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Report for Sequence Feature Glyma.13g346900

Feature Type:gene_model
Chromosome:Gm13
Start:43713445
stop:43722780
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g346900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G14010.1AT CTC-interacting domain 4 JGI N/AIEA
GO:0010603GO-bp regulation of cytoplasmic mRNA processing body assembly EnsemblGenomesN/AIEA
GO:0034063GO-bp stress granule assembly EnsemblGenomesN/AIEA
GO:0010494GO-cc cytoplasmic stress granule EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
KOG2375 KOG Protein interacting with poly(A)-binding protein JGI N/AIEA
PTHR12854Panther ATAXIN 2-RELATED JGI N/AIEA
PF06741PFAM LsmAD domain JGI N/AIEA
PF07145PFAM Ataxin-2 C-terminal region JGI N/AIEA

Expression Patterns of Glyma.13g346900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g346900
ParalogEvidenceComments
Glyma.15g027500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g346900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g42230 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g346900
>Glyma.13g346900.2 sequence-type=transcript locus=Glyma.13g346900 ID=Glyma.13g346900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGAAGCATGTATTTGTAAAAGAAAAAAACGCAGGATAGTCCCAACCACACTAGATAATTTCTTAGTTGGTTTTATTTTGGGTGTTTCTGCTTCGTTGCGGtctcgctctctctctctctcCGGCCACTTCATCCTCCCACCGAAGCAGCCCCTCAACCAATCCCTAACAGACGCAACCTTCTCTCTTCAGCTCCTCTTTTCAACCTCTGCCGGAATCCACCAATTAGGTTCCGATCAACCTCTCACAGGTTAGAGGGGAAGGGGCTGTAAGTGAGGATGAACTTGCAACAAGCTGGGCAGCCTAAATCCTCCAATGGATATGGCCACCGAAAATCTGAAAGAGAAGGGGCAACTAAATCGGAGAATAAGATTCTGTCTGGGAAATTAAATGCCAACAGATTGGCAAATGCAGGTGCAGTTACTGGCAGTAAAGGTGGCAGTTATGAGAGTCCTTCACATGACCGATTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAATTATACCTGCCAAAGACCTTGTTCAAGTTACAGCACAGGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAATCTCATCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGAGGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTGAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTAGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGCCTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGACAGTGGATTTGATGAGGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGATGAAACTTTTGGTGGTGTGTTTGGTTCGGTCGTTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCTTCCTCCATGGATCACACACAATCATGTCAATCAAATACCTGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCGAAGCAGTTAGCATCGGAACTCCCTGCCAAAAGCTACTCCACATCAGATGGGGAAAGCAGGATTCAGGAGAACTTGAATAGTAATCAACATGGAGACAATGCTATTACCAAGGAAGAAAATCCAATTCAAGCTGAGGAGGATGTTCAACTGTCAAGATCTGAGGATTCACAAGGACCACTCTACTCGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGTTCTTATGCCCCTTCATCTCATACTTCATCTAAAACTCATGAGAAGATGGGATCACATGGAGATTTGATCGAGGGTTCAGCATCGGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGAATACCATCTGGGTCAGATTTGGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTTGTTGGCAAGTCAAATCCTTGCTTGAAAAGAATAAACTAAGTGGTTGTCCTGAAAAGTTTTAAACGAGGATATCTGCAGCTGATGGAAAAATCTCTAAAGGCTTATATTATATATTACTGCCAGGTTCGCTAATTCTGGGATATAATTTTATGACCTTGTGTTAACCCATACATCTTTTGGGGTTTCTCAGGCTTTGGCCGTGCGATAGATTAACTCAGATTGACCTTTTCCATCCCTCTCTTTTTAACTCTTTAATGCCATGAAAAATTTACTTTTTATAACTTTGCTCATTCATCCGACACTCTCCAACCATTGGGTTGTTGCCATGTTATATTTTTTACTGGTAAAATTCTTATATCCTTTTAATG
Coding sequences of Glyma.13g346900
>Glyma.13g346900.1 sequence-type=CDS polypeptide=Glyma.13g346900.1.p locus=Glyma.13g346900 ID=Glyma.13g346900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACTTGCAACAAGCTGGGCAGCCTAAATCCTCCAATGGATATGGCCACCGAAAATCTGAAAGAGAAGGGGCAACTAAATCGGAGAATAAGATTCTGTCTGGGAAATTAAATGCCAACAGATTGGCAAATGCAGGTGCAGTTACTGGCAGTAAAGGTGGCAGTTATGAGAGTCCTTCACATGACCGATTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAATTATACCTGCCAAAGACCTTGTTCAAGTTACAGCACAGGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAATCTCATCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGAGGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTGAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTAGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGCCTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGACAGTGGATTTGATGAGGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGATGAAACTTTTGGTGGTGTGTTTGGTTCGGTCGTTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCTTCCTCCATGGATCACACACAATCATGTCAATCAAATACCTGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCGAAGCAGTTAGCATCGGAACTCCCTGCCAAAAGCTACTCCACATCAGATGGGGAAAGCAGGATTCAGGAGAACTTGAATAGTAATCAACATGGAGACAATGCTATTACCAAGGAAGAAAATCCAATTCAAGCTGAGGAGGATGTTCAACTGTCAAGATCTGAGGATTCACAAGGACCACTCTACTCGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGTTCTTATGCCCCTTCATCTCATACTTCATCTAAAACTCATGAGAAGATGGGATCACATGGAGATTTGATCGAGGGTTCAGCATCGGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGAATACCATCTGGGTCAGATTTGGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTGAAATGCAATACAAGGGACGAGATTATTGA

