Glyma.13g329300

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Report for Sequence Feature Glyma.13g329300

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42384963
stop:	42388359
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g329300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G45620.1	AT	Transducin/WD40 repeat-like superfamily protein	JGI	N/A	IEA
AT3G45620.2	AT	Transducin/WD40 repeat-like superfamily protein	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
KOG0265	KOG	U5 snRNP-specific protein-like factor and related proteins	JGI	N/A	IEA
KOG1334	KOG	WD40 repeat protein	JGI	N/A	IEA
PTHR15574	Panther	WD REPEAT DOMAIN-CONTAINING FAMILY	JGI	N/A	IEA
PTHR15574:SF16	Panther		JGI	N/A	IEA
PF00400	PFAM	WD domain, G-beta repeat	JGI	N/A	IEA

Expression Patterns of Glyma.13g329300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g329300 not represented in the dataset	Glyma.13g329300 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g329300

Paralog	Evidence	Comments
Glyma.15g044600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g329300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g40440	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g329300

Limit To All Plant Sequences

>Glyma.13g329300.2 sequence-type=transcript locus=Glyma.13g329300 ID=Glyma.13g329300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACGCACAGACGCAACGCAGCAATCACCGCCGAAAGGGATATGAATGAGGCAGGGCTAAAAATAATAAAAAATCACAATCTCTGTCTACGCAATTGCATATGACGACACGTCGTCGTTTGCGAAAAGCATTAACCACCCAAATTTAGCGTCTTCCACGCTCGTTTGTTGCACCAAAGGAATCATCTACTTCTGTAACTTCAACAAGTAGACGCAACACACTCTGAAAATTTCATCGAAATGGAAAATCTCCATAGCCATAGGGGCATTACTAATGCTACCACTAGTCCTCCACATGGCTTTACAGATATTTTCAGAAGAGAGTTAGGTTTGTCTCATCCCAACAGTTTCGCGCGTCGTTTTTCAGCTTCCGAGGTCCTTGTGAAGAGCTTGGATTTATATGGGAAGTTGGATGGTCATGAAGGGTGTGTGAATGCAGTGGAATTTAACTCCACCGGTGACATTCTTGTTTCTGGTTCTGATGACCGACAAATTATGTTTTGGAATTGGGAATCCAAAACTAAATTGTTTGCATACCCTTCTGGCCACACAGACAACATATTCCAGACAAAGATTATGCCATTCACCGATGACTGCCGAATTGTGACTTCTGCTGGTGATGGCCAGAACATCAGATGGAGGGGTCGAGTCTAGCAGAATGGACTAGTCTCATAGAACATGGTGAATCAAGATTTGAATCCCTACTGGCTACTAGGAGAGATAAGGCTTGGCCTTCTCTGGGAGGATGGTAGAGTTGACACTACAATGTTGGGGAAGCACCATGGTTGTGTATACAAGCTTGCTGTGGAGCCTGGAAGTGCCCACATATTTTACAGTTCCGGTGAAGATGGATTTATTCAACATTTTGATTTGCGAAGTAATTCTGCTACGAAACTTTTCTGTTGTTCCTCATCAATAGGAAACAATAAACAGACTCTAAGCAAAGTAGGGTTGAATTCCATTGTGATTGACTGTAGAAATCCATATTACTTTGCTATCGGTGGATCTGATGAATATGCACGTGTTTATGACATGAGAAAATGCCAGTGGGATTCAGCAAGAAATTCAGATCGACCTGTTAACACATTTTGCCCTCGTCACTTAATTGGTTCAAATAATGTCCATATCACTGGATTGGCTTACTCAAGCTTTGGTGAACTCCTTGTTTCTTATAATGATGAGCTCATCTATCTGTTTGAAAAGAATATGCACTCGGATTCTTCACCTTCATCTGCTACATCTGAGGATTCGAAGAATATTCATGAGGCACAAGTTTACTCAGGCCACAGAAATGCACAGACAATTAAAGGAGTGAATTTTTTTGGCCCAAATGATGAATATGTCTTGAGTGGTTCAGATTGTGGCCATATATTCATCTGGAAGAAGAAGGAAGCTAAGCTGGTGAGATTAATGGTAGGTGATCAACATGTTGTAAATCAACATGAGGCCCATCCGCATATACCTATTCTTGCTACTTGTGGTATAGAAAAAAATGTGAAAATCTGGGCTCCTCTAGGGAATGATATACCTCCACTTCCAGGAAATGTGAAAGAGATAATGGAGACAAACAGACAGGGCAGAGAAGACCGATCACAGGTAACCCTTACTCCTGATGTTATAATGCATGTTCTTCGCCTGCAGAGGCGGCAGACATTGGCATATATTGAAAGAAGACATAATAGGGCAGATATTGTGAGTGATGAAGAAGATGCAGAGGGCTACCTTTTAGGATTCTTAGATGGTGATGCCTCTTCTGAAGAGGATTATCCTGGAAATTCCAGAGATTGCAACATTAGCTAAAGCTTAAAGAAGCGGGTTTGGTTGCTTTGCCTGACTAATTCCATAGAAACAGTAAATGATGTTGGCTTCACTGTTTTTCACTAAGCAGTACCATACATGTTTGAAACGTGCGCTAATAAACACCATTGGGGAAACAGTGTGCAGAGGTGTAAAATCTGGATTGTTCTAGTTAAAATTCAGATATTATGATGTGTACAGGTATAAAGTAAGTATAAATGTGATTGGTAACTGAAACTAGTGTAAATTTCATATTGTACAAATAAGTGAATAACCCTGTTCTTTATTTTAGAATGTTGAATGTTAATGGTGTTTTTCATCA

