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Report for Sequence Feature Glyma.13g329600

Feature Type:gene_model
Chromosome:Gm13
Start:42402581
stop:42414266
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g329600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60170.2AT RNA binding (RRM/RBD/RNP motifs) family protein JGI N/AIEA
GO:0000288GO-bp nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay EnsemblGenomesN/AIEA
GO:0016567GO-bp protein ubiquitination EnsemblGenomesN/AIEA
GO:0030014GO-cc CCR4-NOT complex EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0004842GO-mf ubiquitin-protein transferase activity EnsemblGenomesN/AIEA
KOG2068 KOG MOT2 transcription factor JGI N/AIEA
PTHR12603Panther CCR4-NOT TRANSCRIPTION COMPLEX RELATED JGI N/AIEA
PF00076PFAM RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JGI N/AIEA

Expression Patterns of Glyma.13g329600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g329600
ParalogEvidenceComments
Glyma.15g044500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g329600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g40460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g329600
>Glyma.13g329600.1 sequence-type=CDS polypeptide=Glyma.13g329600.1.p locus=Glyma.13g329600 ID=Glyma.13g329600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGGCGATGGAATGGAGATCAACGTGGCTTTCGATGGTGGCATGTCCCTTGAAGGGAAGAAGACCCAACTTGGGGTGTGTAGAAACATGCTTAAAAGGGGCAATCATGAGTGACGAAGGAGAAAGGACTTGTCCTCTCTGTGCTGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCATGCAAATGTGGTTATCAGATATGTGTCTGGTGTTGGCATCACATACTGGAAATGGCTGAGAAGGATGACACAGAGGGACGATGCCCTGCATGTCGTTCTCCATATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGGCTGAAGTTCATATGGAAAAAAAGGTGAAGAACCAGAAAGCAAAGTCAAAATCTTCTGAAGCACGGAAGCAGCTCAGTAGTGTGCGAGTAATTCAGCGGAATCTGGTTTACATAGTGGGATTGCCTCTCAATCTGGCAGACGAAGATTTCCTCCAGCAGCGAGAATATTTTGGTCAGTATGGAAAGGTCTTAAAAGTGTCAATGTCTCGGACTACAGCTGGTGTTGTTCAGCAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCGAAGGAAGAAGAAGCAATTCGATGCATTCAAAATGTGCATGGATTCGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACTAAATATTGTCATGCATGGCTCAGAAACATGCCTTGCAGCAATCCAGATTGTCTATATCTTCATGAGATTGGCTCTCAAGAGGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGAAGTCATGTTCAACAAATTACTGGTGCTGCAAACAATATACAACGACAAGCAGGGAATGTATTGCCTCCTCCATTGGATGATTGCATGGATAATTCATCAGGAAAACCAATTGTGAAAAATTCATCAAGTACCTCTGTTAGCATTGTAAGAAGTTCACCTCCTAATGGAACTTCTGGGAGACCTATAGCTCTTTCTGCGGTTGCATGGGGTACACGGGCTACAAATTGTCAGCCAGCTGCTGATGGTTTATTATGTCCAAATGGACTGTCCAGGCCTAAACCTGATACAATCAGCAGCAGCCTACCCTTTTCCTCTGCTGTTGCATGCACAATTCAGGCTTCATTAAATAGTGATGTGACAAAGAGGCCACTGTTGAGTGATGGGAGTCGTAGTATGACACCTCAAATAAAAAATGAATTATTGAAACCTGTTGAACAAAATAGAAGCATGGATATCCTGGATAGTGCTGGTGAAAGAACTTTGGTTTCTGATGTTTCTCTTTCAGCTGTTAAATTGAACAACCAGTTGTCTTCTCTACCATTAGCCGGAGATAGTGGTAGAGGCAGCTTTACTGCAACTAACACAACTAGTTCAATTGACATCACTCGACAACCATTAAGCTTTGGTCCTGAGGAAGCAGTTATATCTACCTGTGAAGAGATTGAGAATTTGTCCTGCGAGTTTTCTTCTGTTTACATTGATAGAAATGCCCAAAATAAACACTACAGCCTATCCATACCTAGCAGCTCACCTGATAATGTGTTGGTTAAATCTATGCAATCTCAAGAATTGCAGTATAATACTGACAAATTGAAAGATTTAATGATTAAAAATGCAGACAGTAAAGCTGCTGCATTATATAATGAGGTTTGTAATTTAAAGGAACAGTGTGATTTGTCATTGGATTCTCAATCTCAAGTAGTATCAGCTAATACTGAAGTGGAAGATGATGTAACAACTTTTGATAATCAGAGACTTAAGGATCCAGAAGTTATTGGTTCTTATTTGCCCGAGTCAGCCAGTTTCCTTCATGTCTCAAATCATTCTAGTCCTCTTCTTCTGCAGCGTGGTGACCCATGTAATGTTGTAAATGCTGGTTTTTTAGATGCCAATGATAAAGTTGAGGATAACTCACTATTACATGCACATAACATATGCAATGGATATTCTGATGAGATCAGTACCAGTTCTTATTGGTTCCGCCATGATGCAAGCAATGAGCACCACATTGGAAGATTAGTTAGTGATGCAGTTAATATTGGAAGTGATGCTGTTATGGACAAGGGTGAGAGTAGTATAATTTCAAATATATTATCGATGGAGTTTGATGCCTGGGATGACTCGCTGGCATCACATGAGAGTTTGACCAAGTTGTTGGGTGACAACACTGACAGCCAGAATGGTCCGTTAAAAAAATCTAGTTCTAGGAAAGTTCAAAGTAACAATCAATCAAGATTTTCTTTTGCATGGCAGGAGGAATCCAAATTCCAAGCCAATGTACCTCCATCTTCTGGTGCTACCCAGCCATTTCCAAAGAATGGCTCACTCATCCAGGATTTTGTGGAAAGAGACTTTTCTTTGAACAAGCTGGGTTTTGCAAATGGCTTCCCCTCCAATAACCTCAAGGAATCTGGAAATCTTGGCAGTGGTCATTTCATTGCTTCAAACAATAAGCTTTCAGCTGTTTCAAGAGCACAAATTTCAGCACCGCCAGGATTCTCTGTTCCGAACAGGGCACCACCTCCTGGTTTCTCTTCAGTTGAGAGAATGGGGCAGGCTTTTGACTCCCTCTCTGGGAATTCATTGCTGGACCCTTCTTTCTTACTGAGAAATTCTTATCAAACACCCTCAAATGGAAATATTGGTGGTCCAGGTGACGTTGAATTTATGGATCCTGCTATTTTGGCAGTTAGTAAAGGCCCTGAACAGTTTAACTACTTTGAAAATGAGGCCAGAGTTCAATTATTGATGCAAAGATCTCCCTCACCACAGCAAGACCTTCGATTTTCTGAAATTGGGAATTCCTTTTCTCAGTTTGGTGATTCTTATGGCATTTCTTCAAGGTTAAATCAATCACAAGTTAGTAATCTGGCTTCATTTCCTCAGTTATCTCTGCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGCCAATTGGATGGGCGGAATGGAAATGGTCTGGGTGTGGCAGAGCTTTTGAGAAATGAAAGACTTGGATTTAACAAGTTTTATAGAGGATATGATGATTCAAAATATCGGATGCCTAATTCTATGGATGTGTTCAACAGGACATTTGGGATTTGA
Predicted protein sequences of Glyma.13g329600
>Glyma.13g329600.1.p sequence-type=predicted peptide transcript=Glyma.13g329600.1 locus=Glyma.13g329600 ID=Glyma.13g329600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLAMEWRSTWLSMVACPLKGRRPNLGCVETCLKGAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYQICVWCWHHILEMAEKDDTEGRCPACRSPYDKEKIVGMAANCERLVAEVHMEKKVKNQKAKSKSSEARKQLSSVRVIQRNLVYIVGLPLNLADEDFLQQREYFGQYGKVLKVSMSRTTAGVVQQFPNNTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSHVQQITGAANNIQRQAGNVLPPPLDDCMDNSSGKPIVKNSSSTSVSIVRSSPPNGTSGRPIALSAVAWGTRATNCQPAADGLLCPNGLSRPKPDTISSSLPFSSAVACTIQASLNSDVTKRPLLSDGSRSMTPQIKNELLKPVEQNRSMDILDSAGERTLVSDVSLSAVKLNNQLSSLPLAGDSGRGSFTATNTTSSIDITRQPLSFGPEEAVISTCEEIENLSCEFSSVYIDRNAQNKHYSLSIPSSSPDNVLVKSMQSQELQYNTDKLKDLMIKNADSKAAALYNEVCNLKEQCDLSLDSQSQVVSANTEVEDDVTTFDNQRLKDPEVIGSYLPESASFLHVSNHSSPLLLQRGDPCNVVNAGFLDANDKVEDNSLLHAHNICNGYSDEISTSSYWFRHDASNEHHIGRLVSDAVNIGSDAVMDKGESSIISNILSMEFDAWDDSLASHESLTKLLGDNTDSQNGPLKKSSSRKVQSNNQSRFSFAWQEESKFQANVPPSSGATQPFPKNGSLIQDFVERDFSLNKLGFANGFPSNNLKESGNLGSGHFIASNNKLSAVSRAQISAPPGFSVPNRAPPPGFSSVERMGQAFDSLSGNSLLDPSFLLRNSYQTPSNGNIGGPGDVEFMDPAILAVSKGPEQFNYFENEARVQLLMQRSPSPQQDLRFSEIGNSFSQFGDSYGISSRLNQSQVSNLASFPQLSLQQSRNAVLSNGQLDGRNGNGLGVAELLRNERLGFNKFYRGYDDSKYRMPNSMDVFNRTFGI*






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