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Report for Sequence Feature Glyma.13g332600

Feature Type:gene_model
Chromosome:Gm13
Start:42684855
stop:42687548
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g332600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G59750.1AT DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II JGI N/AIEA
GO:0009231GO-bp riboflavin biosynthetic process EnsemblGenomesN/AIEA
GO:0009231GO-bp riboflavin biosynthetic process JGI N/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003935GO-mf GTP cyclohydrolase II activity EnsemblGenomesN/AIEA
GO:0003935GO-mf GTP cyclohydrolase II activity JGI N/AIEA
GO:0008686GO-mf 3,4-dihydroxy-2-butanone-4-phosphate synthase activity EnsemblGenomesN/AIEA
GO:0008686GO-mf 3,4-dihydroxy-2-butanone-4-phosphate synthase activity JGI N/AIEA
PTHR21327Panther GTP CYCLOHYDROLASE II-RELATED JGI N/AIEA
PF00925PFAM GTP cyclohydrolase II JGI N/AIEA
PF00926PFAM 3,4-dihydroxy-2-butanone 4-phosphate synthase JGI N/AIEA
RIBOSYN2-PWYSoyCyc9 flavin biosynthesis I (bacteria and plants) Plant Metabolic Network ISS
GN7V-59525SoyCyc9-rxn GTP cyclohydrolase II Plant Metabolic Network ISS

Expression Patterns of Glyma.13g332600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g332600 not represented in the dataset
Glyma.13g332600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g332600
ParalogEvidenceComments
Glyma.15g041600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g332600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g40771 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g332600
>Glyma.13g332600.1 sequence-type=CDS polypeptide=Glyma.13g332600.1.p locus=Glyma.13g332600 ID=Glyma.13g332600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACACTTCATTCCCTCATCCTTTGATTTCCCACGTCATCACTAGCTCAAGCTTGCATCGCTCCTACGGTATTCATCACAGTGCAAGACTAGGCCTTTGGAAGAACAAAGTGTGGAACTCAGCTTGTTGTGCTGTTGGGTTTTCTGGGGTTGGAATAGAAGACGTGTTTGACGATAGTAATTTGAAGATAAATGAAAATGGATCCCTCTTAGGTGCCTTAAATAATAATAACGAGTCTTCTTCAGCTTCATTTGAAACGTTAGACTCTGAAATAACACCAGAAACCACTAATTTCTTTGTCAGTGATGCCGAAGGTGATCCAGATTGCCCCTCTAAAGGCTATTCTTCCATCGAACAGGCGCTTAATGCATTAAGCCAAGGCAAGTTTGTGATTGTGGTTGATGATGAAAACGGGGATGTTGAAGGAAATCTTATAATGGCAGCATCTCTTACTAGTCCAAAGGACATCGCTTTTATGATTAAGCACGGATCAGGGATCGTTTCTGTTGGCATGAAAGACGAGGATCTTCAAAGACTGAACCTCCCTCTTATGTCACCAGAGACTGAAGATGAGGATTCTTCTGCTCCCACCTTCAGTGGATTTAGTTGCATTGGCTGGCTTGCCCCCAAGTTAGCATCGGAACACACCTTACCAATTGGCTCAATAACTGATTTGATAAGGTATCGGAGAAAGAGAGAAAAATTAGTTGAAAGAACTTCAGTGTCTCGCCTGCCTACAAAATGGGGTGTATTTCAAGCATATTGCTACAGCTCAAAGTTGGATGGAACTGAACATGTGGCTGCTGTAAAGGGAGACATAGGAGATGGACAAGATGTGCTAGTACGAGTCCATTCAGAATGTTTAACTGGGGATATAGTTGGATCAGCTCGGTGTGACTGTGGCAACCAGTTAGATTTGGCAATGCGGTTAATAGAAGAAGCAGGTAGAGGAGTAGTTGTGTATCTTCGAGGTCATGAAGGAAGAGGCATTGAACTTGGTCACAAACTTAAAGCATATAATTTGCAGGATCAAGGTCATGACACGGTCCAAGCAAACATAGAACTCGGCTTAGCTGTTGATGCTCGTGAATATGGGATTGGTGCACAGATTTTGAGGGACATAGGAGTTCGAACAATGTGGCTTATGACTAACAACCCAGCAAAGTTTGTTGGTCTTAAAGGATATGGTTTGGCTGTGTTGACACCAATCACAGAGGAAAACAAGAGATACTTGGAAACAAAAAGGACCAAAATGGGTCATATTTATGGCTCTGATTTACAAGGATCATTACCTGGATTCAACGATTCTATTGTAAATAACGGAGACTCACCGGTGAACACATAG
Predicted protein sequences of Glyma.13g332600
>Glyma.13g332600.1.p sequence-type=predicted peptide transcript=Glyma.13g332600.1 locus=Glyma.13g332600 ID=Glyma.13g332600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDTSFPHPLISHVITSSSLHRSYGIHHSARLGLWKNKVWNSACCAVGFSGVGIEDVFDDSNLKINENGSLLGALNNNNESSSASFETLDSEITPETTNFFVSDAEGDPDCPSKGYSSIEQALNALSQGKFVIVVDDENGDVEGNLIMAASLTSPKDIAFMIKHGSGIVSVGMKDEDLQRLNLPLMSPETEDEDSSAPTFSGFSCIGWLAPKLASEHTLPIGSITDLIRYRRKREKLVERTSVSRLPTKWGVFQAYCYSSKLDGTEHVAAVKGDIGDGQDVLVRVHSECLTGDIVGSARCDCGNQLDLAMRLIEEAGRGVVVYLRGHEGRGIELGHKLKAYNLQDQGHDTVQANIELGLAVDAREYGIGAQILRDIGVRTMWLMTNNPAKFVGLKGYGLAVLTPITEENKRYLETKRTKMGHIYGSDLQGSLPGFNDSIVNNGDSPVNT*






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