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Report for Sequence Feature Glyma.13g355300

Feature Type:gene_model
Chromosome:Gm13
Start:44390574
stop:44395551
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g355300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16310.1AT mitotic phosphoprotein N' end (MPPN) family protein JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006607GO-bp NLS-bearing protein import into nucleus EnsemblGenomesN/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0006913GO-bp nucleocytoplasmic transport EnsemblGenomesN/AIEA
GO:0006999GO-bp nuclear pore organization EnsemblGenomesN/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0051028GO-bp mRNA transport EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005643GO-cc nuclear pore EnsemblGenomesN/AIEA
GO:0031965GO-cc nuclear membrane EnsemblGenomesN/AIEA
GO:0044613GO-cc nuclear pore central transport channel EnsemblGenomesN/AIEA
GO:0044615GO-cc nuclear pore nuclear basket EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003697GO-mf single-stranded DNA binding EnsemblGenomesN/AIEA
GO:0005543GO-mf phospholipid binding EnsemblGenomesN/AIEA
KOG4285 KOG Mitotic phosphoprotein JGI N/AIEA
PTHR21527Panther FAMILY NOT NAMED JGI N/AIEA
PTHR21527:SF2Panther JGI N/AIEA
PF05172PFAM Nup53/35/40-type RNA recognition motif JGI N/AIEA

Expression Patterns of Glyma.13g355300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g355300 not represented in the dataset
Glyma.13g355300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g355300
ParalogEvidenceComments
Glyma.15g018900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g355300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g43170 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g355300
>Glyma.13g355300.2 sequence-type=transcript locus=Glyma.13g355300 ID=Glyma.13g355300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCTCCCCAAGGAGGAATTCCGAACCCTTTGGTGTAGTTTATATATGTTTGGTGTAGTTTCAAGTATTATTGCTGTATCGATGCTTCTAGATGCCCAAATCGCGGCTCCACCTAGCTCATAGGTAGTAATTCCGTTCCCTTGAATAAATAACATGAGCACCACAGTGCAAAGAACTCCAAGATCCAGCAGGCATTCTTTATTTTTCCAGGATTTGGCTTCACCTGTTTCTGCCCGTAGAGGAAAATTTTCGAGTCCAGGTCAAGCAGCTGCAGTATCTTCACTATGGCGTGAGAACTTTGGTAGTTCAGACCTTCCTCCGCCTCCTGTTTTCACCTTGGAAGACAGATCCGATTTTTCTCCTGAATCAGGCATACTAGATTATCAAATATCCCCTGAGGCTAAGTCAGACACTAGAACTCCCATCCAAACTTCAAATAAGGAGTTTTCAACTCCACTGAAAAGCAAATCTGAGGCCAGCACATCTTATGCTTTGAGAGGGGTACAACAAAACCAACAGGGCTCGCCGGGTTTGAGTTGGTGGTCACCTACAACTGCAAAGAGTGTTGGGGAACAAGATGAGAAGGGAAGAAGTTCGCCAGTTGAGGGTGTGGTTCAGCCTGGTGCTCTGATAACTCTTCCTCCACCGCTGGAAGTGGCAAGGCCTGAGGTTCAAAGAAATTCTTTGCCAGCAGGGAATCTCAATGAGGAAGAATGGGTAACTGTGTATGGATTTTCCCCCGGTGATACTAACATGGTGTTAAGGGAGTTTGAAAAATGCGGTGAAATTTTGAAACATGTTCCTGGTCCTAGAGATGCTAACTGGGTGCACATTTTGTATCAGAATCGATCTGATGCCCATAAAGCTCTCAACAAGAATGGAATGCAAATTAATGGAGTACTAATTGTTGGTGTGAAACTGTTGGATCCCATGCAACGCCAAGCTTTAAATGAAAGGCTTAAGAATCAGGGATTTATGCCGTTACCTCTAGCCTCTGCCAGAAACTCAGAAGTGAGCACATTGAAAGCTCCTTCTCGACCTTACTATCTGCAGAATGGCAACTCAACTGCACGGCAGACTGGAGGAACCATTGCTTCCCCAACAAAATCATTGGTGTCCAAGATCATGGACTTGATGTTTGGAGTCTAAATTAGCTGTTCTGCTGAATCAAACTAATATCTTTCTGTTTGTTGTAAGCAATGATTTTATTCTCTCGATTATTCATACTTTTTGAAGTGTTCGGCATGTCTTGTTCATTGAATTGAGTTGGAATGTTTACTCTATGGATCTCAATTGTCAGAATATATGGCATTTTAATATATCAATCTTATGGATGGTTATAGTATAGAAGAACAGTACTCATTAGCCTATGTTTTGAGAAATGAG
Coding sequences of Glyma.13g355300
>Glyma.13g355300.1 sequence-type=CDS polypeptide=Glyma.13g355300.1.p locus=Glyma.13g355300 ID=Glyma.13g355300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCACCACAGTGCAAAGAACTCCAAGATCCAGCAGGCATTCTTTATTTTTCCAGGATTTGGCTTCACCTGTTTCTGCCCGTAGAGGAAAATTTTCGAGTCCAGGTCAAGCAGCTGCAGTATCTTCACTATGGCGTGAGAACTTTGGTAGTTCAGACCTTCCTCCGCCTCCTGTTTTCACCTTGGAAGACAGATCCGATTTTTCTCCTGAATCAGGCATACTAGATTATCAAATATCCCCTGAGGCTAAGTCAGACACTAGAACTCCCATCCAAACTTCAAATAAGGAGTTTTCAACTCCACTGAAAAGCAAATCTGAGGCCAGCACATCTTATGCTTTGAGAGGGGTACAACAAAACCAACAGGGCTCGCCGGGTTTGAGTTGGTGGTCACCTACAACTGCAAAGAGTGTTGGGGAACAAGATGAGAAGGGAAGAAGTTCGCCAGTTGAGGGTGTGGTTCAGCCTGGTGCTCTGATAACTCTTCCTCCACCGCTGGAAGTGGCAAGGCCTGAGGTTCAAAGAAATTCTTTGCCAGCAGGGAATCTCAATGAGGAAGAATGGGTAACTGTGTATGGATTTTCCCCCGGTGATACTAACATGGTGTTAAGGGAGTTTGAAAAATGCGGTGAAATTTTGAAACATGTTCCTGGTCCTAGAGATGCTAACTGGGTGCACATTTTGTATCAGAATCGATCTGATGCCCATAAAGCTCTCAACAAGAATGGAATGCAAATTAATGGAGTACTAATTGTTGGTGTGAAACTGTTGGATCCCATGCAACGCCAAGCTTTAAATGAAAGGCTTAAGAATCAGGGATTTATGCCGTTACCTCTAGCCTCTGCCAGAAACTCAGAAGTGAGCACATTGAAAGCTCCTTCTCGACCTTACTATCTGCAGAATGGCAACTCAACTGCACGGCAGACTGGAGGAACCATTGCTTCCCCAACAAAATCATTGGTGTCCAAGATCATGGACTTGATGTTTGGAGTCTAA

