Glyma.13g346900

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Report for Sequence Feature Glyma.13g346900

Feature Type:	gene_model
Chromosome:	Gm13
Start:	43713445
stop:	43722780
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g346900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G14010.1	AT	CTC-interacting domain 4	JGI	N/A	IEA
GO:0010603	GO-bp	regulation of cytoplasmic mRNA processing body assembly	EnsemblGenomes	N/A	IEA
GO:0034063	GO-bp	stress granule assembly	EnsemblGenomes	N/A	IEA
GO:0010494	GO-cc	cytoplasmic stress granule	EnsemblGenomes	N/A	IEA
GO:0003723	GO-mf	RNA binding	EnsemblGenomes	N/A	IEA
KOG2375	KOG	Protein interacting with poly(A)-binding protein	JGI	N/A	IEA
PTHR12854	Panther	ATAXIN 2-RELATED	JGI	N/A	IEA
PF06741	PFAM	LsmAD domain	JGI	N/A	IEA
PF07145	PFAM	Ataxin-2 C-terminal region	JGI	N/A	IEA

Expression Patterns of Glyma.13g346900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g346900 not represented in the dataset	Glyma.13g346900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g346900

Paralog	Evidence	Comments
Glyma.15g027500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g346900 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g42230	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g346900

Limit To All Plant Sequences

>Glyma.13g346900.2 sequence-type=transcript locus=Glyma.13g346900 ID=Glyma.13g346900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGAAGCATGTATTTGTAAAAGAAAAAAACGCAGGATAGTCCCAACCACACTAGATAATTTCTTAGTTGGTTTTATTTTGGGTGTTTCTGCTTCGTTGCGGtctcgctctctctctctctcCGGCCACTTCATCCTCCCACCGAAGCAGCCCCTCAACCAATCCCTAACAGACGCAACCTTCTCTCTTCAGCTCCTCTTTTCAACCTCTGCCGGAATCCACCAATTAGGTTCCGATCAACCTCTCACAGGTTAGAGGGGAAGGGGCTGTAAGTGAGGATGAACTTGCAACAAGCTGGGCAGCCTAAATCCTCCAATGGATATGGCCACCGAAAATCTGAAAGAGAAGGGGCAACTAAATCGGAGAATAAGATTCTGTCTGGGAAATTAAATGCCAACAGATTGGCAAATGCAGGTGCAGTTACTGGCAGTAAAGGTGGCAGTTATGAGAGTCCTTCACATGACCGATTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAATTATACCTGCCAAAGACCTTGTTCAAGTTACAGCACAGGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAATCTCATCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGAGGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTGAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTAGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGCCTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGACAGTGGATTTGATGAGGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGATGAAACTTTTGGTGGTGTGTTTGGTTCGGTCGTTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCTTCCTCCATGGATCACACACAATCATGTCAATCAAATACCTGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCGAAGCAGTTAGCATCGGAACTCCCTGCCAAAAGCTACTCCACATCAGATGGGGAAAGCAGGATTCAGGAGAACTTGAATAGTAATCAACATGGAGACAATGCTATTACCAAGGAAGAAAATCCAATTCAAGCTGAGGAGGATGTTCAACTGTCAAGATCTGAGGATTCACAAGGACCACTCTACTCGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGTTCTTATGCCCCTTCATCTCATACTTCATCTAAAACTCATGAGAAGATGGGATCACATGGAGATTTGATCGAGGGTTCAGCATCGGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGAATACCATCTGGGTCAGATTTGGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTGAAATGCAATACAAGGGACGAGATTATTGACGACTTGGCTATTCGTATTCTTGTTGGCAAGTCAAATCCTTGCTTGAAAAGAATAAACTAAGTGGTTGTCCTGAAAAGTTTTAAACGAGGATATCTGCAGCTGATGGAAAAATCTCTAAAGGCTTATATTATATATTACTGCCAGGTTCGCTAATTCTGGGATATAATTTTATGACCTTGTGTTAACCCATACATCTTTTGGGGTTTCTCAGGCTTTGGCCGTGCGATAGATTAACTCAGATTGACCTTTTCCATCCCTCTCTTTTTAACTCTTTAATGCCATGAAAAATTTACTTTTTATAACTTTGCTCATTCATCCGACACTCTCCAACCATTGGGTTGTTGCCATGTTATATTTTTTACTGGTAAAATTCTTATATCCTTTTAATG

