Glyma.13g325700

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Report for Sequence Feature Glyma.13g325700

Feature Type:	gene_model
Chromosome:	Gm13
Start:	42090699
stop:	42096267
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g325700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28390.1	AT	SAND family protein	JGI	N/A	IEA
GO:0016192	GO-bp	vesicle-mediated transport	EnsemblGenomes	N/A	IEA
GO:0012505	GO-cc	endomembrane system	EnsemblGenomes	N/A	IEA
KOG0997	KOG	Uncharacterized conserved protein Sand	JGI	N/A	IEA
PTHR13027	Panther	SAND PROTEIN-RELATED	JGI	N/A	IEA
PTHR13027:SF7	Panther	PROTEIN SAND-1	JGI	N/A	IEA
PF03164	PFAM	Trafficking protein Mon1	JGI	N/A	IEA

Expression Patterns of Glyma.13g325700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g325700 not represented in the dataset	Glyma.13g325700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g325700

Paralog	Evidence	Comments
Glyma.12g172200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g325700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g40080	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g325700

Limit To All Plant Sequences

>Glyma.13g325700.2 sequence-type=transcript locus=Glyma.13g325700 ID=Glyma.13g325700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TCAGAGGGAAGCCAAGATTGGAGGTGCATGAAGCAGTTACCCAGATGTAGGAGTGGCTAATTGCAGGCTTGGGCCTTGGGGAACATGTTAGGCCGCCGGCCCACAGATGGCAGTGCGTGGCGGGATGCACCCTGGACGCATGTACTCAGACTCGACTCCGCCAAAGCAAGCAAAGCACCAGCGTCCAGCGACTCAAAtctctctctctctctctTCATTATCTTCACAATCGAAGAATTGCAGTGAGTGAGATGAGTTCAGCGGATCATGACTCCGACCCTCCCATCCGACTCGACTTGCCTCCGCTCTCACCGAGCCTCTTCGATTCCGAACCATCATCGGAGCTCCAACAACAATCCAACGGATCCGCCGCCCGACCCTCCTCCTACCCCTCCAGCCCCACTAGTAGCGGTTACGCCGCCGAAAGGGGCAGTAGCAGCACCGCCTCAAGCATCTCCCAGGTCGATGACGTCCTCCACCACGAAATTCAAGAGATCACCATCCACGATTCCCAACCTCAACCTCCCTCTCACTCCTCCTGGCTTCCCGGAAAACGACACGCCGATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTAATTCTGGCAAACCAATATATTCTAGGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGGGGTGACCATGTCAAATTAGTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTTATGGCCAGATGATTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTACCTCTTGCATATGCAACCAGGCAAGCTGCCGGTGCTATCTTGCAGGACGTTGCTGATTCTGGTGTTCTGTTTGCTATTCTGATGTGCAGACACAAGGTTATCAGTCTAGTTGGTGCTCAGAAAGCCTCTCTTCATCCAGATGATATGCTGCTCCTGGCCAACTTTGTTATGTCATCAGAATCCTTTAGGACTTCAGAAGCATTTTCTCCCGTGTGCTTGCCAAGATACAATGGTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGATGATGACACATACTTGATGTTGCTGACCACTAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGGATTCGTATTGAAACGGTACTTTTGAAGTCAAATGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGTGGGATGCATGTTGAGGATGTACCGCCCTTACCTAGTTCTGGATCATCTCCTCATTTGAGCCAGCATAGGCTTCCATCAGATTCTCCTGAAAGGGAACCTAATTGTCACATTGGTGGTGTTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCACCGATTAACACTCCTAAGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATTGTGATTCTTGTTTTGTAGTTATAATACATCCAAGAGATTGATTTGTGATATTCTGAGTATGTAGTTATGACCTGAATTGCCTGATGCATTTATTTATGTTGAATCTATGAATTACGGTTTTCTTCTTATGGGGAAAAAGTGGAGGTGGTAATAGTCCTTTTTTGCAGTTTTAGTCCTGGATCTGGATGTTTCAGAAGGAATGATTCTATCAATAAGCAAACCCCTTATTTTCTGTGAGATGCATTTAGAGATTCATACCAATAATAGACAAGCCAATCTATACATGTGGGATATAGTTGCACTATTATATTTTGGATGCTTTGATGAACTCTGATCAGACTTGTAATAATTTTATTTGGCAGTTCTGCTCTGTTGGGTAACACAGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGGCCTTGGCAATAAAGACGTGCAATCGGGTGTGTCAGTGGGTAAAAGATGTGGAAAATGAAATATTTTTGCTGGGAGCTAGCCCCTTTTCATGGTGATTTTCAATCAATTACTGTAAACATGCGAGAGTGTTTATTTAATAAAATTTCTATAGAATTTAATCTTTCCTGTTTTTTTTCCTCGTTATGTTCTATTAAGAAAGTATCTGATGGAAAATCTTTGTATTAGTGTTTACAGCAGAACTGCAGTTTGCTTGTAACTATTCAAATACTATTAGTGCTGTAGTTTATAGGTCATGTTTGGATAAATTTATCCATACGTAACTTATAGGAGAAGAAAATAAGAAAGCCAAATAATACTTCTTGGATAAGTTAAAATAAACTTGATACACTTGATTTTTTAGAAGTTTTTTTTCATTTAACTTCTATAAAAGTTAGAGTGCATAAGTTGTTAATTTCAATATATTTTACTTTCTTATTTTCTTCTCTTATAAATATTTATGAAGTTTATCCAAACAAGGCCATAGACTGGTTGGTTGGTGTGGTGGCTCCAGTGGGCTATTTTTGAGGGATGATGTTTCATCTAAAGCTCATTATGTTAAAAAAATTATATCTGATTCCATTGATAGATGAGAGAGCTTGGAGGGACGATACATACATTCATCTTTGCTTGGTTTTGTGTCTAAATATCGATTGAAGATTTGAGTGTAAATGCGGTTGAGGCCCCATGCTTAGCTTCTCATTCACAGAGGTGTAGGCATTAGGTTTGGTTCTAGTTCTGGTTTGGGCCGAATTTGAGCTGCAATCTGGGAAGTGGGGATGGAATGTGAATTTGAAGAAAGTGACAGAGTCTAGCATAACATTTACTCTCCATGAAATAATAATGTTTACTCCAATTCATAGAGGCCACGAAATTGGGAATGGTTATAGGGGTATTTGC

