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Report for Sequence Feature Glyma.13g351300

Feature Type:gene_model
Chromosome:Gm13
Start:44048831
stop:44052482
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g351300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G27970.1AT Exonuclease family protein JGI N/AIEA
GO:0006364GO-bp rRNA processing EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0008408GO-mf 3'-5' exonuclease activity EnsemblGenomesN/AIEA
KOG2249 KOG 3'-5' exonuclease JGI N/AIEA
PTHR12801Panther EXONUCLEASE JGI N/AIEA
PTHR12801:SF3Panther JGI N/AIEA
PF00929PFAM Exonuclease JGI N/AIEA

Expression Patterns of Glyma.13g351300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g351300 not represented in the dataset
Glyma.13g351300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g351300
ParalogEvidenceComments
Glyma.15g023300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g351300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g42740 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g351300
>Glyma.13g351300.2 sequence-type=transcript locus=Glyma.13g351300 ID=Glyma.13g351300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAGTAATAGTTATAATTTTAGAAAAATTAATTTTAAGAGAACAAGATATGCTGAATTGGAGCATTTACCTTAAAAAATTTCTCGGTGGCGTTTTGACTTGAAACAGTCGCTGCTGCGTCTTCTTCTTCTTCATCCGTGGCGTTAGGGTTTTGGTCGGAGTAGCCGTTCCCCATGGACGCCGAAGCTGACCCTCCTCAAAACCCTATCACAAGACACAAATGCTTGGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACTTCGTATCATTCTGTTCATCAGCCAAGATGCGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAGAGGAATTTGTTCAAAGATTTTCTCTCAACAGGGCTGTCAACTTTGTCTGGCACTATTTGATAGTCCCGGGTCTCTCATTGGTCATAGAGAAACATGTCGCTTATCTGCCCCTACTTGTCCAGGAACAAGTGCATTGCCCTATATAGATTCCCAGTTTGATTGTCAAGATTCTTCTGATGAAAACCATGCTGGGGAGGGCCCTGGAGGAGCAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCTAGAGTGTGTTTGGTTGATGAAGATGAGAGATTAATCTTTCATACATATGTACAGCCTGAAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAGCATCTCAAAAACGCCATTCCACTTAAGAAAGTTCGAGAAAAGCTACTGCAAATTCTACAGAATGGGGAATCCATTGGCAAAGTTAGACTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTAGATTGCTTAAAAATGAATTATCCTGATCATATGCTGAGAGACACTGCAAAGTATCGTCCTTTGATGAAAACAAATTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGATTGGCATGATCTAATCGGTTCCTCCTGTATGTACAATTGTACATTGACCATCATTTCAATTTTCTCAGGATCATAATAGACTCTATGAAACATCTGTCCATGATAAAATAAAATGAAATTGTTATGATATCCAATCCGGCACTCATGACCCTTATGAAGATTGTATTTCTGTCATGAGACTATACAAGAGAATACGATCTCAACTTCATCCGGAGGAAGACCATGGAACAATGACTCTGAGTAACAACATTGTTGGCATGCCTGATAGCTGGATATCTAGGGAACTTGACAACCTCACACCAGATGAACTTTATGCCATGTCAAGATCAGATTATAAGTGTTGGTGCTTGGATTTGATACCAAGATTGTCAGCCTGAATTATTGATCTTTGCATTTGTCCATAACATATCATAAGCATATTTCTTCAAGAACCATGGGAATGGAGCATTTGCAATGATATTCTCTGTGCATATCTTTCTATGCATCGAGTTATCTTCCGGACAAGAAAATTATGAGAAAAGATAGGGGTGCTTAATGATGGAGCTTTTGTAAATATTTAGAACGCTTTGTTCAAATCACATGCCCTTGTTTAGAATGAAGACTTACCTACCTTCTCATTATAATATAGGCTCGAACTACCGACAAAAAAACATAAATGGATGCAAGGCTTGTTCTTGATCCAATTTAAACGGAGCCACTTAGATCTAAATTGCTGATTGGTGGTACAAGGAGCTTTCGTTGTCAAAAAAATTGATTTCAAATACAAAATGTGTTAAGTAATTATTTAATTTTCTT

