAGGTGGTCTTTCAACATTTGCCTTGAAGTTCAAGGATGGCTCCATAGTGGAGGAATTTAAAGCCGCTGTTATGGAACACAAAGGTGAGACATCCACAGTTCTTAAGACCCCTGAAAATTCTCCAAAGGCTTCTGATGATTGATAGACACTCCTTACTCATGCCTCATAAAGTCTGTCTTCACAAAGATAATTTGCTATTCTGAGTTCGTTTGCCCTTGTGTGGCATAGTCTATTATAGTCAAATTAGTGTACTTGAATTTGAGTCAAGTCTCCAACTGATAATGGAACTTAATTTTGGATTTAGACTCTACACAGTTTTAACGCTTGAACCCTGAAACGTTCAATAGTGCTGTTATTTCTTGAGCCTGGAATTTTGTCAAATTTCAAAATGACATATATTGAACTTTGCTATTGTGATGTTACCGTGACAAGATCACTTTTTAATTGAAATAAAAACTACTTTATTTT

Coding sequences of Glyma.13g360300

Limit To All Plant Sequences

>Glyma.13g360300.1 sequence-type=CDS polypeptide=Glyma.13g360300.1.p locus=Glyma.13g360300 ID=Glyma.13g360300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGATGCTGAGAATGCCCTTCCACCTACAAAGAAAAGGGCTGCTGGAAGGGAGCTCACTCGAGACACTCCCATTGATGATGAGGAAGATGCCCCCGAGCTTGAGACTGGCACTTTCAAGAGAGCCAGTGAAGAGGTTCTGGCAACCAGAAGGATGGTCACAATTCGTCGCAAACAGACTAATTCTGCTCCTTCTGCAAATCCTTTTGCTGGAATACGCCTGGTTGCTCCCACTGAATCATGTGATAATCCTGCTGAGATTACTACTGAAGTACAATCAGCTGGTGAGAACGCTGTTTCACATGATTCAAAAAGTGATGAAGGTATAGCTAAGGATTCCAAGAAAGCTGAAGATGGGAAAACTAAGCAGTCAGAGTTCAAATCTGATGAGGCAGAGGATAAAGCTACTGAAGGTAAGGATGCTGCAGAAGAAAGCAATGCAAACAAAGAGCATACTGAAGAAAAGGAAAGTTCTGATGACAAATCTGAGGTAGATAAAGAACAAAAAAAGGATGTCACTGAAAGTGGAAATGAGGCTAAGAAGGATGCTACACACAACGAGAGTGCCAGCAAGTTAGATAAAGAACAAACTGGGGATGGCAAGGATTCTGAAAACGATGATGATAAGAATGAGAACACTGACAATGTGGATAAGAAGGACAGCAAAGCTGAAAGTGCAGAGCCAAGTGCTGAAGGTGGCCATTTGAAGTCATTTCAACTGCTCTCAAGTAGCCAAAATGCCTTTACAGGTCTTGCTGGTACTGGATTTTCTAATTCCTCATTTTCCTTTGGTTCCATTTCAAATGAAGGGTCTGGTTCTATTTTTGGACTGAAAAGTGATAAGCCTTTTGGTCTTGGTTTATCTAACAATGGAAGTTCTCTTTTGGGGGCATCTGGGGCCTCTGCTATTTCTAAGAATGAGGGAAGTGGTTTAGCAATGCAGGAGGTTATAGTTGAAACCGGGGAGGAAAATGAGAAAGTGGTTTTTAATGCAGACTCAGTATTGTTTGAGTTTGCTGATGGAAGTTGGAAGGAACGTGGAAAGGGAGAACTGAAGGTTAATGTTGCCAGTGAAACCAAAAAAGCCAGACTTCTTATGAGGTCAAAGGGAAATTATAGATTGATTTTGAATGCACGACTTTACCCTGATATGAAGCTCACAAATATGGACAAGAAGGGTGTTACTTTTGCCTGCCTCAATAGTGCCAGCGAAGGGAAAGGTGGTCTTTCAACATTTGCCTTGAAGTTCAAGGATGGCTCCATAGTGGAGGAATTTAAAGCCGCTGTTATGGAACACAAAGGTGAGACATCCACAGTTCTTAAGACCCCTGAAAATTCTCCAAAGGCTTCTGATGATTGA