>Glyma.13g346900.2 sequence-type=CDS polypeptide=Glyma.13g346900.2.p locus=Glyma.13g346900 ID=Glyma.13g346900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACTTGCAACAAGCTGGGCAGCCTAAATCCTCCAATGGATATGGCCACCGAAAATCTGAAAGAGAAGGGGCAACTAAATCGGAGAATAAGATTCTGTCTGGGAAATTAAATGCCAACAGATTGGCAAATGCAGGTGCAGTTACTGGCAGTAAAGGTGGCAGTTATGAGAGTCCTTCACATGACCGATTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAATTATACCTGCCAAAGACCTTGTTCAAGTTACAGCACAGGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAATCTCATCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGAGGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTGAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTAGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGCCTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGACAGTGGATTTGATGAGGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGATGAAACTTTTGGTGGTGTGTTTGGTTCGGTCGTTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCTTCCTCCATGGATCACACACAATCATGTCAATCAAATACCTGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCGAAGCAGTTAGCATCGGAACTCCCTGCCAAAAGCTACTCCACATCAGATGGGGAAAGCAGGATTCAGGAGAACTTGAATAGTAATCAACATGGAGACAATGCTATTACCAAGGAAGAAAATCCAATTCAAGCTGAGGAGGATGTTCAACTGTCAAGATCTGAGGATTCACAAGGACCACTCTACTCGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGTTCTTATGCCCCTTCATCTCATACTTCATCTAAAACTCATGAGAAGATGGGATCACATGGAGATTTGATCGAGGGTTCAGCATCGGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGAATACCATCTGGGTCAGATTTGGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTGAAATGCAATACAAGGGACGAGATTATTGA
Predicted protein sequences of Glyma.13g346900
>Glyma.13g346900.1.p sequence-type=predicted peptide transcript=Glyma.13g346900.1 locus=Glyma.13g346900 ID=Glyma.13g346900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNLQQAGQPKSSNGYGHRKSEREGATKSENKILSGKLNANRLANAGAVTGSKGGSYESPSHDRLVYVTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIILKMARLTKDGSLRGQKSGTEFVSKPPLKILIIPAKDLVQVTAQDVAITRDGLANESHHDMHQEIMVDSLISQSRHVDLGRELKPWVPDEEDPQCPELENIFDGHWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGLHLHEAFDIDEETRFSSVYRGKHVDDSGFDEDILFDSHNSETFGDETFGGVFGSVVKRPGEISGGKGNDGARTLANSSSMDHTQSCQSNTCVDLSRSGSYDHAKQLASELPAKSYSTSDGESRIQENLNSNQHGDNAITKEENPIQAEEDVQLSRSEDSQGPLYSKKDGSDKGVLSPNASSYAPSSHTSSKTHEKMGSHGDLIEGSASGKANGETKSVNSRGIPSGSDLVGGIAASSVPGLSPSSSVCSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPTPVSDGSFYFPTNVTTVPSMPGMPVGIGIGPTFAGPQPIIYNPQVAQMPSQGYFHPNAPQYGQLLGHPRQSLYMPSYLPEMQYKGRDY*

>Glyma.13g346900.2.p sequence-type=predicted peptide transcript=Glyma.13g346900.2 locus=Glyma.13g346900 ID=Glyma.13g346900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNLQQAGQPKSSNGYGHRKSEREGATKSENKILSGKLNANRLANAGAVTGSKGGSYESPSHDRLVYVTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIILKMARLTKDGSLRGQKSGTEFVSKPPLKILIIPAKDLVQVTAQDVAITRDGLANESHHDMHQEIMVDSLISQSRHVDLGRELKPWVPDEEDPQCPELENIFDGHWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGLHLHEAFDIDEETRFSSVYRGKHVDDSGFDEDILFDSHNSETFGDETFGGVFGSVVKRPGEISGGKGNDGARTLANSSSMDHTQSCQSNTCVDLSRSGSYDHAKQLASELPAKSYSTSDGESRIQENLNSNQHGDNAITKEENPIQAEEDVQLSRSEDSQGPLYSKKDGSDKGVLSPNASSYAPSSHTSSKTHEKMGSHGDLIEGSASGKANGETKSVNSRGIPSGSDLVGGIAASSVPGLSPSSSVCSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPTPVSDGSFYFPTNVTTVPSMPGMPVGIGIGPTFAGPQPIIYNPQVAQMPSQGYFHPNAPQYGQLLGHPRQSLYMPSYLPEMQYKGRDY*






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