Coding sequences of Glyma.13g346900

Limit To All Plant Sequences

>Glyma.13g346900.1 sequence-type=CDS polypeptide=Glyma.13g346900.1.p locus=Glyma.13g346900 ID=Glyma.13g346900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACTTGCAACAAGCTGGGCAGCCTAAATCCTCCAATGGATATGGCCACCGAAAATCTGAAAGAGAAGGGGCAACTAAATCGGAGAATAAGATTCTGTCTGGGAAATTAAATGCCAACAGATTGGCAAATGCAGGTGCAGTTACTGGCAGTAAAGGTGGCAGTTATGAGAGTCCTTCACATGACCGATTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAATTATACCTGCCAAAGACCTTGTTCAAGTTACAGCACAGGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAATCTCATCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGAGGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTGAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTAGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGCCTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGACAGTGGATTTGATGAGGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGATGAAACTTTTGGTGGTGTGTTTGGTTCGGTCGTTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCTTCCTCCATGGATCACACACAATCATGTCAATCAAATACCTGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCGAAGCAGTTAGCATCGGAACTCCCTGCCAAAAGCTACTCCACATCAGATGGGGAAAGCAGGATTCAGGAGAACTTGAATAGTAATCAACATGGAGACAATGCTATTACCAAGGAAGAAAATCCAATTCAAGCTGAGGAGGATGTTCAACTGTCAAGATCTGAGGATTCACAAGGACCACTCTACTCGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGTTCTTATGCCCCTTCATCTCATACTTCATCTAAAACTCATGAGAAGATGGGATCACATGGAGATTTGATCGAGGGTTCAGCATCGGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGAATACCATCTGGGTCAGATTTGGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTGAAATGCAATACAAGGGACGAGATTATTGA

>Glyma.13g346900.2 sequence-type=CDS polypeptide=Glyma.13g346900.2.p locus=Glyma.13g346900 ID=Glyma.13g346900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAACTTGCAACAAGCTGGGCAGCCTAAATCCTCCAATGGATATGGCCACCGAAAATCTGAAAGAGAAGGGGCAACTAAATCGGAGAATAAGATTCTGTCTGGGAAATTAAATGCCAACAGATTGGCAAATGCAGGTGCAGTTACTGGCAGTAAAGGTGGCAGTTATGAGAGTCCTTCACATGACCGATTAGTATATGTAACAACATGTCTTATTGGGCACCAGGTGGAAGTCCAGGTGAAAAATGGATCCATATACTCTGGAATATTTCATGCAACAAACACAGACAAAGATTTTGGAATCATTTTAAAAATGGCTCGTTTAACTAAGGATGGTTCTTTACGAGGACAGAAATCTGGCACAGAATTTGTCAGCAAGCCCCCTTTGAAGATTTTAATTATACCTGCCAAAGACCTTGTTCAAGTTACAGCACAGGATGTTGCTATTACCAGGGATGGCTTAGCTAATGAATCTCATCATGATATGCATCAGGAAATCATGGTTGATTCATTGATATCTCAATCTCGTCACGTTGATCTAGGGAGAGAATTAAAACCCTGGGTACCTGATGAAGAGGATCCACAATGCCCTGAACTGGAAAACATATTTGACGGCCATTGGAATAGGGGATGGGATCAGTTTGAAACAAATGAGGCATTGTTTGGTGTGAAAAGCACATTCAATGAGGAACTTTATACAACAAAGCTTGAAAAAGGGCCTCAGACAAGAGAATTAGAAAAACAAGCTTTAAGAATAGCAAGAGAAATTGAGGGTGAGGAAACCCAAGATCTTCATCTTGCAGAGGAAAGAGGCCTTCACTTACATGAAGCCTTTGATATTGATGAAGAAACTAGATTCTCTTCAGTCTATAGGGGTAAACATGTTGATGACAGTGGATTTGATGAGGACATACTGTTTGATTCACACAATTCTGAAACTTTTGGTGATGAAACTTTTGGTGGTGTGTTTGGTTCGGTCGTTAAGAGGCCTGGTGAAATAAGTGGTGGAAAAGGAAATGATGGAGCTCGAACATTGGCAAATTCTTCCTCCATGGATCACACACAATCATGTCAATCAAATACCTGTGTGGATTTAAGCCGCTCTGGTTCTTATGATCATGCGAAGCAGTTAGCATCGGAACTCCCTGCCAAAAGCTACTCCACATCAGATGGGGAAAGCAGGATTCAGGAGAACTTGAATAGTAATCAACATGGAGACAATGCTATTACCAAGGAAGAAAATCCAATTCAAGCTGAGGAGGATGTTCAACTGTCAAGATCTGAGGATTCACAAGGACCACTCTACTCGAAGAAGGATGGCTCTGATAAAGGGGTATTATCTCCTAATGCCAGTTCTTATGCCCCTTCATCTCATACTTCATCTAAAACTCATGAGAAGATGGGATCACATGGAGATTTGATCGAGGGTTCAGCATCGGGCAAGGCTAATGGGGAAACGAAATCTGTAAATTCACGTGGAATACCATCTGGGTCAGATTTGGTTGGAGGCATTGCAGCATCTTCTGTTCCTGGTTTATCTCCAAGTTCATCAGTTTGTTCACTGTCTTCTGAAAAATCAACTCTGAATCCCAATGCAAAGGAATTCAAGCTTAACCCTAATGCAAAGAGTTTTATTCCATCGCCTGCTCGGCCTCCCACTCCAGTGTCTGATGGTTCCTTCTATTTTCCAACTAACGTAACTACTGTACCAAGTATGCCAGGCATGCCCGTGGGTATTGGAATTGGACCTACTTTTGCTGGGCCACAACCTATCATATATAATCCTCAGGTAGCACAAATGCCGTCTCAAGGATATTTTCATCCGAATGCACCCCAGTATGGACAGCTTCTTGGTCATCCTAGGCAATCTTTATACATGCCGAGTTACTTGCCTGAAATGCAATACAAGGGACGAGATTATTGA

