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Report for Sequence Feature Glyma.13g323000

Feature Type:gene_model
Chromosome:Gm13
Start:41740800
stop:41746265
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g323000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G05160.1AT AMP-dependent synthetase and ligase family protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0016874GO-mf ligase activity EnsemblGenomesN/AIEA
KOG1176 KOG Acyl-CoA synthetase JGI N/AIEA
PTHR24096Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24096:SF43Panther JGI N/AIEA
PF00501PFAM AMP-binding enzyme JGI N/AIEA
PWY-361SoyCyc9 phenylpropanoid biosynthesis Plant Metabolic Network ISS
PWY-5754SoyCyc9 4-hydroxybenzoate biosynthesis I (eukaryotes) Plant Metabolic Network ISS
PWY-6320SoyCyc9 phaselate biosynthesis Plant Metabolic Network ISS
PWY-6982SoyCyc9 umbelliferone biosynthesis Plant Metabolic Network ISS
PWY1F-FLAVSYNSoyCyc9 flavonoid biosynthesis Plant Metabolic Network ISS
GN7V-44586SoyCyc9-rxn 4-coumarate-CoA ligase Plant Metabolic Network ISS

Proteins Associated with Glyma.13g323000
LocusGene SymbolProtein Name
4CL 4-coumarate--CoA ligase-like 7-like