>Glyma.13g329300.3 sequence-type=transcript locus=Glyma.13g329300 ID=Glyma.13g329300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAAGATATGATGCCTCTTTGTCTGTTATCCAAATGATATTAAAAAATTCCCATACTGATAGTCTAGACTCTTCATTTAAGCTCAACCCAACTTATGCTTTTTCTAAAGTGTCTGCTTGAGTCTCCTCCATTGGAAACTGATATTTCCTTTGCAGATAAGGCTTGGCCTTCTCTGGGAGGATGGTAGAGTTGACACTACAATGTTGGGGAAGCACCATGGTTGTGTATACAAGCTTGCTGTGGAGCCTGGAAGTGCCCACATATTTTACAGTTCCGGTGAAGATGGATTTATTCAACATTTTGATTTGCGAAGTAATTCTGCTACGAAACTTTTCTGTTGTTCCTCATCAATAGGAAACAATAAACAGACTCTAAGCAAAGTAGGGTTGAATTCCATTGTGATTGACTGTAGAAATCCATATTACTTTGCTATCGGTGGATCTGATGAATATGCACGTGTTTATGACATGAGAAAATGCCAGTGGGATTCAGCAAGAAATTCAGATCGACCTGTTAACACATTTTGCCCTCGTCACTTAATTGGTTCAAATAATGTCCATATCACTGGATTGGCTTACTCAAGCTTTGGTGAACTCCTTGTTTCTTATAATGATGAGCTCATCTATCTGTTTGAAAAGAATATGCACTCGGATTCTTCACCTTCATCTGCTACATCTGAGGATTCGAAGAATATTCATGAGGCACAAGTTTACTCAGGCCACAGAAATGCACAGACAATTAAAGGAGTGAATTTTTTTGGCCCAAATGATGAATATGTCTTGAGTGGTTCAGATTGTGGCCATATATTCATCTGGAAGAAGAAGGAAGCTAAGCTGGTGAGATTAATGGTAGGTGATCAACATGTTGTAAATCAACATGAGGCCCATCCGCATATACCTATTCTTGCTACTTGTGGTATAGAAAAAAATGTGAAAATCTGGGCTCCTCTAGGGAATGATATACCTCCACTTCCAGGAAATGTGAAAGAGATAATGGAGACAAACAGACAGGGCAGAGAAGACCGATCACAGGTAACCCTTACTCCTGATGTTATAATGCATGTTCTTCGCCTGCAGAGGCGGCAGACATTGGCATATATTGAAAGAAGACATAATAGGGCAGATATTGTGAGTGATGAAGAAGATGCAGAGGGCTACCTTTTAGGATTCTTAGATGGTGATGCCTCTTCTGAAGAGGATTATCCTGGAAATTCCAGAGATTGCAACATTAGCTAAAGCTTAAAGAAGCGGGTTTGGTTGCTTTGCCTGACTAATTCCATAGAAACAGTAAATGATGTTGGCTTCACTGTTTTTCACTAAGCAGTACCATACATGTTTGAAACGTGCGCTAATAAACACCATTGGGGAAACAGTGTGCAGAGGTGTAAAATCTGGATTGTTCTAGTTAAAATTCAGATATTATGATGTGTACAGGTATAAAGTAAGTATAAATGTGATTGGTAACTGAAACTAGTGTAAATTTCATATTGTACAAATAAGTGAATAACCCTGTTCTTTATTTTAGAATGTTGAATGTTAATGGTGTTTTTCATCA

