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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07480.1 | AT | Transcription factor IIA, alpha/beta subunit | JGI | N/A | IEA |
| GO:0006366 | GO-bp | transcription by RNA polymerase II | EnsemblGenomes | N/A | IEA |
| GO:0006367 | GO-bp | transcription initiation from RNA polymerase II promoter | EnsemblGenomes | N/A | IEA |
| GO:0006367 | GO-bp | transcription initiation from RNA polymerase II promoter | JGI | N/A | IEA |
| GO:1903506 | GO-bp | regulation of nucleic acid-templated transcription | EnsemblGenomes | N/A | IEA |
| GO:1903508 | GO-bp | positive regulation of nucleic acid-templated transcription | EnsemblGenomes | N/A | IEA |
| GO:0005672 | GO-cc | transcription factor TFIIA complex | EnsemblGenomes | N/A | IEA |
| GO:0005672 | GO-cc | transcription factor TFIIA complex | JGI | N/A | IEA |
| GO:0003713 | GO-mf | transcription coactivator activity | EnsemblGenomes | N/A | IEA |
| KOG2652 | KOG | RNA polymerase II transcription initiation factor TFIIA, large chain | JGI | N/A | IEA |
| PTHR12694 | Panther | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 | JGI | N/A | IEA |
| PTHR12694:SF2 | Panther | JGI | N/A | IEA | |
| PF03153 | PFAM | Transcription factor IIA, alpha/beta subunit | JGI | N/A | IEA |
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Glyma.13g339000 not represented in the dataset |
Glyma.13g339000 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.15g035300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g41390 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g339000.2 sequence-type=transcript locus=Glyma.13g339000 ID=Glyma.13g339000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 CGTGCGGCTGTGTTTAAAATCGGATGCAAACCTATTTATATTCctctctttattctctctttctcgtccgtctcttctctctctTCGCCGTTGGTTTCACTCAGCTCTCACTCTCATCCCCATCCCAAACCCTAGCCTCGCTATTTTTCATGATTCCTCTCGATCTCTTCCACTGAACTCTCTCTCAAATCGGTCGTATACGGAGAATTATCGGAGACACTCGGAGGTCTGCTAAAATTAACATTCGCGATGGCGGCTTCCACTACCAGCCAGGTCTACATCGATGTAATCGAGGATGTCATGGTCAAGGTCCGTGACGAGTTCGTGAACAACGGTGGTCCTGGAGAGGAAGTTCTCAAGGAGCTTCAAGCTATGTGGGAATCGAAGATGATGCAAGCTGGTGCTGTGCTCGGTCCCATAGAAAGGTCCACTGCAGCTAAGCCAACTCCTGGTGGTCCAATTACTCCGGTTCATGATCTCAACGTACCGTATGAGGGGACCGATGAGTATGAGACTCCTACAGCGGATATGCTTTTCCCCCCTACACCATTGCAAACTCCAATTCAAACCCCTCTACCAGGAACTGGGGATAACTCAACGTATAACATTCCTACTGGACCAAGTGACTACCCCTCTTCTGGAAATGACACAGGAGGAAATGCTGATGGAAAAGGAGCAAGACCTGCTCCATATATGCAATCTCCTTCTCCTTGGATGAACCAAAGGCCTCCACTTGATGTCAATGTTGCTTATGTGGAAGGGCGGGATGAGGCAGACAGGGGAACTTCTAATCAACCTCCGACACAGGACTTCTTCACGATGCCATCAGGAAAGCGAAAACGCAATGATTTAACTTCTCAATATAATGCTGGTGGATATATACCTCAGCAAGATGGAGCTGGGGATGCTACACATGGAGATTTTGAAATTGAGGTAAGTGGAAGGGGCATCTCTATTAATTCACATCACACTATTTCCAAAGGAAAAATGTCAGCAGATTTGGAGAGGTCGACTTCTAGGATTCCTCAACTTGATGGACCAATTCCATATGATGATGATGATGTGCTCTCTACTCCAAATATATACAACTATGGAGAAGTGTTCAGTGAAGACTACAACATTTCTAATACACCAGCTCCTCCTGAAGTACCAGCAAGCACCCCTGCTCTCTTGGTTCAGAATGAAGTGGGTAatgattttgatgatgatgatgatgatgaacctccattaaatgaagaggatgatgatgatttagatgaCATGGAACAAGGAGAGGATCAAAATACACATCATCTTGTTTTGGCCCAGTTTGATAAGGTGACACGTACCAAGAGCAGGTGGAAATGCACATTAAAGGATGGCATCATGCACATAAATAATAAGGACATTCTCTTCAATAAGGCGACAGGAGAGTTTGAATTCTGATTTTGTTGGGGCTGGCGCTTTCGTGAAATATGATTCGGAGGTGTCATTGTGTGTTTCATGATCCCTTTCTTTGATTATAATTATTAAGTGAAAGATTGATGAAGATAGGAATATTTTTACCCTTTCGAGACTATTGTGATGTTGGCCTCTTGTACATAGAGAATGAGCAATTTTTTGCCTTTAACTGATGGTTAGAGACTCGGGCATTTCCTTTAAGCCCACCATTTGTCAAGTATGTGGTTTCTTTAGTTCTGTATACTTGAACATTTTAGTGAATTTAAGAATCCCTTGTATGATAATAATGATAGATAGGCTTGTTAGGCCTCGCGTAACTTTTTGACATTAAAAAACAGGATGATGTTTTTTTTTTCTTATTAAATTAAAAGAAACAGTTTGAT
>Glyma.13g339000.1 sequence-type=CDS polypeptide=Glyma.13g339000.1.p locus=Glyma.13g339000 ID=Glyma.13g339000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCTTCCACTACCAGCCAGGTCTACATCGATGTAATCGAGGATGTCATGGTCAAGGTCCGTGACGAGTTCGTGAACAACGGTGGTCCTGGAGAGGAAGTTCTCAAGGAGCTTCAAGCTATGTGGGAATCGAAGATGATGCAAGCTGGTGCTGTGCTCGGTCCCATAGAAAGGTCCACTGCAGCTAAGCCAACTCCTGGTGGTCCAATTACTCCGGTTCATGATCTCAACGTACCGTATGAGGGGACCGATGAGTATGAGACTCCTACAGCGGATATGCTTTTCCCCCCTACACCATTGCAAACTCCAATTCAAACCCCTCTACCAGGAACTGGGGATAACTCAACGTATAACATTCCTACTGGACCAAGTGACTACCCCTCTTCTGGAAATGACACAGGAGGAAATGCTGATGGAAAAGGAGCAAGACCTGCTCCATATATGCAATCTCCTTCTCCTTGGATGAACCAAAGGCCTCCACTTGATGTCAATGTTGCTTATGTGGAAGGGCGGGATGAGGCAGACAGGGGAACTTCTAATCAACCTCCGACACAGGACTTCTTCACGATGCCATCAGGAAAGCGAAAACGCAATGATTTAACTTCTCAATATAATGCTGGTGGATATATACCTCAGCAAGATGGAGCTGGGGATGCTACACATGGAGATTTTGAAATTGAGGTACCCCCTATTAGTCAGCATCATATATATCACCAGGATGTCTGCATATCTTTTGTAAGTGGAAGGGGCATCTCTATTAATTCACATCACACTATTTCCAAAGGAAAAATGTCAGCAGATTTGGAGAGGTCGACTTCTAGGATTCCTCAACTTGATGGACCAATTCCATATGATGATGATGATGTGCTCTCTACTCCAAATATATACAACTATGGAGAAGTGTTCAGTGAAGACTACAACATTTCTAATACACCAGCTCCTCCTGAAGTACCAGCAAGCACCCCTGCTCTCTTGGTTCAGAATGAAGTGGGTAATGATTTTGATGATGATGATGATGATGAACCTCCATTAAATGAAGAGGATGATGATGATTTAGATGACATGGAACAAGGAGAGGATCAAAATACACATCATCTTGTTTTGGCCCAGTTTGATAAGGTGACACGTACCAAGAGCAGGTGGAAATGCACATTAAAGGATGGCATCATGCACATAAATAATAAGGACATTCTCTTCAATAAGGCGACAGGAGAGTTTGAATTCTGA >Glyma.13g339000.2 sequence-type=CDS polypeptide=Glyma.13g339000.2.p locus=Glyma.13g339000 ID=Glyma.13g339000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGGCTTCCACTACCAGCCAGGTCTACATCGATGTAATCGAGGATGTCATGGTCAAGGTCCGTGACGAGTTCGTGAACAACGGTGGTCCTGGAGAGGAAGTTCTCAAGGAGCTTCAAGCTATGTGGGAATCGAAGATGATGCAAGCTGGTGCTGTGCTCGGTCCCATAGAAAGGTCCACTGCAGCTAAGCCAACTCCTGGTGGTCCAATTACTCCGGTTCATGATCTCAACGTACCGTATGAGGGGACCGATGAGTATGAGACTCCTACAGCGGATATGCTTTTCCCCCCTACACCATTGCAAACTCCAATTCAAACCCCTCTACCAGGAACTGGGGATAACTCAACGTATAACATTCCTACTGGACCAAGTGACTACCCCTCTTCTGGAAATGACACAGGAGGAAATGCTGATGGAAAAGGAGCAAGACCTGCTCCATATATGCAATCTCCTTCTCCTTGGATGAACCAAAGGCCTCCACTTGATGTCAATGTTGCTTATGTGGAAGGGCGGGATGAGGCAGACAGGGGAACTTCTAATCAACCTCCGACACAGGACTTCTTCACGATGCCATCAGGAAAGCGAAAACGCAATGATTTAACTTCTCAATATAATGCTGGTGGATATATACCTCAGCAAGATGGAGCTGGGGATGCTACACATGGAGATTTTGAAATTGAGGTAAGTGGAAGGGGCATCTCTATTAATTCACATCACACTATTTCCAAAGGAAAAATGTCAGCAGATTTGGAGAGGTCGACTTCTAGGATTCCTCAACTTGATGGACCAATTCCATATGATGATGATGATGTGCTCTCTACTCCAAATATATACAACTATGGAGAAGTGTTCAGTGAAGACTACAACATTTCTAATACACCAGCTCCTCCTGAAGTACCAGCAAGCACCCCTGCTCTCTTGGTTCAGAATGAAGTGGGTAATGATTTTGATGATGATGATGATGATGAACCTCCATTAAATGAAGAGGATGATGATGATTTAGATGACATGGAACAAGGAGAGGATCAAAATACACATCATCTTGTTTTGGCCCAGTTTGATAAGGTGACACGTACCAAGAGCAGGTGGAAATGCACATTAAAGGATGGCATCATGCACATAAATAATAAGGACATTCTCTTCAATAAGGCGACAGGAGAGTTTGAATTCTGA
>Glyma.13g339000.1.p sequence-type=predicted peptide transcript=Glyma.13g339000.1 locus=Glyma.13g339000 ID=Glyma.13g339000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERSTAAKPTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKGARPAPYMQSPSPWMNQRPPLDVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGYIPQQDGAGDATHGDFEIEVPPISQHHIYHQDVCISFVSGRGISINSHHTISKGKMSADLERSTSRIPQLDGPIPYDDDDVLSTPNIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDDDDLDDMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF* >Glyma.13g339000.2.p sequence-type=predicted peptide transcript=Glyma.13g339000.2 locus=Glyma.13g339000 ID=Glyma.13g339000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERSTAAKPTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKGARPAPYMQSPSPWMNQRPPLDVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGYIPQQDGAGDATHGDFEIEVSGRGISINSHHTISKGKMSADLERSTSRIPQLDGPIPYDDDDVLSTPNIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDDDDLDDMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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