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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G34890.1 | AT | xanthine dehydrogenase 1 | JGI | N/A | IEA |
| GO:0009115 | GO-bp | xanthine catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0022900 | GO-bp | electron transport chain | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0004854 | GO-mf | xanthine dehydrogenase activity | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | EnsemblGenomes | N/A | IEA |
| GO:0009055 | GO-mf | electron transfer activity | EnsemblGenomes | N/A | IEA |
| GO:0009055 | GO-mf | electron carrier activity | JGI | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | EnsemblGenomes | N/A | IEA |
| GO:0016491 | GO-mf | oxidoreductase activity | JGI | N/A | IEA |
| GO:0016614 | GO-mf | oxidoreductase activity, acting on CH-OH group of donors | EnsemblGenomes | N/A | IEA |
| GO:0016903 | GO-mf | oxidoreductase activity, acting on the aldehyde or oxo group of donors | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | EnsemblGenomes | N/A | IEA |
| GO:0046872 | GO-mf | metal ion binding | JGI | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0051536 | GO-mf | iron-sulfur cluster binding | JGI | N/A | IEA |
| GO:0051537 | GO-mf | 2 iron, 2 sulfur cluster binding | EnsemblGenomes | N/A | IEA |
| GO:0071949 | GO-mf | FAD binding | EnsemblGenomes | N/A | IEA |
| KOG0430 | KOG | Xanthine dehydrogenase | JGI | N/A | IEA |
| PTHR11908 | Panther | XANTHINE DEHYDROGENASE | JGI | N/A | IEA |
| PTHR11908:SF8 | Panther | JGI | N/A | IEA | |
| PF00111 | PFAM | 2Fe-2S iron-sulfur cluster binding domain | JGI | N/A | IEA |
| PF00941 | PFAM | FAD binding domain in molybdopterin dehydrogenase | JGI | N/A | IEA |
| PF01315 | PFAM | Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain | JGI | N/A | IEA |
| PF01799 | PFAM | [2Fe-2S] binding domain | JGI | N/A | IEA |
| PF02738 | PFAM | Molybdopterin-binding domain of aldehyde dehydrogenase | JGI | N/A | IEA |
| PF03450 | PFAM | CO dehydrogenase flavoprotein C-terminal domain | JGI | N/A | IEA |
| P165-PWY | SoyCyc9 | superpathway of purines degradation in plants | Plant Metabolic Network | ISS | |
| PWY-5044 | SoyCyc9 | purine nucleotides degradation I (plants) | Plant Metabolic Network | ISS | |