>Glyma.13g351300.3 sequence-type=transcript locus=Glyma.13g351300 ID=Glyma.13g351300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAGTAATAGTTATAATTTTAGAAAAATTAATTTTAAGAGAACAAGATATGCTGAATTGGAGCATTTACCTTAAAAAATTTCTCGGTGGCGTTTTGACTTGAAACAGTCGCTGCTGCGTCTTCTTCTTCTTCATCCGTGGCGTTAGGGTTTTGGTCGGAGTAGCCGTTCCCCATGGACGCCGAAGCTGACCCTCCTCAAAACCCTATCACAAGACACAAATGCTTGGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACTTCGTATCATTCTGTTCATCAGCCAAGATGCGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAGAGGAATTTGTTCAAAGATTTTCTCTCAACAGGGCTGTCAACTTTGTCTGGCACTATTTGATAGTCCCGGGTCTCTCATTGGTCATAGAGAAACATGTCGCTTATCTGCCCCTACTTGTCCAGGAACAAGTGCATTGCCCTATATAGATTCCCAGTTTGATTGTCAAGATTCTTCTGATGAAAACCATGCTGGGGAGGGCCCTGGAGGAGCAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCTAGAGTGTGTTTGGTTGATGAAGATGAGAGATTAATCTTTCATACATATGTACAGCCTGAAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAGCATCTCAAAAACGCCATTCCACTTAAGAAAGTTCGAGAAAAGCTACTGCAAATTCTACAGAATGGGGAATCCATTGGCAAAGTTAGACTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTAGATTGCTTAAAAATGAATTATCCTGATCATATGCTGAGAGACACTGCAAAGTATCGTCCTTTGATGAAAACAAATTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGGATCATAATAGACTCTATGAAACATCTGTCCATGATAAAATAAAATGAAAT
Coding sequences of Glyma.13g351300
>Glyma.13g351300.1 sequence-type=CDS polypeptide=Glyma.13g351300.1.p locus=Glyma.13g351300 ID=Glyma.13g351300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCCGAAGCTGACCCTCCTCAAAACCCTATCACAAGACACAAATGCTTGGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACTTCGTATCATTCTGTTCATCAGCCAAGATGCGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAGAGGAATTTGTTCAAAGATTTTCTCTCAACAGGGCTGTCAACTTTGTCTGGCACTATTTGATAGTCCCGGGTCTCTCATTGGTCATAGAGAAACATGTCGCTTATCTGCCCCTACTTGTCCAGGAACAAGTGCATTGCCCTATATAGATTCCCAGTTTGATTGTCAAGATTCTTCTGATGAAAACCATGCTGGGGAGGGCCCTGGAGGAGCAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCTAGAGTGTGTTTGGTTGATGAAGATGAGAGATTAATCTTTCATACATATGTACAGCCTGAAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAGCATCTCAAAAACGCCATTCCACTTAAGAAAGTTCGAGAAAAGCTACTGCAAATTCTACAGAATGGGGAATCCATTGGCAAAGTTAGACTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTAGATTGCTTAAAAATGAATTATCCTGATCATATGCTGAGAGACACTGCAAAGTATCGTCCTTTGATGAAAACAAATTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGACCCTTATGAAGATTGTATTTCTGTCATGAGACTATACAAGAGAATACGATCTCAACTTCATCCGGAGGAAGACCATGGAACAATGACTCTGAGTAACAACATTGTTGGCATGCCTGATAGCTGGATATCTAGGGAACTTGACAACCTCACACCAGATGAACTTTATGCCATGTCAAGATCAGATTATAAGTGTTGGTGCTTGGATTTGATACCAAGATTGTCAGCCTGA