Coding sequences of Glyma.13g329300

Limit To All Plant Sequences

>Glyma.13g329300.1 sequence-type=CDS polypeptide=Glyma.13g329300.1.p locus=Glyma.13g329300 ID=Glyma.13g329300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAATCTCCATAGCCATAGGGGCATTACTAATGCTACCACTAGTCCTCCACATGGCTTTACAGATATTTTCAGAAGAGAGTTAGGTTTGTCTCATCCCAACAGTTTCGCGCGTCGTTTTTCAGCTTCCGAGGTCCTTGTGAAGAGCTTGGATTTATATGGGAAGTTGGATGGTCATGAAGGGTGTGTGAATGCAGTGGAATTTAACTCCACCGGTGACATTCTTGTTTCTGGTTCTGATGACCGACAAATTATGTTTTGGAATTGGGAATCCAAAACTAAATTGTTTGCATACCCTTCTGGCCACACAGACAACATATTCCAGACAAAGATTATGCCATTCACCGATGACTGCCGAATTGTGACTTCTGCTGGTGATGGCCAGATAAGGCTTGGCCTTCTCTGGGAGGATGGTAGAGTTGACACTACAATGTTGGGGAAGCACCATGGTTGTGTATACAAGCTTGCTGTGGAGCCTGGAAGTGCCCACATATTTTACAGTTCCGGTGAAGATGGATTTATTCAACATTTTGATTTGCGAAGTAATTCTGCTACGAAACTTTTCTGTTGTTCCTCATCAATAGGAAACAATAAACAGACTCTAAGCAAAGTAGGGTTGAATTCCATTGTGATTGACTGTAGAAATCCATATTACTTTGCTATCGGTGGATCTGATGAATATGCACGTGTTTATGACATGAGAAAATGCCAGTGGGATTCAGCAAGAAATTCAGATCGACCTGTTAACACATTTTGCCCTCGTCACTTAATTGGTTCAAATAATGTCCATATCACTGGATTGGCTTACTCAAGCTTTGGTGAACTCCTTGTTTCTTATAATGATGAGCTCATCTATCTGTTTGAAAAGAATATGCACTCGGATTCTTCACCTTCATCTGCTACATCTGAGGATTCGAAGAATATTCATGAGGCACAAGTTTACTCAGGCCACAGAAATGCACAGACAATTAAAGGAGTGAATTTTTTTGGCCCAAATGATGAATATGTCTTGAGTGGTTCAGATTGTGGCCATATATTCATCTGGAAGAAGAAGGAAGCTAAGCTGGTGAGATTAATGGTAGGTGATCAACATGTTGTAAATCAACATGAGGCCCATCCGCATATACCTATTCTTGCTACTTGTGGTATAGAAAAAAATGTGAAAATCTGGGCTCCTCTAGGGAATGATATACCTCCACTTCCAGGAAATGTGAAAGAGATAATGGAGACAAACAGACAGGGCAGAGAAGACCGATCACAGGTAACCCTTACTCCTGATGTTATAATGCATGTTCTTCGCCTGCAGAGGCGGCAGACATTGGCATATATTGAAAGAAGACATAATAGGGCAGATATTGTGAGTGATGAAGAAGATGCAGAGGGCTACCTTTTAGGATTCTTAGATGGTGATGCCTCTTCTGAAGAGGATTATCCTGGAAATTCCAGAGATTGCAACATTAGCTAA