Coding sequences of Glyma.13g325700

Limit To All Plant Sequences

>Glyma.13g325700.1 sequence-type=CDS polypeptide=Glyma.13g325700.1.p locus=Glyma.13g325700 ID=Glyma.13g325700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTCAGCGGATCATGACTCCGACCCTCCCATCCGACTCGACTTGCCTCCGCTCTCACCGAGCCTCTTCGATTCCGAACCATCATCGGAGCTCCAACAACAATCCAACGGATCCGCCGCCCGACCCTCCTCCTACCCCTCCAGCCCCACTAGTAGCGGTTACGCCGCCGAAAGGGGCAGTAGCAGCACCGCCTCAAGCATCTCCCAGGTCGATGACGTCCTCCACCACGAAATTCAAGAGATCACCATCCACGATTCCCAACCTCAACCTCCCTCTCACTCCTCCTGGCTTCCCGGAAAACGACACGCCGATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTAATTCTGGCAAACCAATATATTCTAGGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGGGGTGACCATGTCAAATTAGTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTTATGGCCAGATGATTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTACCTCTTGCATATGCAACCAGGCAAGCTGCCGGTGCTATCTTGCAGGACGTTGCTGATTCTGGTGTTCTGTTTGCTATTCTGATGTGCAGACACAAGGTTATCAGTCTAGTTGGTGCTCAGAAAGCCTCTCTTCATCCAGATGATATGCTGCTCCTGGCCAACTTTGTTATGTCATCAGAATCCTTTAGGACTTCAGAAGCATTTTCTCCCGTGTGCTTGCCAAGATACAATGGTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGATGATGACACATACTTGATGTTGCTGACCACTAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGGATTCGTATTGAAACGGTACTTTTGAAGTCAAATGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGTGGGATGCATGTTGAGGATGTACCGCCCTTACCTAGTTCTGGATCATCTCCTCATTTGAGCCAGCATAGGCTTCCATCAGATTCTCCTGAAAGGGAACCTAATTGTCACATTGGTGGTGTTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCACCGATTAACACTCCTAAGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGTTCTGCTCTGTTGGGTAACACAGGATTTTGAGCTTTATGCTGCATTTGATCCCCTTGCAGACAAGGCCTTGGCAATAAAGACGTGCAATCGGGTGTGTCAGTGGGTAAAAGATGTGGAAAATGAAATATTTTTGCTGGGAGCTAGCCCCTTTTCATGGTGA