| PWY-5695 | SoyCyc9 | inosine 5'-phosphate degradation | Plant Metabolic Network | ISS | |
| PWY-6595 | SoyCyc9 | superpathway of guanosine nucleotides degradation (plants) | Plant Metabolic Network | ISS | |
| PWY-6596 | SoyCyc9 | adenosine nucleotides degradation I | Plant Metabolic Network | ISS | |
| PWY-6606 | SoyCyc9 | guanosine nucleotides degradation II | Plant Metabolic Network | ISS | |
| PWY-6607 | SoyCyc9 | guanosine nucleotides degradation I | Plant Metabolic Network | ISS | |
| URSIN-PWY | SoyCyc9 | ureide biosynthesis | Plant Metabolic Network | ISS | |
| GN7V-55842 | SoyCyc9-rxn | xanthine dehydrogenase | Plant Metabolic Network | ISS |
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Glyma.13g340300 not represented in the dataset |
Glyma.13g340300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g034000 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g41520 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g340300.1 sequence-type=CDS polypeptide=Glyma.13g340300.1.p locus=Glyma.13g340300 ID=Glyma.13g340300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGATCGTTGAAGACGGAGGAAGATCTGAAGGTGTCTAATGAGGCTATCTTATATGTTAACGGAGTTCGCAGATTGCTGTCTGATGGATTAGCTCATTTCACTCTTCTCGAGTATCTCAGAGATATAGGTTTGACTGGGACTAAACTAGGCTGTGGGGAAGGTGGTTGTGGAGCATGCACAGTTATGGTTTCTCAATATGATAGAATATTGAAGAAATGCTCACACTATGCTATCAATGCTTGCTTAGCACCTCTATATTCTGTAGAAGGCATGCATGTGATTACAGTGGAGGGATTGGGAAGCTGCAAGCGTGGACTACACCCTGTCCAGGAATCCCTGGCTCGGGCTCATGGTTCACAATGTGGATTTTGTACTCCTGGTTTTGTTATGTCCATGTATGCATTATTACGGTCAAGTCAAACACCACCTAGTGAAGAACAAATTGAAGAATGCCTTGCAGGAAATTTATGTCGGTGCACTGGTTACAGACCAATATTTGATGCATTCCGGGTCTTTGCAAAAACTAGCAATGACTTATATACTGGGGTTTCTTCATTGAGCCTTGAAGAAGGAAAGTCTGTTTGCCCATCAACAGGAAAACCCTGTTCATGTAATTTAAGCAATACAAATGATAAATGCGTAGGTGGTGATAATGGATATGAACCTACTTCCTATAATGAAATAGATGGGACCAAATACACAGAAAGGGAACTTATTTTTCCTCCTGAACTGTTGTTAAGGACACCAACCTCATTAAATTTGACTGGATTTGGTGGGCTAATGTGGTATCGGCCTTTAACACTTCAACATGTATTGGATTTAAAAGCCAAATACACTGATGCAAAGTTGCTAGTTGGTAATACTGAGGTAGGAATTGAGATGAGACTAAAGAGAATGCCGTATCGGGTTCTAATTTCTGTAATGCATGTGCCAGAATTAAATGTTTTGGGTGCAAAGGATGATGGCTTAGAGATAGGTGCTGCAGTAAGACTATCTGATCTTATGAATTTTTTCAAAAAGGTTGTAACTGAGCGAGCTGCTCATGAAACTTTGTCTTGTAAGGCTTTTATTGAGCAACTTAAATGGTTTGCTGGAACACAGATAAGAAATGCTGCATCAGTTGGCGGGAATATATGTACTGCCAGTCCAATATCAGATCTGAATCCTCTATGGATGGCAGCTAGAGCAAAATTTCGAATTATTGATGCTAAAGGAAACATCAGGACAGTCCTGGCCGAAAATTTCTTCCTCCCGGGTTACCGTAAAGTGAATTTAGCAAGTGGTGAAATCTTGCTGTCAGTATTCCTGCCTTGGAATAGGACTTTTGAGTTTGTGAAAGAATTTAAACAGTCTCATAGAAGGGATGATGATATTGCAATTGTAAATGCAGGTATTCGTGTTCATCTTCAGGAACATAGTGAAAACTGTGTGGTTGCTGATGCATCAATATTTTATGGTGGGGTGGCTCCATATTCACTTGCAGCAACAAAAACTAAGGAATTTCTCATAGGAAAGAATTGGAACCAAGATCTGTTGCAAAATGCATTGAAAGTCCTACAAAAGGATATATTACTCAAGGAAGATGCTCCTGGCGGAATGGTAGAGTTCCGGAAATCTTTGACTCTAAGTTTCTTTTTTAAATTTTTTCTGTGGGTGTCTCATCAAATGGATAGCGTCAAAGAGAGTATACCATCATCCCATCTATCTGCTGTGCACTCAGTCCACCGACCACCAGTTACTGGATCTCAGGACTATGAAATCAGGAAACGTGGGACTTCTGTGGGTTCTCCAGAGGTTCATCTATCTGCAAGACTTCAGGTTACAGGAGAAGCAGAATATGCTGATGACACACCAATGCCTCCCAACGGTTTGCATGCTGCCTTAGTTTTGAGTAAGAAACCTCATGCCCGAATAATTAAAATTGATGATTCAGAGGCCATATCTTCGCCTGGATTTGTGAGCTTATTTCTGGCCAAAGATGTACCGAGTGATAATAAAATTGGACCGGTTGTTGCTGATGAGGATCTCTTTGCTGTAGATTATGTCACTTGTGTGGGACAGGTTATAGGAGTAGTTGTGGCCGATACTCATGAAAATGCAAAGATTGCTGCACGAAAAGTTATTGTTGAGTATGAAGAGCTCCCAGCCATCCTTTCAATACGGGATGCCATCAATGCTAGAAGTTTTCATCCCAATACAGAAAAGTGTTTGAGTAAAGGTGATGTTGATCACTGTTTTCAATCAGGTCAGTGTGACCGAATAATTGAAGGGGAAGTTCAGATGGGAGGTCAGGAACACTTTTATCTGGAGCCACATAGCACTTTGATATGGACAGTGGATGGTGGAAATGAAGTTCATATGATATCATCTAGTCAAGCTCCTCAGAAGCACCAGAAATATGTTTCCCATGTTCTTGGCCTTCCCATGTCAAAGGTAGTTTGCAAAACAAAGCGAATTGGTGGTGGATTTGGGGGGAAGGAGACAAGATCAGCCTTTATTGCTGCTGCTGCTTCAGTTCCATCTTATCTGTTAAATCGACCAGTGAAAATCACACTGGACCGAGATGTAGACATGATGATAACTGGGCAACGCCATAGTTTTCTAGGGAAGTACAAGGTTGGATTTACAAATGAAGGGAGGGTGCTTGCGCTGGATCTTGAAATTTATAACAATGCTGGAAACTCACTGGATCTGTCGCTTGCTATCCTTGAACGTGCTATGTTTCATTCAGACAATGTGTATGAAATACCAAATATGAGGGTAATGGGGAGAGCTTGCTTTACTAATTTCCCTAGCCACACTGCTTTCCGTGGATTTGGTGGTCCTCAAGGATTGCTCATTGCTGAAAACTGGATTCAAAGGATTGCTGTGGAACTCAAGATGAGTCCAGAAAAGATAAGGGAAATTAATTTTCAAGGAGAAGGATCCATTCTGCATTATGGCCAGATAGTTCAGTACAGCACACTAGCCCCACTGTGGAATGAACTTAAGTTATCCTGTGACTTTGCAAAGGCACGCAAAGAAGTTGACGAATTCAATAGTCACAACCGCTGGAGGAAGCGTGGCATTGCTATGATTCCTAATAAGTTTGGTATATCCTTTACGACAAAGCTTATGAACCAGGCAGGTGCTCTGGTTCAAGTCTATACAGATGGAACTGTTTTAGTTACCCATGGGGGTGTCGAAATGGGGCAAGGTTTGCATACCAAAGTTGCCCAAATTGCTGCTTCAGCTTTCCATATCCCTCTTAGTTCTGTCTTTATATCAGATACTAGTACTGACAAGGTTCCTAATGCTTCTCCAACAGCAGCTTCTGCAAGTTCTGATATGTATGGAGCAGCGGTTTTGGATGCATGTGAGCAAATAATGGAACGCATGGAACCTATTGCTTCAAAGCATAACTTCAACTCATTTGCTGAGCTAGTTGGTGCATGCTATGCAGAGCGAATAGACCTTTCTGCCCATGGATTTTATATTACACCTGATATTGGTTTTGATTGGACGATAGGCAAAGGAAAACCTTTTAGATATTTCACTTATGGGGCTGCGTTTGCTGAGGTTGAAATTGACACTCTGACTGGAGATTTTCACACCAGAGTGGCAAACATATTTTTGGATCTAGGTTATTCGCTGAATCCAGCGATAGATGTTGGACAGATCGAGGGAGCTTTTATCCAAGGTTTGGGTTGGGTAGCTTTAGAAGAACTTAAATGGGGAGATGAAGCACATAAATGGATCCCGTCTGGGTGCCTTTACACATGTGGACCTGGAGCTTATAAAATTCCTTCTGTGAATGATGTTCCCTTCAAATTTAATGTCTCACTCCTGAAGGGTCATCCAAATGTTAAGGCCATCCATTCATCTAAAGCTGTTGGTGAGCCTCCATTTTTCCTAGCATCTGCTGTGTTGTTTGCCATCAAGGATGCCATCATAGCAGCACGATCTGAAATGGGGCACAATGAGTGGTTTCCACTTGACAGTCCAGCAACTCCTGAGAGAATTCGAATGGCTTGTTTAGATGAATTGTTATCGTCGTTTGTTAACTCAGATTTCCATCCCAAACTTAGTGTTTGA
>Glyma.13g340300.1.p sequence-type=predicted peptide transcript=Glyma.13g340300.1 locus=Glyma.13g340300 ID=Glyma.13g340300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGSLKTEEDLKVSNEAILYVNGVRRLLSDGLAHFTLLEYLRDIGLTGTKLGCGEGGCGACTVMVSQYDRILKKCSHYAINACLAPLYSVEGMHVITVEGLGSCKRGLHPVQESLARAHGSQCGFCTPGFVMSMYALLRSSQTPPSEEQIEECLAGNLCRCTGYRPIFDAFRVFAKTSNDLYTGVSSLSLEEGKSVCPSTGKPCSCNLSNTNDKCVGGDNGYEPTSYNEIDGTKYTERELIFPPELLLRTPTSLNLTGFGGLMWYRPLTLQHVLDLKAKYTDAKLLVGNTEVGIEMRLKRMPYRVLISVMHVPELNVLGAKDDGLEIGAAVRLSDLMNFFKKVVTERAAHETLSCKAFIEQLKWFAGTQIRNAASVGGNICTASPISDLNPLWMAARAKFRIIDAKGNIRTVLAENFFLPGYRKVNLASGEILLSVFLPWNRTFEFVKEFKQSHRRDDDIAIVNAGIRVHLQEHSENCVVADASIFYGGVAPYSLAATKTKEFLIGKNWNQDLLQNALKVLQKDILLKEDAPGGMVEFRKSLTLSFFFKFFLWVSHQMDSVKESIPSSHLSAVHSVHRPPVTGSQDYEIRKRGTSVGSPEVHLSARLQVTGEAEYADDTPMPPNGLHAALVLSKKPHARIIKIDDSEAISSPGFVSLFLAKDVPSDNKIGPVVADEDLFAVDYVTCVGQVIGVVVADTHENAKIAARKVIVEYEELPAILSIRDAINARSFHPNTEKCLSKGDVDHCFQSGQCDRIIEGEVQMGGQEHFYLEPHSTLIWTVDGGNEVHMISSSQAPQKHQKYVSHVLGLPMSKVVCKTKRIGGGFGGKETRSAFIAAAASVPSYLLNRPVKITLDRDVDMMITGQRHSFLGKYKVGFTNEGRVLALDLEIYNNAGNSLDLSLAILERAMFHSDNVYEIPNMRVMGRACFTNFPSHTAFRGFGGPQGLLIAENWIQRIAVELKMSPEKIREINFQGEGSILHYGQIVQYSTLAPLWNELKLSCDFAKARKEVDEFNSHNRWRKRGIAMIPNKFGISFTTKLMNQAGALVQVYTDGTVLVTHGGVEMGQGLHTKVAQIAASAFHIPLSSVFISDTSTDKVPNASPTAASASSDMYGAAVLDACEQIMERMEPIASKHNFNSFAELVGACYAERIDLSAHGFYITPDIGFDWTIGKGKPFRYFTYGAAFAEVEIDTLTGDFHTRVANIFLDLGYSLNPAIDVGQIEGAFIQGLGWVALEELKWGDEAHKWIPSGCLYTCGPGAYKIPSVNDVPFKFNVSLLKGHPNVKAIHSSKAVGEPPFFLASAVLFAIKDAIIAARSEMGHNEWFPLDSPATPERIRMACLDELLSSFVNSDFHPKLSV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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