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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20780.1 | AT | topoisomerase 6 subunit B | JGI | N/A | IEA |
| GO:0000902 | GO-bp | cell morphogenesis | EnsemblGenomes | N/A | IEA |
| GO:0006265 | GO-bp | DNA topological change | EnsemblGenomes | N/A | IEA |
| GO:0006265 | GO-bp | DNA topological change | JGI | N/A | IEA |
| GO:0006412 | GO-bp | translation | EnsemblGenomes | N/A | IEA |
| GO:0007389 | GO-bp | pattern specification process | EnsemblGenomes | N/A | IEA |
| GO:0009741 | GO-bp | response to brassinosteroid | EnsemblGenomes | N/A | IEA |
| GO:0010026 | GO-bp | trichome differentiation | EnsemblGenomes | N/A | IEA |
| GO:0042023 | GO-bp | DNA endoreduplication | EnsemblGenomes | N/A | IEA |
| GO:0042254 | GO-bp | ribosome biogenesis | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005694 | GO-cc | chromosome | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0009330 | GO-cc | DNA topoisomerase complex (ATP-hydrolyzing) | EnsemblGenomes | N/A | IEA |
| GO:0015935 | GO-cc | small ribosomal subunit | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0003676 | GO-mf | nucleic acid binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003735 | GO-mf | structural constituent of ribosome | EnsemblGenomes | N/A | IEA |
| GO:0003916 | GO-mf | DNA topoisomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0003918 | GO-mf | DNA topoisomerase type II (ATP-hydrolyzing) activity | EnsemblGenomes | N/A | IEA |
| GO:0003918 | GO-mf | DNA topoisomerase type II (ATP-hydrolyzing) activity | JGI | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0016853 | GO-mf | isomerase activity | EnsemblGenomes | N/A | IEA |
| GO:0042802 | GO-mf | identical protein binding | EnsemblGenomes | N/A | IEA |
| GO:0042803 | GO-mf | protein homodimerization activity | EnsemblGenomes | N/A | IEA |
| GO:0061505 | GO-mf | DNA topoisomerase II activity | EnsemblGenomes | N/A | IEA |
| PF02518 | PFAM | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | JGI | N/A | IEA |
| PF09239 | PFAM | Topoisomerase VI B subunit, transducer | JGI | N/A | IEA |
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Glyma.13g342900 not represented in the dataset |
Glyma.13g342900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g41790 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g342900.1 sequence-type=CDS polypeptide=Glyma.13g342900.1.p locus=Glyma.13g342900 