>Glyma.13g360300.2 sequence-type=CDS polypeptide=Glyma.13g360300.2.p locus=Glyma.13g360300 ID=Glyma.13g360300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGGGATGCTGAGAATGCCCTTCCACCTACAAAGAAAAGGGCTGCTGGAAGGGAGCTCACTCGAGACACTCCCATTGATGATGAGGAAGATGCCCCCGAGCTTGAGACTGGCACTTTCAAGAGAGCCAGTGAAGAGGTTCTGGCAACCAGAAGGATGGTCACAATTCGTCGCAAACAGACTAATTCTGCTCCTTCTGCAAATCCTTTTGCTGGAATACGCCTGGTTGCTCCCACTGAATCATGTGATAATCCTGCTGAGATTACTACTGAAGTACAATCAGCTGGTGAGAACGCTGTTTCACATGATTCAAAAAGTGATGAAGGTATAGCTAAGGATTCCAAGAAAGCTGAAGATGGGAAAACTAAGCAGTCAGAGTTCAAATCTGATGAGGCAGAGGATAAAGCTACTGAAGGTAAGGATGCTGCAGAAGAAAGCAATGCAAACAAAGAGCATACTGAAGAAAAGGAAAGTTCTGATGACAAATCTGAGGTAGATAAAGAACAAAAAAAGGATGTCACTGAAAGTGGAAATGAGGCTAAGAAGGATGCTACACACAACGAGAGTGCCAGCAAGTTAGATAAAGAACAAACTGGGGATGGCAAGGATTCTGAAAACGATGATGATAAGAATGAGAACACTGACAATGTGGATAAGAAGGACAGCAAAGCTGAAAGTGCAGAGCCAAGTGCTGAAGGTGGCCATTTGAAGTCATTTCAACTGCTCTCAAGTAGCCAAAATGCCTTTACAGGTCTTGCTGGTACTGGATTTTCTAATTCCTCATTTTCCTTTGGTTCCATTTCAAATGAAGGGTCTGGTTCTATTTTTGGACTGAAAAGTGATAAGCCTTTTGGTCTTGGTTTATCTAACAATGGAAGTTCTCTTTTGGGGGCATCTGGGGCCTCTGCTATTTCTAAGAATGAGGGAAGTGGTTTAGCAATGCAGGAGGTTATAGTTGAAACCGGGGAGGAAAATGAGAAAGTGGTTTTTAATGCAGACTCAGTATTGTTTGAGTTTGCTGATGGAAGTTGGAAGGAACGTGGAAAGGGAGAACTGAAGGTTAATGTTGCCAGTGAAACCAAAAAAGCCAGACTTCTTATGAGGTCAAAGGGAAATTATAGATTGATTTTGAATGCACGACTTTACCCTGATATGAAGCTCACAAATATGGACAAGAAGGGTGTTACTTTTGCCTGCCTCAATAGTGCCAGCGAAGGGAAAGGTGGTCTTTCAACATTTGCCTTGAAGTTCAAGGATGGCTCCATAGTGGAGGAATTTAAAGCCGCTGTTATGGAACACAAAGGTGAGACATCCACAGTTCTTAAGACCCCTGAAAATTCTCCAAAGGCTTCTGATGATTGA

Predicted protein sequences of Glyma.13g360300

Limit To All Plant Sequences

>Glyma.13g360300.1.p sequence-type=predicted peptide transcript=Glyma.13g360300.1 locus=Glyma.13g360300 ID=Glyma.13g360300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDAENALPPTKKRAAGRELTRDTPIDDEEDAPELETGTFKRASEEVLATRRMVTIRRKQTNSAPSANPFAGIRLVAPTESCDNPAEITTEVQSAGENAVSHDSKSDEGIAKDSKKAEDGKTKQSEFKSDEAEDKATEGKDAAEESNANKEHTEEKESSDDKSEVDKEQKKDVTESGNEAKKDATHNESASKLDKEQTGDGKDSENDDDKNENTDNVDKKDSKAESAEPSAEGGHLKSFQLLSSSQNAFTGLAGTGFSNSSFSFGSISNEGSGSIFGLKSDKPFGLGLSNNGSSLLGASGASAISKNEGSGLAMQEVIVETGEENEKVVFNADSVLFEFADGSWKERGKGELKVNVASETKKARLLMRSKGNYRLILNARLYPDMKLTNMDKKGVTFACLNSASEGKGGLSTFALKFKDGSIVEEFKAAVMEHKGETSTVLKTPENSPKASDD*

>Glyma.13g360300.2.p sequence-type=predicted peptide transcript=Glyma.13g360300.2 locus=Glyma.13g360300 ID=Glyma.13g360300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGDAENALPPTKKRAAGRELTRDTPIDDEEDAPELETGTFKRASEEVLATRRMVTIRRKQTNSAPSANPFAGIRLVAPTESCDNPAEITTEVQSAGENAVSHDSKSDEGIAKDSKKAEDGKTKQSEFKSDEAEDKATEGKDAAEESNANKEHTEEKESSDDKSEVDKEQKKDVTESGNEAKKDATHNESASKLDKEQTGDGKDSENDDDKNENTDNVDKKDSKAESAEPSAEGGHLKSFQLLSSSQNAFTGLAGTGFSNSSFSFGSISNEGSGSIFGLKSDKPFGLGLSNNGSSLLGASGASAISKNEGSGLAMQEVIVETGEENEKVVFNADSVLFEFADGSWKERGKGELKVNVASETKKARLLMRSKGNYRLILNARLYPDMKLTNMDKKGVTFACLNSASEGKGGLSTFALKFKDGSIVEEFKAAVMEHKGETSTVLKTPENSPKASDD*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain