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Report for Sequence Feature Glyma.13g346500

Feature Type:gene_model
Chromosome:Gm13
Start:43696092
stop:43701365
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g346500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G30710.1AT Ypt/Rab-GAP domain of gyp1p superfamily protein JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0031338GO-bp regulation of vesicle fusion EnsemblGenomesN/AIEA
GO:0090630GO-bp activation of GTPase activity EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular EnsemblGenomesN/AIEA
GO:0012505GO-cc endomembrane system EnsemblGenomesN/AIEA
GO:0005096GO-mf GTPase activator activity EnsemblGenomesN/AIEA
GO:0017137GO-mf Rab GTPase binding EnsemblGenomesN/AIEA
KOG1092 KOG Ypt/Rab-specific GTPase-activating protein GYP1 JGI N/AIEA
PTHR22957Panther TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN JGI N/AIEA
PTHR22957:SF26Panther PROTEIN TBC-3, ISOFORM B JGI N/AIEA
PF00566PFAM Rab-GTPase-TBC domain JGI N/AIEA

Expression Patterns of Glyma.13g346500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g346500
ParalogEvidenceComments
Glyma.15g027700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g346500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g42180 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g346500
>Glyma.13g346500.1 sequence-type=CDS polypeptide=Glyma.13g346500.1.p locus=Glyma.13g346500 ID=Glyma.13g346500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAACGACCACAACAACAACGCCGAACACAACAAAGACACTACCGTTGGAATCCTAGATTCCCGATTCAACCAGACCCTCAGAAATGTTCAAGGGTTACTCAAGGGTCGTAACATTCCTGGTAAAATATTATTAAGCCAGAGGGTTGAATCTCCAGATTACACAAGCTTATCCTCACCAACTTATATAAGGAGCTCCTCATACAGTGAAACTGGCACAAGTGACCAGACATCTGAGACAGTAGAGGAGGAAGTTCACAGTACAAGTAAACCATTTGGTATTCCCAATGAGAATAAGTTGAAAATATCAGCATCCAATGTAGAGAGCTCATCTGAAGAACTCCGGAAATCTTCCATGGGTGCAAGAGCTACAGATTCTGCAAGAGTTATGAAGTTCACTAAGGTGCTTTCAGAGACAATGGTTAAATTAGAGAAATTGCGTGAATTTTCTTGGAGGGGTGTTCCAGATTATATGCGTCCTACAGTGTGGAGACTTCTCTTGGGATATGCACCACCTAATTCAGATAGAAGGGAGGGAGTTTTGAAAAGGAAGCGCCTTGAGTATCTTGACTGTGTTTCTCAGTATTATGATATTCCTGATACAGAACGCTCAGATGATGAGATCAATATGCTTCGCCAGATTGCTGTTGATTGTCCAAGAACTGTGCCTGAAGTTTCATTCTTTCAACAACAGCAAGTTCAGAAATCATTGGAGCGTATTCTGTACACATGGGCAATTCGACATCCTGCAAGTGGATATGTTCAGGGGATAAATGATCTTGTTACGCCATTTTTAGTTGTTTTCCTATCAGAATACTTGGAAGGGGGCATAGATAATTGGTCAATGTCTGATTTATCTTCAGATGAAATCTCTAATGTAGAGGCTGACTGCTATTGGTGCTTGTCAAAGTTGCTTGACAGTATGCAAGACCATTATACATTTGCTCAACCAGGAATTCAAAGGCTTGTTTTTAAGTTGAAGGAATTGGTCAGGAGGATTGACGATCCTGTTTCAAACCATATGGAGGAGCAAGGATTGGAATTTCTTCAATTTGCTTTCCGCTGGTTCAACTGTCTTCTAATCCGCGAGATACCCTTCCATCTTGTCACTCGTCTTTGGGACACATATCTAGCTGAAGGAGATGCCTTACCAGACTTCCTTGTGTATATATCTGCCAGTTTTCTTCTAACGTGGTCTGACAATCTCCAGAAGCTTGATTTCCAAGAGTTGGTAATGTTCCTTCAACACCTTCCAACTAAGAACTGGACTGACCAGGAGCTCGAGATGGTACTTTCTCGTGCATTTATGTGGCACAGCATGTTCAACAACTCTCCGAGTCATTTAGCTAACTGA
Predicted protein sequences of Glyma.13g346500
>Glyma.13g346500.1.p sequence-type=predicted peptide transcript=Glyma.13g346500.1 locus=Glyma.13g346500 ID=Glyma.13g346500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKNDHNNNAEHNKDTTVGILDSRFNQTLRNVQGLLKGRNIPGKILLSQRVESPDYTSLSSPTYIRSSSYSETGTSDQTSETVEEEVHSTSKPFGIPNENKLKISASNVESSSEELRKSSMGARATDSARVMKFTKVLSETMVKLEKLREFSWRGVPDYMRPTVWRLLLGYAPPNSDRREGVLKRKRLEYLDCVSQYYDIPDTERSDDEINMLRQIAVDCPRTVPEVSFFQQQQVQKSLERILYTWAIRHPASGYVQGINDLVTPFLVVFLSEYLEGGIDNWSMSDLSSDEISNVEADCYWCLSKLLDSMQDHYTFAQPGIQRLVFKLKELVRRIDDPVSNHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDALPDFLVYISASFLLTWSDNLQKLDFQELVMFLQHLPTKNWTDQELEMVLSRAFMWHSMFNNSPSHLAN*






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