>Glyma.13g325700.2 sequence-type=CDS polypeptide=Glyma.13g325700.2.p locus=Glyma.13g325700 ID=Glyma.13g325700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTTCAGCGGATCATGACTCCGACCCTCCCATCCGACTCGACTTGCCTCCGCTCTCACCGAGCCTCTTCGATTCCGAACCATCATCGGAGCTCCAACAACAATCCAACGGATCCGCCGCCCGACCCTCCTCCTACCCCTCCAGCCCCACTAGTAGCGGTTACGCCGCCGAAAGGGGCAGTAGCAGCACCGCCTCAAGCATCTCCCAGGTCGATGACGTCCTCCACCACGAAATTCAAGAGATCACCATCCACGATTCCCAACCTCAACCTCCCTCTCACTCCTCCTGGCTTCCCGGAAAACGACACGCCGATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTGAGTAATTCTGGCAAACCAATATATTCTAGGTATGGAGACGAACACAAGCTTGCTGGTTTTTCAGCAACTTTGCAAGCAATCATTTCCTTTGTGGAGAATGGGGGTGACCATGTCAAATTAGTGAGGGCTGGAAAGCATCAGGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTTATGGCCAGATGATTGTTATACTAACAAAGTCAGTAAACAGATGTTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGGAATCCAGCTACATTTCTTCATGCCTATACTTGTCTACCTCTTGCATATGCAACCAGGCAAGCTGCCGGTGCTATCTTGCAGGACGTTGCTGATTCTGGTGTTCTGTTTGCTATTCTGATGTGCAGACACAAGGTTATCAGTCTAGTTGGTGCTCAGAAAGCCTCTCTTCATCCAGATGATATGCTGCTCCTGGCCAACTTTGTTATGTCATCAGAATCCTTTAGGACTTCAGAAGCATTTTCTCCCGTGTGCTTGCCAAGATACAATGGTTTGGCATTTTTGTATGCTTATATCCACTTTTTTGATGATGACACATACTTGATGTTGCTGACCACTAGTTCTGATGCATTTTACCATCTTAAGGATTGCAGGATTCGTATTGAAACGGTACTTTTGAAGTCAAATGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGTGGGATGCATGTTGAGGATGTACCGCCCTTACCTAGTTCTGGATCATCTCCTCATTTGAGCCAGCATAGGCTTCCATCAGATTCTCCTGAAAGGGAACCTAATTGTCACATTGGTGGTGTTGCTGGGTTGTGGCATTTCATATATCGCAGCATTTATCTGGATCAATATATATCTTCAGAGTTCTCATCACCGATTAACACTCCTAAGCAGCAGAAAAGACTGTATAGAGCTTACCAGAAACTTTTTGCATCCATGCATGATAAAGGAATTGGGCCACACAAAACCCAGTTTAGAAGGGATGAAAACTACGGTAACAAATATTGTGATTCTTGTTTTGTAGTTATAATACATCCAAGAGATTGA

Predicted protein sequences of Glyma.13g325700

Limit To All Plant Sequences

>Glyma.13g325700.1.p sequence-type=predicted peptide transcript=Glyma.13g325700.1 locus=Glyma.13g325700 ID=Glyma.13g325700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSADHDSDPPIRLDLPPLSPSLFDSEPSSELQQQSNGSAARPSSYPSSPTSSGYAAERGSSSTASSISQVDDVLHHEIQEITIHDSQPQPPSHSSWLPGKRHADEDDASISWRKRKKHFFVLSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDHVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYESLRGQLELIYGQMIVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADSGVLFAILMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRTSEAFSPVCLPRYNGLAFLYAYIHFFDDDTYLMLLTTSSDAFYHLKDCRIRIETVLLKSNVLSEVQRSLLDGGMHVEDVPPLPSSGSSPHLSQHRLPSDSPEREPNCHIGGVAGLWHFIYRSIYLDQYISSEFSSPINTPKQQKRLYRAYQKLFASMHDKGIGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKALAIKTCNRVCQWVKDVENEIFLLGASPFSW*

>Glyma.13g325700.2.p sequence-type=predicted peptide transcript=Glyma.13g325700.2 locus=Glyma.13g325700 ID=Glyma.13g325700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSADHDSDPPIRLDLPPLSPSLFDSEPSSELQQQSNGSAARPSSYPSSPTSSGYAAERGSSSTASSISQVDDVLHHEIQEITIHDSQPQPPSHSSWLPGKRHADEDDASISWRKRKKHFFVLSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDHVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYESLRGQLELIYGQMIVILTKSVNRCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCLPLAYATRQAAGAILQDVADSGVLFAILMCRHKVISLVGAQKASLHPDDMLLLANFVMSSESFRTSEAFSPVCLPRYNGLAFLYAYIHFFDDDTYLMLLTTSSDAFYHLKDCRIRIETVLLKSNVLSEVQRSLLDGGMHVEDVPPLPSSGSSPHLSQHRLPSDSPEREPNCHIGGVAGLWHFIYRSIYLDQYISSEFSSPINTPKQQKRLYRAYQKLFASMHDKGIGPHKTQFRRDENYGNKYCDSCFVVIIHPRD*

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