Glyma.13g352500

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Report for Sequence Feature Glyma.13g352500

Feature Type:	gene_model
Chromosome:	Gm13
Start:	44137637
stop:	44142155
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g352500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G21300.1	AT	RNA methyltransferase family protein	JGI	N/A	IEA
GO:0001510	GO-bp	RNA methylation	EnsemblGenomes	N/A	IEA
GO:0001510	GO-bp	RNA methylation	JGI	N/A	IEA
GO:0006396	GO-bp	RNA processing	EnsemblGenomes	N/A	IEA
GO:0006396	GO-bp	RNA processing	JGI	N/A	IEA
GO:0009452	GO-bp	7-methylguanosine RNA capping	JGI	N/A	IEA
GO:0032259	GO-bp	methylation	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
GO:0008168	GO-mf	methyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0008168	GO-mf	methyltransferase activity	JGI	N/A	IEA
GO:0008173	GO-mf	RNA methyltransferase activity	EnsemblGenomes	N/A	IEA
GO:0008173	GO-mf	RNA methyltransferase activity	JGI	N/A	IEA
GO:0016740	GO-mf	transferase activity	EnsemblGenomes	N/A	IEA
KOG2187	KOG	tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes	JGI	N/A	IEA
PTHR11061	Panther	RNA M5U METHYLTRANSFERASE FAMILY	JGI	N/A	IEA
PTHR11061:SF2	Panther		JGI	N/A	IEA
PF05958	PFAM	tRNA (Uracil-5-)-methyltransferase	JGI	N/A	IEA

Expression Patterns of Glyma.13g352500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g352500 not represented in the dataset	Glyma.13g352500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g352500

Paralog	Evidence	Comments
Glyma.15g022200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g352500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g42891	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g352500

Limit To All Plant Sequences

>Glyma.13g352500.2 sequence-type=transcript locus=Glyma.13g352500 ID=Glyma.13g352500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCCAATCTAACATATAGTTAGTTAGCTAGCTTACCTGTCCGCCGCGAAAGTGAGCATTGGACTGCGCAGGGTGCAGAAAAGAGGGAAGAGGAGAGTGAAACCGCGAAATGACGAGCATTTCGTATCTAACCAACACTCTGCTGCCACTGCACATCCGAAGGTTTCGGCCTTCTCTATCCACTCTCTCTTGCTCTCTGGCCTCAGATGTGGACCCCACTCCCAATTCCTACTTCCCCAAGCGCGGCCAAACCCTCGAACTGGTGTGCGAGTCCCTTGCCTTCAAAGGGAAGGGCCTCTGCAAGGTCACCCAAACCGGCTTCGTTGTCCTCTGCGACCGCGCCCTTCCTGGCGAACACTTCATCGGCCGCGTCACCCGCAAAAAAGGCAATTACGCTGAGGTAACTAAGGTCAAGACCATAACTCCTCCTCGTGACATTGTCGATGCTCCTTGTGTCTACGCTCCTTATTGCGGCGGCTGCAAGACGCAAAACTTGTCCTACGAGGCTCAGCTCAGAGCCAAGGAGGAGCAGGTACGCGACTTGCTCATTCACGTCGGAAAGTTTTCTCTCCAACATCTCCAACTGCACGCCGTTCTGAAGCCCATTGTTCCTTGTCGTATTCAGTTTCATTACAGGAATAAGATGGAATTCTCGTTTGGTCCCCAAAGATGGTTGCCTAAAGAATCACTGCAAGACAGAATCGTTGATGATGATACTAATGAAAATTATGCGCTGGGCTTGCATGCTCCGGGTTTCTTTGATAAAATTCTAAATGTTGACAACTGCTTACTGCAATCTCATCCTGCTAATAAGGTACTTGCAGCTGTCCAAGAATGTTGGAGAGATCCACAACTTGGTTTTTCTCCCTATAATGTTCATTCGCACAAGGGATTTCTTAAGCATTTGATGCTGAGAACGGGAAGGGATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGTTGAAGTTCCTAGTTGATAAAGTTTCCGTATTTCCTGAAGTGGTAAGTGTCATTAATAATGTAAATACTTCTGTTGGCAACACATCTGTTGGGGAGGAAGAATACACTTTGTATGGGAAATCTAGCATTACAGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGGCAGAGGTTTTATACAAGCTTATAGAAGATTGTGCTGGAGTCAAGGGTGACGACTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGTGTTAGGCATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCTCGTCTTAATGCCAAGATAAATGGAATACAAAATGCAACATTTGTCCAGGGAGATCTCAATAAAATTGATGAGAATTTTGGGAAGAATTTTCCTAAACCTGACATTGTCATTTCAGATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGGTTTTGTGCAGGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTTGACATGTTCCCACACACCCCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTCAGTAATCTGTGATCAATTAAAACGTTCCATTTCAAGGGGATTACAAGCTTAATACAAGATGCAACTCAAGGTTGGGTCTTCAAGGTGATTGATAGGAAAACTCATACTTTTATGCTGCAAAGTGTGCCTAATGCTTTGCCTACCCAAAACTACTGCATCAGTGTACAAATACAAAATCATTATGAATGGTGGTAACATTGGCAAGCATGCAGGGATCACATCGTTGCAACCTTGTAAAAGTTTCTCATACATTTCCATTTATGCAGAGCCCAAAAGGTTTTGGATTTATGCAGAGCCCAAAAGTATTCAGCGTGCATATAAATAGATCATATTCTTCTCTTCATTTCTTTATCTTTAGAAAGAAGACCAAGTGCTAATTTTGTGGCTCTGTATGAAAAAAAATGTACTGACTGGGGTATGCTTTCAAGTAATTTTGCATTGTGTATTTGTACTGTTATTAGTCCTGTGAAAagggggagagagaccaagaatgacattggaagaagttatcaaaagggatatcagtgaataatatatttagggattttttctttaaccaagcctaatagtgccgtgtgatccaagtagctgattttacctaatgagataataattttttttgttgtatttgtACTTCTATTCCAGGCCTGTTTTCCCTGAGATAAAAGGGAACTATTCAAACT