Expression Patterns of Glyma.13g323000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g323000 not represented in the dataset
Glyma.13g323000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g323000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g39770 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g323000
>Glyma.13g323000.2 sequence-type=transcript locus=Glyma.13g323000 ID=Glyma.13g323000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGAGAAGAAAACAAAAACATGATTTTTTGCGCCTTGGTCCGCAATGTATCGATGATGTTGTGTCCCCATCACAAGTTGATTGTCAGAATAAAAACATTAAATTCATCCAACATTGGGAAGAAGAAATAACTGAGCAGCAAAGAAAGCGAGTAATCTTTTCCGTGAGATCGGTGTGTGAATTGTATATTCCCATTTCAATGCAGAGATCCGGTTATGGGTCCGACGGAATATACAGGTCACTCAGACCTTCCATCGTTTTTCCCAAAAACTCAAACCTCTCACTCGTTTCCCATCTTTTCAACAGAGTCGCAGCCTTTCCATCAAAACCAGCTCTTATCGATGCAGACTCTTCAGAAACACTTTCTTTCGCGGAACTCAAATTGCTAACTGTTAGGGTCGCTCACGGCCTCCTTCGTCTCGGAGTGACCAAAAACGACGTCGTTCTCTTCCTCGCTCCCAACGACATCCGCTACATCGTCTGCTTCCTCGCCGTCGCCTCTCTCGGCGCTGCCGTCACCACCGTCAACCCCGCCTACACCGCCGCCGAAGTCTCCAAACAGGCCAACGACTCCAAACCCAAACTTTTGGTAACCGTCGCCGAATTGTGGGACAAACTCGAACACCTCAAACTCCCCGCGGTCTTCCTACGTTGTTCCAACGCTCCCCACGCGCCATCCAGCGCGACTAGCTTCGACGCGCTGGTTCAACTCGCCGGGTCGGTGACCGAGTTTCCCGAAATTAAAATTAAACAGAGTGACACTGCGGCACTGTTGTATTCTTCGGGTACCACCGGCTTGAGCAAGGGCGTGGTTCTCACGCACGGGAACTTCGTCGCGGCGTCGTTGATGATTGGCTTCGACGATGATTTGGCAGGGGTGTTGCATAGCGTGTTCCTCTGCGTTTTGCCTATGTTTCATGTTTTTGGTTTGATGGTCATTTCGTACGGACAGCTTCAGAGGGGTAGTGCGGTTGTGTCTCTCAAGAAGTTTGAGTTTGAATTGGTTCTGAAGACCATTGAGAAGTTTAAGGTGACGCATTTGTGGGTTGTGCCTCCGATTATTCTTGCTCTCGCGAAACACGGTTTGGTTGATAAGTATGATCTTTCGTCTCTCAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGTTGATGAAGGAGTGTGCTAAACGTTTTCCTCATGCCATTGTTTCTCAGGGATATGGTATGACTGAAACTTGTGGAATTGTTTCTGTGGAGAATGCAAGGATGGGAATTCGGAATAGTGGCTCTACGGGAATGCTTGTCGCCGGAATGGAGGCTCAAGTAGTTAGTGTGGATACTCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGCCCTAATATGATGCAAGGTTATCACAACAATCCACAAGCCACAAGATTGACTATGGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTTTTTGTTGTTGACCGAATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTATGAAATCCAACTGCCATTTCAAGAGTGAATGACAATTTGTCGGGCATGTCATAAATGCATGCATGGTCACATGTCTGAATTCTCAATCAAATTTTTGAAAGATAATCTGGTACTTTGGTGCATTAAATATATCTTAAACCCCAAATTGTATTAGAAAGTCAAGTTTATTAACTTCGGTGCATAATGCTTTTGCTTCTCTGCATTGTTTATTTACGTGTGTTTATAACCTTCCAGTTATTCTTGGTGATGAACATTTTTGGCGAAGGATTTTCACCGTACTGAATTATTTTCTGTTTCCCTCATTGTTCCAACTAGGTTGCGCCGGCAGAACTTGAAGGGCTTCTGGTTTCTCATGCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTCGTTCGTTCACCCAATAGTTCACTCACAGAGGAAGATGTTCAAAAATTTATTGCTAAGCAGGTAGCGCCTTTCAAAAGAATAAGAAGAGTGACATTCATCAATGCTGTTCCTAAGACAGCATCAGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGATGATATCATGGTGTAATTTTTTTGTGTGTTTTCAAAACCATTTCGGGGTTTAAATTCAGAAGTAGAATGCAAGTCCAGAGCGAATCCGGAAAGGTATGATGGTTGTCATAGTGGATCAAATATGTATCTGGCTGGGAACAGTACTTACTGTTGGGTCTAGCATATTTCAATCCATTTTATAAATGGGTCAATTCATTCTAGTTCACTTAAGGTTGAATCTTTAAAAAAATGGTCTGATGTGACCTACCATGGATTGGTGAGATAAACAGGTTGACCCATCAATTTACCTAGAATTATTTTTTTACTTAAAAAAATTCAACAAAAAGTTAATTTTT
Coding sequences of Glyma.13g323000
>Glyma.13g323000.1 sequence-type=CDS polypeptide=Glyma.13g323000.1.p locus=Glyma.13g323000 ID=Glyma.13g323000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAGATCCGGTTATGGGTCCGACGGAATATACAGGTCACTCAGACCTTCCATCGTTTTTCCCAAAAACTCAAACCTCTCACTCGTTTCCCATCTTTTCAACAGAGTCGCAGCCTTTCCATCAAAACCAGCTCTTATCGATGCAGACTCTTCAGAAACACTTTCTTTCGCGGAACTCAAATTGCTAACTGTTAGGGTCGCTCACGGCCTCCTTCGTCTCGGAGTGACCAAAAACGACGTCGTTCTCTTCCTCGCTCCCAACGACATCCGCTACATCGTCTGCTTCCTCGCCGTCGCCTCTCTCGGCGCTGCCGTCACCACCGTCAACCCCGCCTACACCGCCGCCGAAGTCTCCAAACAGGCCAACGACTCCAAACCCAAACTTTTGGTAACCGTCGCCGAATTGTGGGACAAACTCGAACACCTCAAACTCCCCGCGGTCTTCCTACGTTGTTCCAACGCTCCCCACGCGCCATCCAGCGCGACTAGCTTCGACGCGCTGGTTCAACTCGCCGGGTCGGTGACCGAGTTTCCCGAAATTAAAATTAAACAGAGTGACACTGCGGCACTGTTGTATTCTTCGGGTACCACCGGCTTGAGCAAGGGCGTGGTTCTCACGCACGGGAACTTCGTCGCGGCGTCGTTGATGATTGGCTTCGACGATGATTTGGCAGGGGTGTTGCATAGCGTGTTCCTCTGCGTTTTGCCTATGTTTCATGTTTTTGGTTTGATGGTCATTTCGTACGGACAGCTTCAGAGGGGTAGTGCGGTTGTGTCTCTCAAGAAGTTTGAGTTTGAATTGGTTCTGAAGACCATTGAGAAGTTTAAGGTGACGCATTTGTGGGTTGTGCCTCCGATTATTCTTGCTCTCGCGAAACACGGTTTGGTTGATAAGTATGATCTTTCGTCTCTCAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGTTGATGAAGGAGTGTGCTAAACGTTTTCCTCATGCCATTGTTTCTCAGGGATATGGTATGACTGAAACTTGTGGAATTGTTTCTGTGGAGAATGCAAGGATGGGAATTCGGAATAGTGGCTCTACGGGAATGCTTGTCGCCGGAATGGAGGCTCAAGTAGTTAGTGTGGATACTCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGCCCTAATATGATGCAAGGTTATCACAACAATCCACAAGCCACAAGATTGACTATGGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTTTTTGTTGTTGACCGAATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTTGCGCCGGCAGAACTTGAAGGGCTTCTGGTTTCTCATGCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGTGAGGTTCCAGTTGCCTATGTCGTTCGTTCACCCAATAGTTCACTCACAGAGGAAGATGTTCAAAAATTTATTGCTAAGCAGGTAGCGCCTTTCAAAAGAATAAGAAGAGTGACATTCATCAATGCTGTTCCTAAGACAGCATCAGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA

>Glyma.13g323000.2 sequence-type=CDS polypeptide=Glyma.13g323000.2.p locus=Glyma.13g323000 ID=Glyma.13g323000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGAGATCCGGTTATGGGTCCGACGGAATATACAGGTCACTCAGACCTTCCATCGTTTTTCCCAAAAACTCAAACCTCTCACTCGTTTCCCATCTTTTCAACAGAGTCGCAGCCTTTCCATCAAAACCAGCTCTTATCGATGCAGACTCTTCAGAAACACTTTCTTTCGCGGAACTCAAATTGCTAACTGTTAGGGTCGCTCACGGCCTCCTTCGTCTCGGAGTGACCAAAAACGACGTCGTTCTCTTCCTCGCTCCCAACGACATCCGCTACATCGTCTGCTTCCTCGCCGTCGCCTCTCTCGGCGCTGCCGTCACCACCGTCAACCCCGCCTACACCGCCGCCGAAGTCTCCAAACAGGCCAACGACTCCAAACCCAAACTTTTGGTAACCGTCGCCGAATTGTGGGACAAACTCGAACACCTCAAACTCCCCGCGGTCTTCCTACGTTGTTCCAACGCTCCCCACGCGCCATCCAGCGCGACTAGCTTCGACGCGCTGGTTCAACTCGCCGGGTCGGTGACCGAGTTTCCCGAAATTAAAATTAAACAGAGTGACACTGCGGCACTGTTGTATTCTTCGGGTACCACCGGCTTGAGCAAGGGCGTGGTTCTCACGCACGGGAACTTCGTCGCGGCGTCGTTGATGATTGGCTTCGACGATGATTTGGCAGGGGTGTTGCATAGCGTGTTCCTCTGCGTTTTGCCTATGTTTCATGTTTTTGGTTTGATGGTCATTTCGTACGGACAGCTTCAGAGGGGTAGTGCGGTTGTGTCTCTCAAGAAGTTTGAGTTTGAATTGGTTCTGAAGACCATTGAGAAGTTTAAGGTGACGCATTTGTGGGTTGTGCCTCCGATTATTCTTGCTCTCGCGAAACACGGTTTGGTTGATAAGTATGATCTTTCGTCTCTCAAGCATATTGGTTCTGGCGCTGCTCCTCTTGGGAAAGAGTTGATGAAGGAGTGTGCTAAACGTTTTCCTCATGCCATTGTTTCTCAGGGATATGGTATGACTGAAACTTGTGGAATTGTTTCTGTGGAGAATGCAAGGATGGGAATTCGGAATAGTGGCTCTACGGGAATGCTTGTCGCCGGAATGGAGGCTCAAGTAGTTAGTGTGGATACTCTGAAGCCTCTCCCTCCTGGACAGTTGGGGGAGATATGGGTACGGGGCCCTAATATGATGCAAGGTTATCACAACAATCCACAAGCCACAAGATTGACTATGGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGATGAGGATGGGCAACTTTTTGTTGTTGACCGAATCAAAGAACTGATCAAGTATAAAGGTTTTCAGGTATGA
Predicted protein sequences of Glyma.13g323000
>Glyma.13g323000.1.p sequence-type=predicted peptide transcript=Glyma.13g323000.1 locus=Glyma.13g323000 ID=Glyma.13g323000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRSGYGSDGIYRSLRPSIVFPKNSNLSLVSHLFNRVAAFPSKPALIDADSSETLSFAELKLLTVRVAHGLLRLGVTKNDVVLFLAPNDIRYIVCFLAVASLGAAVTTVNPAYTAAEVSKQANDSKPKLLVTVAELWDKLEHLKLPAVFLRCSNAPHAPSSATSFDALVQLAGSVTEFPEIKIKQSDTAALLYSSGTTGLSKGVVLTHGNFVAASLMIGFDDDLAGVLHSVFLCVLPMFHVFGLMVISYGQLQRGSAVVSLKKFEFELVLKTIEKFKVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMKECAKRFPHAIVSQGYGMTETCGIVSVENARMGIRNSGSTGMLVAGMEAQVVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTMDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHAEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFIAKQVAPFKRIRRVTFINAVPKTASGKILRRELIEKVRSKI*

>Glyma.13g323000.2.p sequence-type=predicted peptide transcript=Glyma.13g323000.2 locus=Glyma.13g323000 ID=Glyma.13g323000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQRSGYGSDGIYRSLRPSIVFPKNSNLSLVSHLFNRVAAFPSKPALIDADSSETLSFAELKLLTVRVAHGLLRLGVTKNDVVLFLAPNDIRYIVCFLAVASLGAAVTTVNPAYTAAEVSKQANDSKPKLLVTVAELWDKLEHLKLPAVFLRCSNAPHAPSSATSFDALVQLAGSVTEFPEIKIKQSDTAALLYSSGTTGLSKGVVLTHGNFVAASLMIGFDDDLAGVLHSVFLCVLPMFHVFGLMVISYGQLQRGSAVVSLKKFEFELVLKTIEKFKVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMKECAKRFPHAIVSQGYGMTETCGIVSVENARMGIRNSGSTGMLVAGMEAQVVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTMDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQV*






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