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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G03340.1 | AT | ATPase, AAA-type, CDC48 protein | JGI | N/A | IEA |
| GO:0006281 | GO-bp | DNA repair | JGI | N/A | IEA |
| GO:0006310 | GO-bp | DNA recombination | JGI | N/A | IEA |
| GO:0007049 | GO-bp | cell cycle | EnsemblGenomes | N/A | IEA |
| GO:0005886 | GO-cc | plasma membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0000166 | GO-mf | nucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | EnsemblGenomes | N/A | IEA |
| GO:0005524 | GO-mf | ATP binding | JGI | N/A | IEA |
| GO:0009378 | GO-mf | four-way junction helicase activity | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016887 | GO-mf | ATPase activity | JGI | N/A | IEA |
| KOG0730 | KOG | AAA+-type ATPase | JGI | N/A | IEA |
| PTHR23077 | Panther | AAA-FAMILY ATPASE | JGI | N/A | IEA |
| PTHR23077:SF18 | Panther | JGI | N/A | IEA | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | N/A | IEA |
| PF02359 | PFAM | Cell division protein 48 (CDC48), N-terminal domain | JGI | N/A | IEA |
| PF02933 | PFAM | Cell division protein 48 (CDC48), domain 2 | JGI | N/A | IEA |
| GN7V-61751 | SoyCyc9-rxn | Vesicle-fusing ATPase | Plant Metabolic Network | ISS |
| Locus | Gene Symbol | Protein Name |
|---|---|---|
| CDC48 | plamsma membrane-associated AAA-ATPase |
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Glyma.13g323600 not represented in the dataset |
Glyma.13g323600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g177100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g39830 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g323600.1 sequence-type=CDS polypeptide=Glyma.13g323600.1.p locus=Glyma.13g323600 ID=Glyma.13g323600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTCAGCAAGGCGAATCATCGGACCCGAAATCGGGGAAGAAGGACTTCTCAACCGCGATTCTGGAACGCAAAAAGTCGCCGAACCGGCTTGTCGTGGATGAGGCTGTCAACGACGACAACTCCGTGGTCACCATGCATCCCCAAACCATGGAAAAGCTTCAGCTTTTCCGAGGGGACACTATCCTCATCAAGGGTAAGAAACGGAAGGATACCATTTGCATAGCTCTTGCTGATGAGAACTGTGAGGAGCCGAAGATCAGGATGAATAAAGTTGTGAGGTCAAATTTGCGGGTTCGGCTTGGAGATGTTGTGTCTGTGCACCAGTGCCCGGATGTTAAATATGGGAAACGTGTGCACATTCTGCCTATTGATGATACCATTGAAGGTGTCACTGGCAATCTGTTTGATGCTTTCTTGAAACCCTATTTCTTGGAAGCTTACCGTCCTGTCAGAAAAGGAGATCTATTTCTTGTCCGGGGAGGGATGAGAAGTGTAGAGTTCAAGGTGGTTGAAACCGATCCTGGAGAATATTGTGTTGTTGCTCCAGACACTGAAATTTTCTGTGAGGGGGAGCCTTTGAAAAGAGAAGATGAAGAGAGACTGGATGAAGTCGGGTATGATGATGTGGGTGGTGTCAGGAAACAAATGGCTCAGATTCGTGAGTTGGTTGAGCTTCCATTGAGGCATCCACAGCTTTTTAAATCAATTGGTGTGAAACCACCCAAAGGAATTTTACTTTATGGACCCCCAGGTTCTGGGAAGACATTAATAGCAAGAGCTGTAGCTAATGAAACTGGAGCTTTTTTCTTTTGTATTAACGGACCAGAGATTATGTCCAAACTTGCTGGAGAGAGTGAAAGCAATCTCAGGAAAGCGTTTGAAGAAGCAGAAAAGAATGCACCATCCATTATCTTCATTGATGAAATTGATTCCATTGCCCCCAAGCGGGAGAAGACACATGGTGAAGTTGAAAGGAGGATTGTTTCACAACTTTTGACTCTTATGGATGGATTAAAATCTCGTGCTCATGTTATTGTTATTGGAGCTACTAATCGTCCAAATAGCATTGACCCAGCATTGAGAAGGTTTGGTAGATTTGATAGGGAAATTGATATTGGTGTTCCCGATGAAGTTGGGAGACTTGAAGTCCTTCGCATACATACTAAAAACATGAAGCTATCTGATGATGTTGATTTAGAGAGAATTGCAAAAGATACTCATGGGTATGTTGGTGCTGACCTTGCTGCCCTTTGCACTGAAGCTGCTTTGCAATGCATTAGGGAGAAGATGGATGTAATTGACTTGGAGGATGAGACTATTGATGCAGAAGTACTGAATTCCATGGCAGTTACAAATGAGCATTTCCAGACTGCCCTTGGAACAAGCAACCCATCAGCTTTACGTGAAACTGTTGTTGAAGTGCCTAATGTCAGCTGGGAAGACATTGGAGGCCTTGAAAATGTCAAGCGTGAACTGCAAGAGACTGTACAATATCCAGTTGAGCACCCAGAAAAGTTTGAGAAGTTTGGTATGTCTCCATCTAAAGGAGTACTTTTCTATGGTCCTCCAGGATGTGGGAAAACTTTGTTAGCCAAAGCAATTGCTAATGAATGTCAAGCTAACTTCATCAGTGTGAAAGGTCCAGAATTGCTTACAATGTGGTTTGGTGAAAGTGAAGCTAATGTTAGAGAAATTTTTGACAAGGCCAGACAATCGGCTCCATGTGTCCTCTTCTTTGATGAGCTTGACTCTATTGCCACTCAGAGAGGAAGCAGTGTTGGGGATGCTGGTGGTGCGGCTGATAGAGTTCTAAATCAACTTTTGACTGAAATGGATGGCATGTCTGCCAAAAAGACTGTGTTCATAATTGGGGCAACTAACAGACCTGACATCATTGACCCAGCACTTCTTCGACCAGGCCGTCTGGATCAATTGATCTATATTCCTCTCCCTGATGAGGATTCCCGGCATCAAATCTTTAAAGCCTGCTTGAGGAAGTCACCTATCGCAAAAAATGTTGATTTGAGAGCATTGGCTAGGCACACTCAAGGGTTCAGTGGTGCTGATATTACAGAAATATGCCAGCGAGCATGCAAATATGCCATAAGAGAAAACATAGAGAAGGACATTGAGCGAGAGAGGAAGAGTAGGGAAAACCCTGAGGCCATGGATGAAGATACCGTCGACGACGAAGTTGCGGAGATCAAGGCTGCTCATTTTGAGGAGTCAATGAAGTTTGCACGGAGGAGTGTTAGTGATGCTGATATTCGCAAGTATCAGGCATTTGCTCAGACCTTACAGCAATCAAGAGGGTTTGGAAGTGAATTTAGGTTTCCAGAGTCTGGAGATAGGACTACTACTGGATCTGACCCCTTTGCAGCTTCTGCTGGTGGGGCTGACGAAGATGATCTATATAGTTAG
>Glyma.13g323600.1.p sequence-type=predicted peptide transcript=Glyma.13g323600.1 locus=Glyma.13g323600 ID=Glyma.13g323600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSQQGESSDPKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVTMHPQTMEKLQLFRGDTILIKGKKRKDTICIALADENCEEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVVETDPGEYCVVAPDTEIFCEGEPLKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALARHTQGFSGADITEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFPESGDRTTTGSDPFAASAGGADEDDLYS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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