Coding sequences of Glyma.13g352500

Limit To All Plant Sequences

>Glyma.13g352500.1 sequence-type=CDS polypeptide=Glyma.13g352500.1.p locus=Glyma.13g352500 ID=Glyma.13g352500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGAGCATTTCGTATCTAACCAACACTCTGCTGCCACTGCACATCCGAAGGTTTCGGCCTTCTCTATCCACTCTCTCTTGCTCTCTGGCCTCAGATGTGGACCCCACTCCCAATTCCTACTTCCCCAAGCGCGGCCAAACCCTCGAACTGGTGTGCGAGTCCCTTGCCTTCAAAGGGAAGGGCCTCTGCAAGGTCACCCAAACCGGCTTCGTTGTCCTCTGCGACCGCGCCCTTCCTGGCGAACACTTCATCGGCCGCGTCACCCGCAAAAAAGGCAATTACGCTGAGGTAACTAAGGTCAAGACCATAACTCCTCCTCGTGACATTGTCGATGCTCCTTGTGTCTACGCTCCTTATTGCGGCGGCTGCAAGACGCAAAACTTGTCCTACGAGGCTCAGCTCAGAGCCAAGGAGGAGCAGGTACGCGACTTGCTCATTCACGTCGGAAAGTTTTCTCTCCAACATCTCCAACTGCACGCCGTTCTGAAGCCCATTGTTCCTTGTCGTATTCAGTTTCATTACAGGAATAAGATGGAATTCTCGTTTGGTCCCCAAAGATGGTTGCCTAAAGAATCACTGCAAGACAGAATCGTTGATGATGATACTAATGAAAATTATGCGCTGGGCTTGCATGCTCCGGGTTTCTTTGATAAAATTCTAAATGTTGACAACTGCTTACTGCAATCTCATCCTGCTAATAAGGTACTTGCAGCTGTCCAAGAATGTTGGAGAGATCCACAACTTGGTTTTTCTCCCTATAATGTTCATTCGCACAAGGGATTTCTTAAGCATTTGATGCTGAGAACGGGAAGGGATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGTTGAAGTTCCTAGTTGATAAAGTTTCCGTATTTCCTGAAGTGGTAAGTGTCATTAATAATGTAAATACTTCTGTTGGCAACACATCTGTTGGGGAGGAAGAATACACTTTGTATGGGAAATCTAGCATTACAGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGGCAGAGGTTTTATACAAGCTTATAGAAGATTGTGCTGGAGTCAAGGGTGACGACTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGTGTTAGGCATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCTCGTCTTAATGCCAAGATAAATGGAATACAAAATGCAACATTTGTCCAGGGAGATCTCAATAAAATTGATGAGAATTTTGGGAAGAATTTTCCTAAACCTGACATTGTCATTTCAGATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGGAAGAAAAGAATATAGAAGGATGTTACAAGCTAATAAGCTTACAGCCAGTTGACATGTTCCCACACACCCCTCATATTGAGTGTGTTTGCCTTCTGGAGCTTCAGTAA

