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Report for Sequence Feature Glyma.13g325900

Feature Type:gene_model
Chromosome:Gm13
Start:42110189
stop:42111968
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g325900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37170.1AT plasma membrane intrinsic protein 2 JGI N/AIEA
GO:0006810GO-bp transport JGI N/AIEA
GO:0006833GO-bp water transport EnsemblGenomesN/AIEA
GO:0034220GO-bp ion transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0005887GO-cc integral component of plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0005215GO-mf transporter activity EnsemblGenomesN/AIEA
GO:0005215GO-mf transporter activity JGI N/AIEA
GO:0015250GO-mf water channel activity EnsemblGenomesN/AIEA
GO:0015267GO-mf channel activity EnsemblGenomesN/AIEA
KOG0223 KOG Aquaporin (major intrinsic protein family) JGI N/AIEA
PTHR19139Panther AQUAPORIN TRANSPORTER JGI N/AIEA
PTHR19139:SF27Panther JGI N/AIEA
PF00230PFAM Major intrinsic protein JGI N/AIEA

Proteins Associated with Glyma.13g325900
LocusGene SymbolProtein Name
PIP2-6 aquaporin PIP2-6

Expression Patterns of Glyma.13g325900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g325900
ParalogEvidenceComments
Glyma.12g172500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g325900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g40100 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g325900
>Glyma.13g325900.2 sequence-type=transcript locus=Glyma.13g325900 ID=Glyma.13g325900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCACTCTTCCTTAAATACCATCATCTTTCTTcacaccacacaccacacaccacacacaTAGTAGCTATTATACTCTCTAGAGTAATTGCGGAATCTGCTAGAATTTTCTAATAATGGCGAAAGACGTTGAGCAGGTCACAGAGCAAGGTGAATACTCCGCGaaggactaccatgaccctcctccggcaccgttgatcgacccagatgagctcacaaagtggtccttgtacagagccgccatagctgagttcatagcaacactcctttttctttacatcaccgtgttgaccattattggctacaagagacagagtgacaccaaaatccccggtaacaccgaatgtgacggcgttggcattttgggcatcgcttgggccttcggtggcatgatcttcatccttgtttactgcactgccggaatctctgGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTAAGCATACCTTAATTCTTATTAGCTAGGTTTGGTGTTTTTGCTGGAACATATATCTGACGATATATATTTTTTTTTCTTAATTAATAATTACTTACTCATTCATTCAATTTACTTTAATAAAGGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTGTCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAAGTAAGTAAACCTTAACTTTTGGACAAATTAAGGTTTATTTTTTACATGAAAAAATATATATATTTGTTAACACCAATAACATATGATTGTGATTGTTCTTTTTAGTGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCAATCTACCATCAATACATTCTTAGAGGTTCTGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAATTAAAAAAAAAAAAAAATCAAGTTTCTCCACTACCTAAATTATGATGATTTTGGTCCTGTGTCACCCAAAACAAGAACAGTGTTTCAGTTCAAGTCTGTCTACAGGTCCCTCTCTTTTGGCTTTTCTGCTTACCCGTGGGTTTGGGGGAAAAGCCAAATACCGTGGGCTCTTGAATTTGTAGATAAGAATGCTTTTATGTCAAGGGTGTATTTGTATCCCTTTTGTTTTTAATTTCTTTTTTCTTCCAAGTATTTATCATCATGTGTTCACTTTTATATAATGTGGAGGATCATTAGCCAAGTTTTCTTTTTGCCTGTTTCATTCGTAAGTGGTGTATCTTCATCATCATCATGCTTCCGCACAAAAATTTATCACTCTTTACCTCTGTTCCGAATGCCTTAACAATTATCATCAATCTTGACTTTAGTAATTGAACTTTTCCGC
Coding sequences of Glyma.13g325900
>Glyma.13g325900.1 sequence-type=CDS polypeptide=Glyma.13g325900.1.p locus=Glyma.13g325900 ID=Glyma.13g325900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAAGACGTTGAGCAGGTCACAGAGCAAGGTGAATACTCCGCGAAGGACTACCATGACCCTCCTCCGGCACCGTTGATCGACCCAGATGAGCTCACAAAGTGGTCCTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACACTCCTTTTTCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGACACCAAAATCCCCGGTAACACCGAATGTGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTGTTAGCACCACTTCCCATTGGGTTTGCCGTCTTCATGGTTCACTTGGCTACAATCCCTGTCACTGGAACCGGCATTAACCCTGCAAGGAGTTTCGGACCAGCTGTGATCTTCAACAACGACAAAGCCTGGGACGACCAATGGATTTACTGGGTTGGACCGTTTGTTGGAGCTGCGGTGGCTGCAATCTACCATCAATACATTCTTAGAGGTTCTGCAATCAAAGCTCTTGGATCCTTCAGGAGCAACGCTTAA

>Glyma.13g325900.2 sequence-type=CDS polypeptide=Glyma.13g325900.2.p locus=Glyma.13g325900 ID=Glyma.13g325900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAAAGACGTTGAGCAGGTCACAGAGCAAGGTGAATACTCCGCGAAGGACTACCATGACCCTCCTCCGGCACCGTTGATCGACCCAGATGAGCTCACAAAGTGGTCCTTGTACAGAGCCGCCATAGCTGAGTTCATAGCAACACTCCTTTTTCTTTACATCACCGTGTTGACCATTATTGGCTACAAGAGACAGAGTGACACCAAAATCCCCGGTAACACCGAATGTGACGGCGTTGGCATTTTGGGCATCGCTTGGGCCTTCGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCCGGAATCTCTGGGGGACACATCAACCCTGCGGTGACATTCGGGTTGTTCCTTGGACGCAAGGTGTCTTTGGTGAGGGCGTTGTTGTACATGATAGCACAGTGTGCCGGTGCAATCTGCGGTGCTGGGTTGGCCAAAGGGTTCCAGAAATCGTTCTACAACAGGTACGGAGGTGGGGTTAACACTGTCAGCGATGGCTACAACAAAGGTACCGCTTTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACCGTTTTCTCCGCCACTGATCCTAAGAGGAACGCTAGGGACTCTCATGTTCCTGTAAGCATACCTTAA
Predicted protein sequences of Glyma.13g325900
>Glyma.13g325900.1.p sequence-type=predicted peptide transcript=Glyma.13g325900.1 locus=Glyma.13g325900 ID=Glyma.13g325900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALGSFRSNA*

>Glyma.13g325900.2.p sequence-type=predicted peptide transcript=Glyma.13g325900.2 locus=Glyma.13g325900 ID=Glyma.13g325900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAKDVEQVTEQGEYSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLGRKVSLVRALLYMIAQCAGAICGAGLAKGFQKSFYNRYGGGVNTVSDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVSIP*






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