ID=Glyma.13g342900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGATGGAGATGGTAGCAGTGAAAGCCCAATCGAAACTAAGAAAGCCAAGTCAAAAACCCCTCGAAAACCTAAAGAAACCATTCTGAAGCAAAAATCCCCTGCCGAATTCTTCGCAGAAAATAAGAACATTGCAGGATTTGATAACCCTGGAAAATCTCTTTATACTACTGTTAGAGAGCTTGTGGAGAACTCACTTGACTCGGCGGAGTCCATATCGGAGCTTCCGGTGGTTGAAATTACCATTGAGGAGATAGGGAAAAGCAAATTTAATTCCATGATTGGTCTTGTTGATCGGGAACGTGTTGATGCGGCTTTGTATGATGATTATGAAACTGAGAAGGCTCGTGAGAAACGATTAGCAAAAGAGGCCCGTGCTCAAGAGATGCAAGCAAAGAATGCTGCCCTCGGAAAGAAAGTGAAAGATACTCCAGCTTCAAAGGCTATCAAGGGTCGAGGTGAGGCTTCCTTTTACAGAGTTACATGCAAGGATAATGGAAAAGGAATGCCACATGATGACATCCCAAATATGTTTGGCCGAGTTCTATCTGGGACAAAATATGGCTTGAAACAGACACGTGGAAAGTTTGGTCTTGGTGCAAAGATGGCATTAATATGGTCTAAAATGAGTACTGGGCTTCCTATTGAGATCACTTCATCAATGAAGAACCAAAATTATGTTTCATTTTGCAGGCTGGATATTGACATTCATAAGAATATTCCTCATGTACATTTACATGAAAAACGGGAGAACAAGGAACATTGGCGTGGAGCTGAAATTCAAGTTGTCATAGAGGGGAACTGGACAACTTACCGGTCAAAAATATTGCATTACATGCGACAAATGGCTGTTATCACCCCTTATGCTCAGTTTCTATTTAAATTTGTGTCAGATGCACCTGACAAGAATGTCTCTATAAGATTTGCTCGCAGAACAGATGTAATGCCACCCATTCCTATGGAGACAAAGCATCATCCATCATCGGTTGATTTGCTGCTAATTAAACGACTTATTGCTGAAACTTCGAAGCAGAATCTTTTGCAGTTTCTTCAGCATGAATTTGTAAATATCAGTAAATCTTATGCTGAAAGATTGATAGGAGAAATGGGTCCAGACTTCGGCTCGAAAATGACTGTGAAGTCTCTAACTTCACAGCAATTAGTACGGATTCATCAATTGCTTCGTCAAGCCAAGTTTGATGATCCTAGTGGTCATTGTCTTAGCCCTGCTGGTGAATACAATCTTCGGTTAGGAATTATAAAAGAGCTGCACCCGGACATGGTTGCAACTTATTCAGGCAGTGCTCAAGTTTTTGAAGGTCACCCATTCATTGTGGAAGCTGGAGTCAGTGTAGGTGGAAAAAATGTCAAACAAGGTCTGAATATATTTCGATTTGCCAATAGAATTCCACTACTTTTTGAGCAAGGTGCTGATGTTGTCACCAGAACTGCACATAAAAGAATCAACTGGAGTAGTTACAAAATCAACCAGATGCAAGATAAGATTGGTGTCTTTGTAAGCATTGTGAGCACAAAAATTCCATTCAAAGGAACTGGGAAAGAATACATTGGAGATGACATAACTGAGATTGCTTCTGCTGTCAAGTATGCTATTCAGCAGTGTTGTGTCCAATTAAAATCCAAGATTGTGAAAAAGATGCATGCACGTGAGCAGCAGGAGAGGAAACGAAATCTAAGCAGGTATATTCCTGATGCTTCTGGTGCAGTATACAATGTTTTGAAAGAAATGACACAGTTACATGCATCAAAGAAGATTCGTTATGGGGATGATGATGCTGAACTACTGAGTAAAGTCTCTGAGAATTTGATTACTAAAGAAACACTGTGTGAAAAGCTTTCTAAACATGTTGAACAGGTTGACTATGAAATGGCATTGGAGTATGCCACGCAGAGTGGAGTAAGCGAAGAACCCAGAGAAACAATATACATACAATCATTGGAAGCTGAAAATAAGATGATTGACCTACAGACTCCATTTATTGTTTTCAGAGTCTTTCAGTAG
>Glyma.13g342900.1.p sequence-type=predicted peptide transcript=Glyma.13g342900.1 locus=Glyma.13g342900 ID=Glyma.13g342900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MDGDGSSESPIETKKAKSKTPRKPKETILKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLVDRERVDAALYDDYETEKAREKRLAKEARAQEMQAKNAALGKKVKDTPASKAIKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEITSSMKNQNYVSFCRLDIDIHKNIPHVHLHEKRENKEHWRGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFKFVSDAPDKNVSIRFARRTDVMPPIPMETKHHPSSVDLLLIKRLIAETSKQNLLQFLQHEFVNISKSYAERLIGEMGPDFGSKMTVKSLTSQQLVRIHQLLRQAKFDDPSGHCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGKNVKQGLNIFRFANRIPLLFEQGADVVTRTAHKRINWSSYKINQMQDKIGVFVSIVSTKIPFKGTGKEYIGDDITEIASAVKYAIQQCCVQLKSKIVKKMHAREQQERKRNLSRYIPDASGAVYNVLKEMTQLHASKKIRYGDDDAELLSKVSENLITKETLCEKLSKHVEQVDYEMALEYATQSGVSEEPRETIYIQSLEAENKMIDLQTPFIVFRVFQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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