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Report for Sequence Feature Glyma.13g346700

Feature Type:gene_model
Chromosome:Gm13
Start:43705650
stop:43706839
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g346700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54420.1AT homolog of carrot EP3-3 chitinase JGI N/AIEA
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0006032GO-bp chitin catabolic process EnsemblGenomesN/AIEA
GO:0006032GO-bp chitin catabolic process JGI N/AIEA
GO:0016998GO-bp cell wall macromolecule catabolic process EnsemblGenomesN/AIEA
GO:0016998GO-bp cell wall macromolecule catabolic process JGI N/AIEA
GO:0004568GO-mf chitinase activity EnsemblGenomesN/AIEA
GO:0004568GO-mf chitinase activity JGI N/AIEA
GO:0008061GO-mf chitin binding EnsemblGenomesN/AIEA
GO:0008061GO-mf chitin binding JGI N/AIEA
KOG4742 KOG Predicted chitinase JGI N/AIEA
PTHR22595Panther CHITINASE-RELATED JGI N/AIEA
PTHR22595:SF7Panther JGI N/AIEA
PF00182PFAM Chitinase class I JGI N/AIEA
PF00187PFAM Chitin recognition protein JGI N/AIEA
PWY-6902SoyCyc9 chitin degradation II (Vibrio) Plant Metabolic Network ISS
GN7V-64288SoyCyc9-rxn chitinase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g346700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g346700 not represented in the dataset
Glyma.13g346700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g346700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g42210 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g346700
>Glyma.13g346700.1 sequence-type=CDS polypeptide=Glyma.13g346700.1.p locus=Glyma.13g346700 ID=Glyma.13g346700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATAGGAAAGAAATTCTTATGCGTTGTTGTAGCGGTGGCCTTTGTTATGATAACAAAGGTGCCCCAAAATGTGAGTGCTCAAAACTGTGGTTGTGCTGAAGGGTTATGTTGCAGCCAACATGGGTATTGTGGTAACGGTGAGGAGTACTGCGGCACAGGGTGCAAGCAGGGTCCTTGTTATTCGAGCACACCAAGTACTAACAATGTTAATGTGGCTGACATTGTCACACCACAATTCTTCAGTGGCATAATTGATCAGGCTGACTCTGGCTGTGCTGGCAAGAACTTTTACTCACGAGATGCTTTTCTTAATGCTCTCAATTCCTATAATGACTTTGGTAGACTTGGTTCCCAGGATGACTCCAAGCGCGAGATTGCAGCTGCTTTTGCCCATTTCACACATGAAACTGGACATTTTTGCCACATTGAAGAGATTAATGGTGCATCGCAGGACTACTGCGACGAGAATACGATTTCACAGTATCCGTGCCTTTCTAACAGAGGCTACTATGGGCGTGGTCCGATTCAACTAACATGGAACTTCAACTATGGACCTGCTGGACAGAGCAACGATTTTGATGGATTGAACGCTCCTGAAACAGTGGGCAATGATCCTGTGATTTCTTTCAAGACAGCACTGTGGTACTGGATGCAACACGTGCGCCCTGTCATCAACCAAGGCTTTGGTGCAACCATCAGAGCCATTAACGGTCAACTTGAATGTGATGGTGCCAACCCTTCCACAGTTCAGGCTCGCGTTAATTACTACACTGACTACTGTAGACAATTCGGTGTTGCCACCGGTGATAATCTTACTTGCTAA
Predicted protein sequences of Glyma.13g346700
>Glyma.13g346700.1.p sequence-type=predicted peptide transcript=Glyma.13g346700.1 locus=Glyma.13g346700 ID=Glyma.13g346700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIGKKFLCVVVAVAFVMITKVPQNVSAQNCGCAEGLCCSQHGYCGNGEEYCGTGCKQGPCYSSTPSTNNVNVADIVTPQFFSGIIDQADSGCAGKNFYSRDAFLNALNSYNDFGRLGSQDDSKREIAAAFAHFTHETGHFCHIEEINGASQDYCDENTISQYPCLSNRGYYGRGPIQLTWNFNYGPAGQSNDFDGLNAPETVGNDPVISFKTALWYWMQHVRPVINQGFGATIRAINGQLECDGANPSTVQARVNYYTDYCRQFGVATGDNLTC*






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