>Glyma.13g351300.2 sequence-type=CDS polypeptide=Glyma.13g351300.2.p locus=Glyma.13g351300 ID=Glyma.13g351300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCCGAAGCTGACCCTCCTCAAAACCCTATCACAAGACACAAATGCTTGGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACTTCGTATCATTCTGTTCATCAGCCAAGATGCGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAGAGGAATTTGTTCAAAGATTTTCTCTCAACAGGGCTGTCAACTTTGTCTGGCACTATTTGATAGTCCCGGGTCTCTCATTGGTCATAGAGAAACATGTCGCTTATCTGCCCCTACTTGTCCAGGAACAAGTGCATTGCCCTATATAGATTCCCAGTTTGATTGTCAAGATTCTTCTGATGAAAACCATGCTGGGGAGGGCCCTGGAGGAGCAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCTAGAGTGTGTTTGGTTGATGAAGATGAGAGATTAATCTTTCATACATATGTACAGCCTGAAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAGCATCTCAAAAACGCCATTCCACTTAAGAAAGTTCGAGAAAAGCTACTGCAAATTCTACAGAATGGGGAATCCATTGGCAAAGTTAGACTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTAGATTGCTTAAAAATGAATTATCCTGATCATATGCTGAGAGACACTGCAAAGTATCGTCCTTTGATGAAAACAAATTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGATTGGCATGA

>Glyma.13g351300.3 sequence-type=CDS polypeptide=Glyma.13g351300.3.p locus=Glyma.13g351300 ID=Glyma.13g351300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGCCGAAGCTGACCCTCCTCAAAACCCTATCACAAGACACAAATGCTTGGCATGCTATAAGCAATATAAGAAGAAAGAGCATCTTATTGAGCACATGAAAACTTCGTATCATTCTGTTCATCAGCCAAGATGCGGGGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAGAGGAATTTGTTCAAAGATTTTCTCTCAACAGGGCTGTCAACTTTGTCTGGCACTATTTGATAGTCCCGGGTCTCTCATTGGTCATAGAGAAACATGTCGCTTATCTGCCCCTACTTGTCCAGGAACAAGTGCATTGCCCTATATAGATTCCCAGTTTGATTGTCAAGATTCTTCTGATGAAAACCATGCTGGGGAGGGCCCTGGAGGAGCAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCTAGAGTGTGTTTGGTTGATGAAGATGAGAGATTAATCTTTCATACATATGTACAGCCTGAAATACCTGTTACTAATTACAGATATGATATAACTGGATTGACAGAAGAGCATCTCAAAAACGCCATTCCACTTAAGAAAGTTCGAGAAAAGCTACTGCAAATTCTACAGAATGGGGAATCCATTGGCAAAGTTAGACTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTAGATTGCTTAAAAATGAATTATCCTGATCATATGCTGAGAGACACTGCAAAGTATCGTCCTTTGATGAAAACAAATTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGGATCATAATAGACTCTATGAAACATCTGTCCATGATAAAATAA
Predicted protein sequences of Glyma.13g351300
>Glyma.13g351300.1.p sequence-type=predicted peptide transcript=Glyma.13g351300.1 locus=Glyma.13g351300 ID=Glyma.13g351300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQFDCQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYDITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRSQLHPEEDHGTMTLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLDLIPRLSA*

>Glyma.13g351300.2.p sequence-type=predicted peptide transcript=Glyma.13g351300.2 locus=Glyma.13g351300 ID=Glyma.13g351300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQFDCQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYDITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGLA*

>Glyma.13g351300.3.p sequence-type=predicted peptide transcript=Glyma.13g351300.3 locus=Glyma.13g351300 ID=Glyma.13g351300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQFDCQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEIPVTNYRYDITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAHDLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGIIIDSMKHLSMIK*






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