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Report for Sequence Feature Glyma.13g333500

Feature Type:gene_model
Chromosome:Gm13
Start:42756166
stop:42759962
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g333500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G46060.1AT RAB GTPase homolog 8A JGI N/AIEA
AT5G59840.1AT Ras-related small GTP-binding family protein JGI N/AIEA
GO:0006904GO-bp vesicle docking involved in exocytosis EnsemblGenomesN/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction JGI N/AIEA
GO:0009306GO-bp protein secretion EnsemblGenomesN/AIEA
GO:0017157GO-bp regulation of exocytosis EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG0078 KOG GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins JGI N/AIEA
PTHR24073Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24073:SF232Panther JGI N/AIEA
PF00071PFAM Ras family JGI N/AIEA

Expression Patterns of Glyma.13g333500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g333500 not represented in the dataset
Glyma.13g333500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g333500
ParalogEvidenceComments
Glyma.15g040600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g333500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g40870 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g333500
>Glyma.13g333500.2 sequence-type=transcript locus=Glyma.13g333500 ID=Glyma.13g333500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCATTTAACAAACTACAAACTACAAACTAGGCGCTTATGGAGAATGTTTGGTAGCTACAATATATAAAAATGAAAATTTTACAATGAATGAATATGAATATGGAAACAGCCTTACAACAAATTGGGTGCCTCTATAGTCGGGGAAGGCTCCCAAGTTGAAGGTTGTATCCTACTCCTACTGTTCTGGTCAATCAAAAATTCCCGAGATTTTTAACTTTATTATTATTATTTTAAAATTACAAAAATATAAAATAAAAACAGCAAAATTAGACATCGCTCTTCTCTCTCTCTAAAAATCTCCGGCGGTCCTTCAGTCCATTTTCCTTTCCATTTCGGATCTGATAGGAATAGATTTCGTCAGTGTTGAAATCACGAGAAATTCATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCTATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAACAACCAACTAGATCATGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGTTGTGGGTGAGGAGGCAACATTATTATCCAAGAACAAGAAGGAGGAAAATACATGCATGATGATAAATTGATGATGATTCGTGCTTTGGATTTTACGCGGTCATTCTTTAATAGTTTCTTTCCTAGATTAAGTTATATATTAATTCAAAGTTAGATATGATTGTGTCATTGCCCCTTGTGTTGTTTGTTTGGGCAACAAATCTATTGATCGTTGATATTTTGAATGGTTAATTGCATTGATATTCTTTAAAACGTAATAAAATTATATTGACCCTATTCTTAGTTAAAA

>Glyma.13g333500.3 sequence-type=transcript locus=Glyma.13g333500 ID=Glyma.13g333500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTCATTTAACAAACTACAAACTACAAACTAGGCGCTTATGGAGAATGTTTGGTAGCTACAATATATAAAAATGAAAATTTTACAATGAATGAATATGAATATGGAAACAGCCTTACAACAAATTGGGTGCCTCTATAGTCGGGGAAGGCTCCCAAGTTGAAGGTTGTATCCTACTCCTACTGTTCTGGTCAATCAAAAATTCCCGAGATTTTTAACTTTATTATTATTATTTTAAAATTACAAAAATATAAAATAAAAACAGCAAAATTAGACATCGCTCTTCTCTCTCTCTAAAAATCTCCGGCGGTCCTTCAGTCCATTTTCCTTTCCATTTCGGATCTGATAGGAATAGATTTCGTCAGTGTTGAAATCACGAGAAATTCATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAGTAAGTGATGCTTGCATGAAAATGTGGAAACTTCCTTAACTCCTTAATTTTTGTTATTTTTGCCTACTTGAAAATTT
Coding sequences of Glyma.13g333500
>Glyma.13g333500.1 sequence-type=CDS polypeptide=Glyma.13g333500.1.p locus=Glyma.13g333500 ID=Glyma.13g333500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCTATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAACAACCAACTAGATCATGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGTTGTGGGTGA

>Glyma.13g333500.2 sequence-type=CDS polypeptide=Glyma.13g333500.2.p locus=Glyma.13g333500 ID=Glyma.13g333500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGTGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCTATTGCAAGAGATATAAAACAAAGGCTTGCTGACACTGACTCTAAGGCAGAGCCAGCAGGAATTAAAATCAACAACCAACTAGATCATGCAACGGCTGGGGAAGTTGCACAAAAGTCAGCTTGTTGTGGGTGA

>Glyma.13g333500.3 sequence-type=CDS polypeptide=Glyma.13g333500.3.p locus=Glyma.13g333500 ID=Glyma.13g333500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTCCACCGGCAAGAGCTCGTGCGGATTACGATTATCTCATAAAACTTCTCTTGATTGGCGATAGTGGTGTCGGAAAGAGTTGCCTTCTTCTACGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACTATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACCGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTTACAGACGAATCTTCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAGCATGCTTCAGACAATGTTAACAAAGTACTGGTGGGGAACAAAGCTGACATGGATGAAAGCAAACGGGTTGTGCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAGTAAGTGATGCTTGCATGAAAATGTGGAAACTTCCTTAA
Predicted protein sequences of Glyma.13g333500
>Glyma.13g333500.1.p sequence-type=predicted peptide transcript=Glyma.13g333500.1 locus=Glyma.13g333500 ID=Glyma.13g333500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPAGIKINNQLDHATAGEVAQKSACCG*

>Glyma.13g333500.2.p sequence-type=predicted peptide transcript=Glyma.13g333500.2 locus=Glyma.13g333500 ID=Glyma.13g333500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKAEPAGIKINNQLDHATAGEVAQKSACCG*

>Glyma.13g333500.3.p sequence-type=predicted peptide transcript=Glyma.13g333500.3 locus=Glyma.13g333500 ID=Glyma.13g333500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKVLVGNKADMDESKRVVPTSKGQALADEYGIKFFETVSDACMKMWKLP*






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