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Report for Sequence Feature Glyma.13g330900

Feature Type:gene_model
Chromosome:Gm13
Start:42540623
stop:42542229
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g330900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
GO:0005975GO-bp carbohydrate metabolic process EnsemblGenomesN/AIEA
GO:0005975GO-bp carbohydrate metabolic process JGI N/AIEA
GO:0006032GO-bp chitin catabolic process EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0004553GO-mf hydrolase activity, hydrolyzing O-glycosyl compounds JGI N/AIEA
GO:0004568GO-mf chitinase activity EnsemblGenomesN/AIEA
GO:0008061GO-mf chitin binding EnsemblGenomesN/AIEA
PF00704PFAM Glycosyl hydrolases family 18 JGI N/AIEA
PWY-6902SoyCyc9 chitin degradation II (Vibrio) Plant Metabolic Network ISS
GN7V-41368SoyCyc9-rxn chitinase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g330900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g330900
ParalogEvidenceComments
Glyma.15g043300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g330900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g40600 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g330900
>Glyma.13g330900.1 sequence-type=CDS polypeptide=Glyma.13g330900.1.p locus=Glyma.13g330900 ID=Glyma.13g330900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGTCCATATTCCGGCAATACACCTTGGACGACTCATTCTCGCAAGTGTTGGTGTCCCCGAAATTCCTGAAGGAGTACCAAATAGCCCTGACCTTCGCAAGCGACTACGACGACGACGGCGTCCCCACCAACGGGGTTTTCCGGCCAACCTGGGACCTAACCAAGGTGACCCCGGAATCAATCACGCGATTCAAGGATAAGAACCCCGACGTGGACATCAAAGTCTTCATCAGCATCGGCAACCGCGGCACCCAGCACCCCTTCAAACCCCTCAACAACCAAACCTGGATCCAGAACGCCACCATGTCCCTCACCAGCCTCATCAACAACCTCCACGTCGTCCACGGCATCGACGTCCTCTACGACCACATCGATGCCTCCCCCGCTGACTTTACCGAGTGCGTTGGCCAGCTCATTAGGAACCTCAAGGAAAACGGCGTCGTCTCCCAGGCTTCCATTTCTCCCTCGTCTTATCCCAACCAAGAATACTATCCGTTACTCTACAGCTCTGTGCCCTTCTTCGTTGACTGGGTCGATTACCAGTTCCAAAGCGAGGATCAACCTGTCTTGGAACCCACCACCTTGGTGAAGCGCTACAATGAATTAACCAAGGTTTATCCCAAAACAAAACTCTTTGCTGGCTACAGTGCTGAGAATGAGGACTGGGCCACAGTTTCCCCGTTCGTGTTCTTTTTGGGTGCCATGGACCTTCTCAAGAAGAGAAGTGCTCCTGGTGTTTCCATTCATTACCATAATTACTATGCATCAGAAGCTCCCAATAATAAGGACTGA
Predicted protein sequences of Glyma.13g330900
>Glyma.13g330900.1.p sequence-type=predicted peptide transcript=Glyma.13g330900.1 locus=Glyma.13g330900 ID=Glyma.13g330900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMSIFRQYTLDDSFSQVLVSPKFLKEYQIALTFASDYDDDGVPTNGVFRPTWDLTKVTPESITRFKDKNPDVDIKVFISIGNRGTQHPFKPLNNQTWIQNATMSLTSLINNLHVVHGIDVLYDHIDASPADFTECVGQLIRNLKENGVVSQASISPSSYPNQEYYPLLYSSVPFFVDWVDYQFQSEDQPVLEPTTLVKRYNELTKVYPKTKLFAGYSAENEDWATVSPFVFFLGAMDLLKKRSAPGVSIHYHNYYASEAPNNKD*






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