>Glyma.13g352500.2 sequence-type=CDS polypeptide=Glyma.13g352500.2.p locus=Glyma.13g352500 ID=Glyma.13g352500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGAGCATTTCGTATCTAACCAACACTCTGCTGCCACTGCACATCCGAAGGTTTCGGCCTTCTCTATCCACTCTCTCTTGCTCTCTGGCCTCAGATGTGGACCCCACTCCCAATTCCTACTTCCCCAAGCGCGGCCAAACCCTCGAACTGGTGTGCGAGTCCCTTGCCTTCAAAGGGAAGGGCCTCTGCAAGGTCACCCAAACCGGCTTCGTTGTCCTCTGCGACCGCGCCCTTCCTGGCGAACACTTCATCGGCCGCGTCACCCGCAAAAAAGGCAATTACGCTGAGGTAACTAAGGTCAAGACCATAACTCCTCCTCGTGACATTGTCGATGCTCCTTGTGTCTACGCTCCTTATTGCGGCGGCTGCAAGACGCAAAACTTGTCCTACGAGGCTCAGCTCAGAGCCAAGGAGGAGCAGGTACGCGACTTGCTCATTCACGTCGGAAAGTTTTCTCTCCAACATCTCCAACTGCACGCCGTTCTGAAGCCCATTGTTCCTTGTCGTATTCAGTTTCATTACAGGAATAAGATGGAATTCTCGTTTGGTCCCCAAAGATGGTTGCCTAAAGAATCACTGCAAGACAGAATCGTTGATGATGATACTAATGAAAATTATGCGCTGGGCTTGCATGCTCCGGGTTTCTTTGATAAAATTCTAAATGTTGACAACTGCTTACTGCAATCTCATCCTGCTAATAAGGTACTTGCAGCTGTCCAAGAATGTTGGAGAGATCCACAACTTGGTTTTTCTCCCTATAATGTTCATTCGCACAAGGGATTTCTTAAGCATTTGATGCTGAGAACGGGAAGGGATGTAACAACTGATCAGCCTGAAGTTATGGTCAACTTTGTGACCTCTTCCTACAAGCCAGAGCTGTTGAAGTTCCTAGTTGATAAAGTTTCCGTATTTCCTGAAGTGGTAAGTGTCATTAATAATGTAAATACTTCTGTTGGCAACACATCTGTTGGGGAGGAAGAATACACTTTGTATGGGAAATCTAGCATTACAGAGACCTTAAGAGGGCTTACATTCCAAATATCAGCCAACTCTTTCTTTCAAACAAATACTTATCAGGCAGAGGTTTTATACAAGCTTATAGAAGATTGTGCTGGAGTCAAGGGTGACGACTCAGAAATTGTCCTTGACCTGTTTTGTGGAACAGGCACCATAGGTCTGACGCTTGCAAGAAGTGTTAGGCATGTTTATGGCTATGAAGTAGTTCCTCAAGCCATCACAGATGCTCGTCTTAATGCCAAGATAAATGGAATACAAAATGCAACATTTGTCCAGGGAGATCTCAATAAAATTGATGAGAATTTTGGGAAGAATTTTCCTAAACCTGACATTGTCATTTCAGATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGCACGCGACCTTGATTATCTTTGTCATGGTGTGGTTTTGTGCAGGAAGAAAAGAATATAG

Predicted protein sequences of Glyma.13g352500

Limit To All Plant Sequences

>Glyma.13g352500.1.p sequence-type=predicted peptide transcript=Glyma.13g352500.1 locus=Glyma.13g352500 ID=Glyma.13g352500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSISYLTNTLLPLHIRRFRPSLSTLSCSLASDVDPTPNSYFPKRGQTLELVCESLAFKGKGLCKVTQTGFVVLCDRALPGEHFIGRVTRKKGNYAEVTKVKTITPPRDIVDAPCVYAPYCGGCKTQNLSYEAQLRAKEEQVRDLLIHVGKFSLQHLQLHAVLKPIVPCRIQFHYRNKMEFSFGPQRWLPKESLQDRIVDDDTNENYALGLHAPGFFDKILNVDNCLLQSHPANKVLAAVQECWRDPQLGFSPYNVHSHKGFLKHLMLRTGRDVTTDQPEVMVNFVTSSYKPELLKFLVDKVSVFPEVVSVINNVNTSVGNTSVGEEEYTLYGKSSITETLRGLTFQISANSFFQTNTYQAEVLYKLIEDCAGVKGDDSEIVLDLFCGTGTIGLTLARSVRHVYGYEVVPQAITDARLNAKINGIQNATFVQGDLNKIDENFGKNFPKPDIVISDPNRPGMHIKLIKFLLNLRAPRIVYVSCNPATCARDLDYLCHGVEEKNIEGCYKLISLQPVDMFPHTPHIECVCLLELQ*

>Glyma.13g352500.2.p sequence-type=predicted peptide transcript=Glyma.13g352500.2 locus=Glyma.13g352500 ID=Glyma.13g352500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSISYLTNTLLPLHIRRFRPSLSTLSCSLASDVDPTPNSYFPKRGQTLELVCESLAFKGKGLCKVTQTGFVVLCDRALPGEHFIGRVTRKKGNYAEVTKVKTITPPRDIVDAPCVYAPYCGGCKTQNLSYEAQLRAKEEQVRDLLIHVGKFSLQHLQLHAVLKPIVPCRIQFHYRNKMEFSFGPQRWLPKESLQDRIVDDDTNENYALGLHAPGFFDKILNVDNCLLQSHPANKVLAAVQECWRDPQLGFSPYNVHSHKGFLKHLMLRTGRDVTTDQPEVMVNFVTSSYKPELLKFLVDKVSVFPEVVSVINNVNTSVGNTSVGEEEYTLYGKSSITETLRGLTFQISANSFFQTNTYQAEVLYKLIEDCAGVKGDDSEIVLDLFCGTGTIGLTLARSVRHVYGYEVVPQAITDARLNAKINGIQNATFVQGDLNKIDENFGKNFPKPDIVISDPNRPGMHIKLIKFLLNLRAPRIVYVSCNPATCARDLDYLCHGVVLCRKKRI*

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