Report for Sequence Feature Glyma.13g333700
Feature Type: gene_model
Chromosome: Gm13
Start: 42766642
stop: 42769382
Source: JGI
Version: Wm82.a2.v1
High confidence: yes
A previous version of this gene model can be found here:
Annotations for Glyma.13g333700
Expression Patterns of Glyma.13g333700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Related Legume Genes
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS .
Gene information in GlycineMine developed by LIS .
Related Plant Genes
Gene families from PhyloGenes .
Paralogs of Glyma.13g333700
Paralog Evidence Comments
Glyma.15g040500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.
Gene model name correspondences to Glyma.13g333700 Gene Call Version Wm82.a2.v1
Corresponding Name Annotation Version Evidence Comments
Glyma13g40880 Wm82.a1.v1.1 IGC As supplied by JGI
Transcripts of Glyma.13g333700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.13g333700.2 sequence-type=transcript locus=Glyma.13g333700 ID=Glyma.13g333700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATCCTAAGTTACTAGATTATTTAAATCATTGCCTACTACAGAATATTTGAAAATTGAGATCATTGGCTTGAATAAATAAAAAATATATTTGATTGGAAACAAATTTACATATTTGGAGTTTCGAGAATCCCTTGACGAAGAAGTAGCAGCAGGGTAAACATTAAAATCAATCGGAAAGTGGAGATGTCACAGAGAATCGGGACAAAGCTCTTCGTCCACAGATTATCCTTTTACACTACACAGGAGCAGCTCAAGAAGTTGTTCTCTCCATTCGGACTAGTTACCCAAGCTGATCTAGCGTTGGATCCTATAACCAAAAGGCCCAAAGGTTTCGGCTTTGTCTCCTTCAAATCTGAAATTGAAGCGGAAAAGGCTTGCAAGGCCATGAATGGCAGGGACTTCCATTGAGTATCCTTGTTCGATGGAAAGTTGATTAATGGCTACTTTGGAAGCTGCTTGAAACATGAGGAAAACATGTAACATTGTCCTCAACTTAATAATCTGCCTCAATTGGTGGTAGAGTGAAGCCATAAAGATGGAAAATGGATGTACTTATATTTTCCTTTTAGAGAATAAATATAATGTATTTCAACCCGTGCTAAATTTATTGGGTTTACCGGTTTAGGCATGTGTACCCACTACCCATGCAGAAAATTATAATCCAAATGTGGTGTATATTCACTGCATATCAATGTTTTTCTGATAAACAATCAGACCAttattttattttattttttatttatcttGAGAGATAGCTCTATAATTATAATGCTCGTTGTGAGTTTCTCATGAAACACC
Coding sequences of Glyma.13g333700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma.13g333700.1 sequence-type=CDS polypeptide=Glyma.13g333700.1.p locus=Glyma.13g333700 ID=Glyma.13g333700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACAGAGAATCGGGACAAAGCTCTTCGTCCACAGATTATCCTTTTACACTACACAGGAGCAGCTCAAGAAGTTGTTCTCTCCATTCGGACTAGTTACCCAAGCTGATCTAGCGTTGGATCCTATAACCAAAAGGCCCAAAGGTTTCGGCTTTGTCTCCTTCAAATCTGAAATTGAAGCGGAAAAGGCTTGCAAGGCCATGAATGGCAGGATTGTTAATGGAAGGCTGATTTTGGTTGAACCTGCAAACGAAAAATGA
>Glyma.13g333700.2 sequence-type=CDS polypeptide=Glyma.13g333700.2.p locus=Glyma.13g333700 ID=Glyma.13g333700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCACAGAGAATCGGGACAAAGCTCTTCGTCCACAGATTATCCTTTTACACTACACAGGAGCAGCTCAAGAAGTTGTTCTCTCCATTCGGACTAGTTACCCAAGCTGATCTAGCGTTGGATCCTATAACCAAAAGGCCCAAAGGTTTCGGCTTTGTCTCCTTCAAATCTGAAATTGAAGCGGAAAAGGCTTGCAAGGCCATGAATGGCAGGGACTTCCATTGA
Predicted protein sequences of Glyma.13g333700
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma.13g333700.1.p sequence-type=predicted peptide transcript=Glyma.13g333700.1 locus=Glyma.13g333700 ID=Glyma.13g333700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSQRIGTKLFVHRLSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRIVNGRLILVEPANEK*
>Glyma.13g333700.2.p sequence-type=predicted peptide transcript=Glyma.13g333700.2 locus=Glyma.13g333700 ID=Glyma.13g333700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSQRIGTKLFVHRLSFYTTQEQLKKLFSPFGLVTQADLALDPITKRPKGFGFVSFKSEIEAEKACKAMNGRDFH*