>Glyma.13g355300.2 sequence-type=CDS polypeptide=Glyma.13g355300.2.p locus=Glyma.13g355300 ID=Glyma.13g355300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGCACCACAGTGCAAAGAACTCCAAGATCCAGCAGGCATTCTTTATTTTTCCAGGATTTGGCTTCACCTGTTTCTGCCCGTAGAGGAAAATTTTCGAGTCCAGGTCAAGCAGCTGCAGTATCTTCACTATGGCGTGAGAACTTTGGTAGTTCAGACCTTCCTCCGCCTCCTGTTTTCACCTTGGAAGACAGATCCGATTTTTCTCCTGAATCAGGCATACTAGATTATCAAATATCCCCTGAGGCTAAGTCAGACACTAGAACTCCCATCCAAACTTCAAATAAGGAGTTTTCAACTCCACTGAAAAGCAAATCTGAGGCCAGCACATCTTATGCTTTGAGAGGGGTACAACAAAACCAACAGGGCTCGCCGGGTTTGAGTTGGTGGTCACCTACAACTGCAAAGAGTGTTGGGGAACAAGATGAGAAGGGAAGAAGTTCGCCAGTTGAGGGTGTGGTTCAGCCTGGTGCTCTGATAACTCTTCCTCCACCGCTGGAAGTGGCAAGGCCTGAGGTTCAAAGAAATTCTTTGCCAGCAGGGAATCTCAATGAGGAAGAATGGGTAACTGTGTATGGATTTTCCCCCGGTGATACTAACATGGTGTTAAGGGAGTTTGAAAAATGCGGTGAAATTTTGAAACATGTTCCTGGTCCTAGAGATGCTAACTGGGTGCACATTTTGTATCAGAATCGATCTGATGCCCATAAAGCTCTCAACAAGAATGGAATGCAAATTAATGGAGTACTAATTGTTGGTGTGAAACTGTTGGATCCCATGCAACGCCAAGCTTTAAATGAAAGGCTTAAGAATCAGGGATTTATGCCGTTACCTCTAGCCTCTGCCAGAAACTCAGAAGTGAGCACATTGAAAGCTCCTTCTCGACCTTACTATCTGCAGAATGGCAACTCAACTGCACGGCAGACTGGAGGAACCATTGCTTCCCCAACAAAATCATTGGTGTCCAAGATCATGGACTTGATGTTTGGAGTCTAA
Predicted protein sequences of Glyma.13g355300
>Glyma.13g355300.1.p sequence-type=predicted peptide transcript=Glyma.13g355300.1 locus=Glyma.13g355300 ID=Glyma.13g355300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTTVQRTPRSSRHSLFFQDLASPVSARRGKFSSPGQAAAVSSLWRENFGSSDLPPPPVFTLEDRSDFSPESGILDYQISPEAKSDTRTPIQTSNKEFSTPLKSKSEASTSYALRGVQQNQQGSPGLSWWSPTTAKSVGEQDEKGRSSPVEGVVQPGALITLPPPLEVARPEVQRNSLPAGNLNEEEWVTVYGFSPGDTNMVLREFEKCGEILKHVPGPRDANWVHILYQNRSDAHKALNKNGMQINGVLIVGVKLLDPMQRQALNERLKNQGFMPLPLASARNSEVSTLKAPSRPYYLQNGNSTARQTGGTIASPTKSLVSKIMDLMFGV*

>Glyma.13g355300.2.p sequence-type=predicted peptide transcript=Glyma.13g355300.2 locus=Glyma.13g355300 ID=Glyma.13g355300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTTVQRTPRSSRHSLFFQDLASPVSARRGKFSSPGQAAAVSSLWRENFGSSDLPPPPVFTLEDRSDFSPESGILDYQISPEAKSDTRTPIQTSNKEFSTPLKSKSEASTSYALRGVQQNQQGSPGLSWWSPTTAKSVGEQDEKGRSSPVEGVVQPGALITLPPPLEVARPEVQRNSLPAGNLNEEEWVTVYGFSPGDTNMVLREFEKCGEILKHVPGPRDANWVHILYQNRSDAHKALNKNGMQINGVLIVGVKLLDPMQRQALNERLKNQGFMPLPLASARNSEVSTLKAPSRPYYLQNGNSTARQTGGTIASPTKSLVSKIMDLMFGV*






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