>Glyma.13g329300.2 sequence-type=CDS polypeptide=Glyma.13g329300.2.p locus=Glyma.13g329300 ID=Glyma.13g329300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTGAATCAAGATTTGAATCCCTACTGGCTACTAGGAGAGATAAGGCTTGGCCTTCTCTGGGAGGATGGTAGAGTTGACACTACAATGTTGGGGAAGCACCATGGTTGTGTATACAAGCTTGCTGTGGAGCCTGGAAGTGCCCACATATTTTACAGTTCCGGTGAAGATGGATTTATTCAACATTTTGATTTGCGAAGTAATTCTGCTACGAAACTTTTCTGTTGTTCCTCATCAATAGGAAACAATAAACAGACTCTAAGCAAAGTAGGGTTGAATTCCATTGTGATTGACTGTAGAAATCCATATTACTTTGCTATCGGTGGATCTGATGAATATGCACGTGTTTATGACATGAGAAAATGCCAGTGGGATTCAGCAAGAAATTCAGATCGACCTGTTAACACATTTTGCCCTCGTCACTTAATTGGTTCAAATAATGTCCATATCACTGGATTGGCTTACTCAAGCTTTGGTGAACTCCTTGTTTCTTATAATGATGAGCTCATCTATCTGTTTGAAAAGAATATGCACTCGGATTCTTCACCTTCATCTGCTACATCTGAGGATTCGAAGAATATTCATGAGGCACAAGTTTACTCAGGCCACAGAAATGCACAGACAATTAAAGGAGTGAATTTTTTTGGCCCAAATGATGAATATGTCTTGAGTGGTTCAGATTGTGGCCATATATTCATCTGGAAGAAGAAGGAAGCTAAGCTGGTGAGATTAATGGTAGGTGATCAACATGTTGTAAATCAACATGAGGCCCATCCGCATATACCTATTCTTGCTACTTGTGGTATAGAAAAAAATGTGAAAATCTGGGCTCCTCTAGGGAATGATATACCTCCACTTCCAGGAAATGTGAAAGAGATAATGGAGACAAACAGACAGGGCAGAGAAGACCGATCACAGGTAACCCTTACTCCTGATGTTATAATGCATGTTCTTCGCCTGCAGAGGCGGCAGACATTGGCATATATTGAAAGAAGACATAATAGGGCAGATATTGTGAGTGATGAAGAAGATGCAGAGGGCTACCTTTTAGGATTCTTAGATGGTGATGCCTCTTCTGAAGAGGATTATCCTGGAAATTCCAGAGATTGCAACATTAGCTAA

>Glyma.13g329300.3 sequence-type=CDS polypeptide=Glyma.13g329300.3.p locus=Glyma.13g329300 ID=Glyma.13g329300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTGGGGAAGCACCATGGTTGTGTATACAAGCTTGCTGTGGAGCCTGGAAGTGCCCACATATTTTACAGTTCCGGTGAAGATGGATTTATTCAACATTTTGATTTGCGAAGTAATTCTGCTACGAAACTTTTCTGTTGTTCCTCATCAATAGGAAACAATAAACAGACTCTAAGCAAAGTAGGGTTGAATTCCATTGTGATTGACTGTAGAAATCCATATTACTTTGCTATCGGTGGATCTGATGAATATGCACGTGTTTATGACATGAGAAAATGCCAGTGGGATTCAGCAAGAAATTCAGATCGACCTGTTAACACATTTTGCCCTCGTCACTTAATTGGTTCAAATAATGTCCATATCACTGGATTGGCTTACTCAAGCTTTGGTGAACTCCTTGTTTCTTATAATGATGAGCTCATCTATCTGTTTGAAAAGAATATGCACTCGGATTCTTCACCTTCATCTGCTACATCTGAGGATTCGAAGAATATTCATGAGGCACAAGTTTACTCAGGCCACAGAAATGCACAGACAATTAAAGGAGTGAATTTTTTTGGCCCAAATGATGAATATGTCTTGAGTGGTTCAGATTGTGGCCATATATTCATCTGGAAGAAGAAGGAAGCTAAGCTGGTGAGATTAATGGTAGGTGATCAACATGTTGTAAATCAACATGAGGCCCATCCGCATATACCTATTCTTGCTACTTGTGGTATAGAAAAAAATGTGAAAATCTGGGCTCCTCTAGGGAATGATATACCTCCACTTCCAGGAAATGTGAAAGAGATAATGGAGACAAACAGACAGGGCAGAGAAGACCGATCACAGGTAACCCTTACTCCTGATGTTATAATGCATGTTCTTCGCCTGCAGAGGCGGCAGACATTGGCATATATTGAAAGAAGACATAATAGGGCAGATATTGTGAGTGATGAAGAAGATGCAGAGGGCTACCTTTTAGGATTCTTAGATGGTGATGCCTCTTCTGAAGAGGATTATCCTGGAAATTCCAGAGATTGCAACATTAGCTAA

