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Report for Sequence Feature Glyma.13g350400

Feature Type:gene_model
Chromosome:Gm13
Start:43986054
stop:43994837
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g350400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72960.1AT Root hair defective 3 GTP-binding protein (RHD3) JGI N/AIEA
GO:0005783GO-cc endoplasmic reticulum EnsemblGenomesN/AIEA
GO:0005789GO-cc endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
KOG2203 KOG GTP-binding protein JGI N/AIEA
PTHR10751Panther GUANYLATE BINDING PROTEIN JGI N/AIEA
PTHR10751:SF2Panther GUANYLATE-BINDING PROTEIN JGI N/AIEA
PF05879PFAM Root hair defective 3 GTP-binding protein (RHD3) JGI N/AIEA

Expression Patterns of Glyma.13g350400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g350400
ParalogEvidenceComments
Glyma.15g024100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g350400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g42650 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g350400
>Glyma.13g350400.1 sequence-type=CDS polypeptide=Glyma.13g350400.1.p locus=Glyma.13g350400 ID=Glyma.13g350400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAATGGCGAACAATGAGAAATGTTGTTCCACTCAACTTATTGATGGAGATGGTGCATTCAATGTTGGCGGGATTGAAAACTTCATGAAAGAGGTTAAATTAAGTGAATGTGGGCTTTCCTATGCCGTAGTTTCTATTATGGGTCCACAAAGTAGTGGCAAGAGCACGCTCTTAAATAGTTTGTTTTGCACTAACTTCACAGAGATGGATGCATTTAAGGGAAGGTCTCAAACAACCAGAGGAATTTGGATGGCTAGATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACTGATGGAAGAGAACGTGGAGAGGATGATACTACATTTGAAAAGCAAAGTGCTTTATTTGCTTTGGCTATCTCTGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGTCGCGAACAAGCTGCAAATAAGCCGCTGTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGCGCGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGATGCTCATAAAGAAACCCCATTAAGTGAATTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGAACAATTTAAGGAGCAGGTTGCCAACTTGAGGCAACGATTCTATCATTCTATCGCTCCAGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCTCAAGAAATCTGGAAAATCATAAAGGAGAACAAGGATCTCGACCTTCCTGCCCACAAGGTAATGGTTGCTACTGTACGATGTGAAGAAATTGCTAACGAGAAATATGACCTTTTTGCTACAAATAAGGATTGGTGTGAGTTGGAAGAGGCTGTGCAATCTGGCCCTATTTCTGGATTTGGCAAAAAGCTCAATTCACTCATTACCACTTGTCTTTCAGAGTATGATGCTGAAGCCAACTATTTTGACGAAGGTGTGAGATCTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTTCAACTTGTCCAACCAACATTCCAAATTGCGCTGGGACATATAAGGTCCGGAATTTTGGATAAGTTCAAGGAAGCATTTGACAAGGCATTGAATGGAGGGGAAGGGTTTTCATCTGCTGCCAATAAGTGCATAGAGTTTTATATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTTATTGAAATAGCAAACTGGGATACATCTAAAGGGAGGGAGAAGCTACAACGTGAAATTGATGCACATGTTGCATCCGTGCGAGCATCTAAGATGTCAGAACTTGTTTCATCATATGAGGAAAAACTAAAGGAGGCCTTGTCTGCACCTGTTGAAACTCTATTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAAACTTCTTAATCGTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGTTGAACTTATCAGATTTGATGTGGATGAACAACAAAAAAAGAGCATGATTGTGAGTTTAGAGGATTATGCTAAGGGTGTGATAGAAGCCAAGGCTAGGGAAGAAGCTGGCAGAGTTCTAATAAGTATGAAGGACAGGTTTATGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAAAAGAAGATGTTCGAGCCATCACCAAGTCTGCCCGCTCTTCCTGCTTGAAGTTGTTGTCTGTAATGGCTGTAATTCGCTTGGATGATGGTGATGACATTTATGACATCGAGAAAACATTAATAGTTGCATTGGCAGATTCATCAAGCAGTTATGCTAAAGATAAGAGCACCATGGCAGTTGAACCACTAGCTTCAAGCACTTGGGATCAGGTACCACCCTCTAAAACATTGATCACACCTGTCCAATGCAAATCCTTGTGGAGGCAATTCAAGATGGAGACAGAATATAGTGTCTCTCAGGCCATTTCTGCACAGGAAGCCAACAATCGTAGCAGGCACTGGTTACCTCCACCATGGGCGATTGTGGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTATTTAGGTGTCATCTTCGTTGGCTATCTTCTCATTAAAGCCCTATGGGCGCAGCTTGACATTACGGGTGAATTTCGCCATGGAGCTCTTCCCGGAATCATCTCCTTGTCTAGCAAGTTTGTTCCAACTATCATGAACCTTATCAGAAAACTAGCAGAGGAGGGACATGGGCGCCATGCAGCTAAGGTTCCCGCTGGTAGAGTTACGTCATCTAGTGCTTCATCTAGTGTAACTTCATCGGGCAATGGAGCCGAGTATACGAGTTCATCAAAATATGAGTAG
Predicted protein sequences of Glyma.13g350400
>Glyma.13g350400.1.p sequence-type=predicted peptide transcript=Glyma.13g350400.1 locus=Glyma.13g350400 ID=Glyma.13g350400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQMANNEKCCSTQLIDGDGAFNVGGIENFMKEVKLSECGLSYAVVSIMGPQSSGKSTLLNSLFCTNFTEMDAFKGRSQTTRGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTTFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPDAHKETPLSEFFIVEVVALSSFEEKEEQFKEQVANLRQRFYHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYDLFATNKDWCELEEAVQSGPISGFGKKLNSLITTCLSEYDAEANYFDEGVRSAKQKQLQEKLFQLVQPTFQIALGHIRSGILDKFKEAFDKALNGGEGFSSAANKCIEFYMAQFDEGCADVVIEIANWDTSKGREKLQREIDAHVASVRASKMSELVSSYEEKLKEALSAPVETLLDGANSDTWPSIRKLLNRETQSAVSGFSVELIRFDVDEQQKKSMIVSLEDYAKGVIEAKAREEAGRVLISMKDRFMTLFSHDSDSMPRIWTGKEDVRAITKSARSSCLKLLSVMAVIRLDDGDDIYDIEKTLIVALADSSSSYAKDKSTMAVEPLASSTWDQVPPSKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANNRSRHWLPPPWAIVALLILGFNEFMTLLRNPLYLGVIFVGYLLIKALWAQLDITGEFRHGALPGIISLSSKFVPTIMNLIRKLAEEGHGRHAAKVPAGRVTSSSASSSVTSSGNGAEYTSSSKYE*






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