Predicted protein sequences of Glyma.13g346900

Limit To All Plant Sequences

>Glyma.13g346900.1.p sequence-type=predicted peptide transcript=Glyma.13g346900.1 locus=Glyma.13g346900 ID=Glyma.13g346900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNLQQAGQPKSSNGYGHRKSEREGATKSENKILSGKLNANRLANAGAVTGSKGGSYESPSHDRLVYVTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIILKMARLTKDGSLRGQKSGTEFVSKPPLKILIIPAKDLVQVTAQDVAITRDGLANESHHDMHQEIMVDSLISQSRHVDLGRELKPWVPDEEDPQCPELENIFDGHWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGLHLHEAFDIDEETRFSSVYRGKHVDDSGFDEDILFDSHNSETFGDETFGGVFGSVVKRPGEISGGKGNDGARTLANSSSMDHTQSCQSNTCVDLSRSGSYDHAKQLASELPAKSYSTSDGESRIQENLNSNQHGDNAITKEENPIQAEEDVQLSRSEDSQGPLYSKKDGSDKGVLSPNASSYAPSSHTSSKTHEKMGSHGDLIEGSASGKANGETKSVNSRGIPSGSDLVGGIAASSVPGLSPSSSVCSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPTPVSDGSFYFPTNVTTVPSMPGMPVGIGIGPTFAGPQPIIYNPQVAQMPSQGYFHPNAPQYGQLLGHPRQSLYMPSYLPEMQYKGRDY*

>Glyma.13g346900.2.p sequence-type=predicted peptide transcript=Glyma.13g346900.2 locus=Glyma.13g346900 ID=Glyma.13g346900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNLQQAGQPKSSNGYGHRKSEREGATKSENKILSGKLNANRLANAGAVTGSKGGSYESPSHDRLVYVTTCLIGHQVEVQVKNGSIYSGIFHATNTDKDFGIILKMARLTKDGSLRGQKSGTEFVSKPPLKILIIPAKDLVQVTAQDVAITRDGLANESHHDMHQEIMVDSLISQSRHVDLGRELKPWVPDEEDPQCPELENIFDGHWNRGWDQFETNEALFGVKSTFNEELYTTKLEKGPQTRELEKQALRIAREIEGEETQDLHLAEERGLHLHEAFDIDEETRFSSVYRGKHVDDSGFDEDILFDSHNSETFGDETFGGVFGSVVKRPGEISGGKGNDGARTLANSSSMDHTQSCQSNTCVDLSRSGSYDHAKQLASELPAKSYSTSDGESRIQENLNSNQHGDNAITKEENPIQAEEDVQLSRSEDSQGPLYSKKDGSDKGVLSPNASSYAPSSHTSSKTHEKMGSHGDLIEGSASGKANGETKSVNSRGIPSGSDLVGGIAASSVPGLSPSSSVCSLSSEKSTLNPNAKEFKLNPNAKSFIPSPARPPTPVSDGSFYFPTNVTTVPSMPGMPVGIGIGPTFAGPQPIIYNPQVAQMPSQGYFHPNAPQYGQLLGHPRQSLYMPSYLPEMQYKGRDY*

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