Predicted protein sequences of Glyma.13g329300

Limit To All Plant Sequences

>Glyma.13g329300.1.p sequence-type=predicted peptide transcript=Glyma.13g329300.1 locus=Glyma.13g329300 ID=Glyma.13g329300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENLHSHRGITNATTSPPHGFTDIFRRELGLSHPNSFARRFSASEVLVKSLDLYGKLDGHEGCVNAVEFNSTGDILVSGSDDRQIMFWNWESKTKLFAYPSGHTDNIFQTKIMPFTDDCRIVTSAGDGQIRLGLLWEDGRVDTTMLGKHHGCVYKLAVEPGSAHIFYSSGEDGFIQHFDLRSNSATKLFCCSSSIGNNKQTLSKVGLNSIVIDCRNPYYFAIGGSDEYARVYDMRKCQWDSARNSDRPVNTFCPRHLIGSNNVHITGLAYSSFGELLVSYNDELIYLFEKNMHSDSSPSSATSEDSKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYVLSGSDCGHIFIWKKKEAKLVRLMVGDQHVVNQHEAHPHIPILATCGIEKNVKIWAPLGNDIPPLPGNVKEIMETNRQGREDRSQVTLTPDVIMHVLRLQRRQTLAYIERRHNRADIVSDEEDAEGYLLGFLDGDASSEEDYPGNSRDCNIS*

>Glyma.13g329300.2.p sequence-type=predicted peptide transcript=Glyma.13g329300.2 locus=Glyma.13g329300 ID=Glyma.13g329300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVNQDLNPYWLLGEIRLGLLWEDGRVDTTMLGKHHGCVYKLAVEPGSAHIFYSSGEDGFIQHFDLRSNSATKLFCCSSSIGNNKQTLSKVGLNSIVIDCRNPYYFAIGGSDEYARVYDMRKCQWDSARNSDRPVNTFCPRHLIGSNNVHITGLAYSSFGELLVSYNDELIYLFEKNMHSDSSPSSATSEDSKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYVLSGSDCGHIFIWKKKEAKLVRLMVGDQHVVNQHEAHPHIPILATCGIEKNVKIWAPLGNDIPPLPGNVKEIMETNRQGREDRSQVTLTPDVIMHVLRLQRRQTLAYIERRHNRADIVSDEEDAEGYLLGFLDGDASSEEDYPGNSRDCNIS*

>Glyma.13g329300.3.p sequence-type=predicted peptide transcript=Glyma.13g329300.3 locus=Glyma.13g329300 ID=Glyma.13g329300.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLGKHHGCVYKLAVEPGSAHIFYSSGEDGFIQHFDLRSNSATKLFCCSSSIGNNKQTLSKVGLNSIVIDCRNPYYFAIGGSDEYARVYDMRKCQWDSARNSDRPVNTFCPRHLIGSNNVHITGLAYSSFGELLVSYNDELIYLFEKNMHSDSSPSSATSEDSKNIHEAQVYSGHRNAQTIKGVNFFGPNDEYVLSGSDCGHIFIWKKKEAKLVRLMVGDQHVVNQHEAHPHIPILATCGIEKNVKIWAPLGNDIPPLPGNVKEIMETNRQGREDRSQVTLTPDVIMHVLRLQRRQTLAYIERRHNRADIVSDEEDAEGYLLGFLDGDASSEEDYPGNSRDCNIS*

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