SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.13g353500

Feature Type:gene_model
Chromosome:Gm13
Start:44204963
stop:44209251
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g353500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G16480.1AT mitochondrial processing peptidase alpha subunit JGI N/AIEA
GO:0006627GO-bp protein processing involved in protein targeting to mitochondrion EnsemblGenomesN/AIEA
GO:0005743GO-cc mitochondrial inner membrane EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004222GO-mf metalloendopeptidase activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG2067 KOG Mitochondrial processing peptidase, alpha subunit JGI N/AIEA
PTHR11851Panther METALLOPROTEASE JGI N/AIEA
PTHR11851:SF69Panther PROTEIN MPPB-1 JGI N/AIEA
PF00675PFAM Insulinase (Peptidase family M16) JGI N/AIEA
PF05193PFAM Peptidase M16 inactive domain JGI N/AIEA
GN7V-61107SoyCyc9-rxn ubiquinol-cytochrome-c reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g353500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g353500
ParalogEvidenceComments
Glyma.15g020800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g353500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g43000 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g353500
>Glyma.13g353500.1 sequence-type=CDS polypeptide=Glyma.13g353500.1.p locus=Glyma.13g353500 ID=Glyma.13g353500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTACAGAGCAGTATCTTCACGTCTCACCCTTCCCAAGGGCAATGGGAGAACCTTGGGAGCCTCAAGAGGTTTATTCAGGTGGCTTACTGGGGAATCTTCCAATCCTCTTCCTCCTCTTGATACCCCACTTAGAGGGGTTTCCCTGCCACCTTCACTGCCAGATTTTGTTGAACCAAGCAACACCAAGATCACAACTCTCCCCAATGGTCTAAAAATAGCATCAGAAACCTCACCAAACCCTGCTGCCTCAATTGGGTTATATCTTGACTGTGGTTCACTCTATGAGACGCCATTGTCAAGCGGGGCGTCTCTCCTGCTAGAGAAAATGTCCTTCAAGAGCACGGCAAACCGAAGTCACTTTCGTGTTGTGAGGGAAGTAGAAGCAATTGGTGGCAATGTAGGAGCCTCAGCCTCTCGCGAGCAGATGGGCTACACTTTTGATGCTTTAAAAACTTATGTTCCACAAATGATTGAGTTGTTGATTGACTGTGTAAGGAACCCGGCCTTCTTGGATTGGGAGGTCAATGAAGAGCTTCGAAAGGTGAAAGCAGAGCTTGGAGAACTATCAAACAATCCCCAGGGCTTACTTTTGGAGGCAGTTCACTCTGCTGGTTATTCTGGGGCATTGGCTAATCCACTTTTGGCTTCTGAAACAGCACTTAACAGATTAAATAGCTCCCTTTTAGAGGAATTTGTTGCTGAGAACTATACTGCATCTAGGATGGTACTTGCAGCATCTGGGGTTGAGCATGAAGAACTTTTGTCTGTTGCTGAACCACTTCTCTCTGATCTACCAAGTGTTCCCCGTCCTGAAGAACCAAAATCTAACTATGTTGGTGGAGATTTCCGTCGTCAAGGTGAATCAGGGGTTGCACGTGTAGCTATTGCTTTTGAAGTGCCTGGTGGCTGGAAAAAAGAGAAAGAAGCTATTGCTTTGACTATTCTACAGATGCTTATGGGAGGAGGTGGGTCGTTCTCTGCTGGAGGGCCTGGAAAAGGGATGCATTCAAGGCTGTTTCTTCGTGTCTTGAATGAACATCAACAGATTCATTCTTTTTCTGCATTCAACAGTCTCTTCAACAATACAGGGCTATTTGGCATATATGCAAGCACAGGCTCTGATTTTGTGGCAAAAGCTGTGGATTTAGCAGCCAGAGAATTAATAGCAATTGCATCACCGGGACAAGTTACACAGGTACAACTTGACCTTGCCAAGTTATCCACTAAGTCTGCAGTTCTAATGAATTTAGAGTCCAGAATGATTGCATCAGAGGATATAGGAAGGCAAGTATTGACTTATGGAGAAAGGAAGCCACTGGAGCAGTTCTTAAATGCAGTAGATGGAATCACTTTGAATGATATCACTAAAATTTCTCAGAAGATTATTTCCTCACCTCTCACTATGGCATCATATGGGGATGTTTTCAATGTTCCCTGTTACGAATCCGTTAGCAGGAAGTTCCATGCAAAATGA
Predicted protein sequences of Glyma.13g353500
>Glyma.13g353500.1.p sequence-type=predicted peptide transcript=Glyma.13g353500.1 locus=Glyma.13g353500 ID=Glyma.13g353500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MYRAVSSRLTLPKGNGRTLGASRGLFRWLTGESSNPLPPLDTPLRGVSLPPSLPDFVEPSNTKITTLPNGLKIASETSPNPAASIGLYLDCGSLYETPLSSGASLLLEKMSFKSTANRSHFRVVREVEAIGGNVGASASREQMGYTFDALKTYVPQMIELLIDCVRNPAFLDWEVNEELRKVKAELGELSNNPQGLLLEAVHSAGYSGALANPLLASETALNRLNSSLLEEFVAENYTASRMVLAASGVEHEELLSVAEPLLSDLPSVPRPEEPKSNYVGGDFRRQGESGVARVAIAFEVPGGWKKEKEAIALTILQMLMGGGGSFSAGGPGKGMHSRLFLRVLNEHQQIHSFSAFNSLFNNTGLFGIYASTGSDFVAKAVDLAARELIAIASPGQVTQVQLDLAKLSTKSAVLMNLESRMIASEDIGRQVLTYGERKPLEQFLNAVDGITLNDITKISQKIISSPLTMASYGDVFNVPCYESVSRKFHAK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo