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Report for Sequence Feature Glyma.13g319200

Feature Type:gene_model
Chromosome:Gm13
Start:41369865
stop:41371722
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g319200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G44735.1AT PHYTOSULFOKINE 3 PRECURSOR JGI N/AIEA
GO:0008283GO-bp cell proliferation EnsemblGenomesN/AIEA
GO:0008283GO-bp cell proliferation JGI N/AIEA
GO:0010469GO-bp regulation of signaling receptor activity EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region EnsemblGenomesN/AIEA
GO:0005576GO-cc extracellular region JGI N/AIEA
GO:0008083GO-mf growth factor activity EnsemblGenomesN/AIEA
GO:0008083GO-mf growth factor activity JGI N/AIEA
PF06404PFAM Phytosulfokine precursor protein (PSK) JGI N/AIEA

Expression Patterns of Glyma.13g319200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g319200
ParalogEvidenceComments
Glyma.12g181700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g319200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma17g05310 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g319200
>Glyma.13g319200.2 sequence-type=transcript locus=Glyma.13g319200 ID=Glyma.13g319200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTTTAATAATAGAATGGTGACTGGACCCAGTTTATAAGTGCACAAACATGAAGATAAGTCTTCACCTTGGAGCTCTCCTCTTTTTTTTGTTCTTCCTAGTTTCCTCATCAAAGCTATCTGCTAGACCACTCACCACCGAACAAGGGAGAGACAGATCAAAACTGAATGAGGTCTCAGGGGAGGACTTGGTGTTGGAGTTGGAAGGAGGTGAATCTTTGAAGCTGCTGGGGGTGGAGGACTGCAAAAGTGGAGATGAAGAATGTTTGCAGAGAAGAATGACTTTAGCAGCTCACCTAGACTACATCTACACCCAGCACCATAAGCCTTGAAATGAGAAATCTTGTCATTTTATGCTTCAAATAGTAATATCTTTTTAATTTAGCTTAGACAAATACAATTAAGCTAGGATGCCTCCCTATTGCTTTTATTTTCACTACAACACTTGGGGCTTTGCAAAAGCCTTGTTGAAGTGGTATTAATTAAGGTATCATCTGTTTGATATAAAGCAACTGCTGAACATATAATATAACAGAAGCTTATGACTTTAATTAGCCATGTTATTTGCATTGCATATGGTGATAAGTTTGAGACTTTGTCCAACACTCCAGTCTCCAACAATCAGAAATCTTGGCACAGATTCAGCTTGATCATAGTTAATTCAGATTGATTACATTGTAACTAGAGTTAGTTTAGTTAATTACTCTTGTAACCAACTATAACCAACTATATACTGTTAGATTATTTTCTTCCTCTTGTAAGTTGTTTTTGGTTGATTCACATGAGCTTTCCAAATCACCTTTTTAGTAT

>Glyma.13g319200.3 sequence-type=transcript locus=Glyma.13g319200 ID=Glyma.13g319200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GAATAACCTTCTTTTGAGAAGCTTCATGTGAGTAACAGTTACCACTTTGCTTGCATTGCACAAACATGAAGATAAGTCTTCACCTTGGAGCTCTCCTCTTTTTTTTGTTCTTCCTAGTTTCCTCATCAAAGCTATCTGCTAGACCACTCACCACCGAACAAGGGAGAGACAGATCAAAACTGAATGAGGTCTCAGGGGAGGACTTGGTGTTGGAGTTGGAAGGAGGTGAATCTTTGAAGCTGCTGGGGGTGGAGGACTGCAAAAGTGGAGATGAAGAATGTTTGCAGAGAAGAATGACTTTAGCAGCTCACCTAGACTACATCTACACCCAGCACCATAAGCCTTGAAATGAGAAATCTTGTCATTTTATGCTTCAAATAGTAATATCTTTTTAATTTAGCTTAGACAAATACAATTAAGCTAGGATGCCTCCCTATTGCTTTTATTTTCACTACAACACTTGGGGCTTTGCAAAAGCCTTGTTGAAGTGGTATTAATTAAGGTATCATCTGTTTGATATAAAGCAACTGCTGAACATATAATATAACAGAAGCTTATGACTTTAATTAGCCATGTTATTTGCATTGCATATGGTGATAAGTTTGAGACTTTGTCCAACACTCCAGTCTCCAACAATCAGAAATCTTGGCACAGATTCAGCTTGATCATAGTTAATTCAGATTGATTACATTGTAACTAGAGTTAGTTTAGTTAATTACTCTTGTAACCAACTATAACCAACTATATACTGTTAGATTATTT
Coding sequences of Glyma.13g319200
>Glyma.13g319200.1 sequence-type=CDS polypeptide=Glyma.13g319200.1.p locus=Glyma.13g319200 ID=Glyma.13g319200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATAAGTCTTCACCTTGGAGCTCTCCTCTTTTTTTTGTTCTTCCTAGTTTCCTCATCAAAGCTATCTGCTAGACCACTCACCACCGAACAAGGGAGAGACAGATCAAAACTGAATGAGGTCTCAGGGGAGGACTTGGTGTTGGAGTTGGAAGGAGGTGAATCTTTGAAGCTGCTGGGGGTGGAGGACTGCAAAAGTGGAGATGAAGAATGTTTGCAGAGAAGAATGACTTTAGCAGCTCACCTAGACTACATCTACACCCAGCACCATAAGCCTTGA

>Glyma.13g319200.2 sequence-type=CDS polypeptide=Glyma.13g319200.2.p locus=Glyma.13g319200 ID=Glyma.13g319200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATAAGTCTTCACCTTGGAGCTCTCCTCTTTTTTTTGTTCTTCCTAGTTTCCTCATCAAAGCTATCTGCTAGACCACTCACCACCGAACAAGGGAGAGACAGATCAAAACTGAATGAGGTCTCAGGGGAGGACTTGGTGTTGGAGTTGGAAGGAGGTGAATCTTTGAAGCTGCTGGGGGTGGAGGACTGCAAAAGTGGAGATGAAGAATGTTTGCAGAGAAGAATGACTTTAGCAGCTCACCTAGACTACATCTACACCCAGCACCATAAGCCTTGA

>Glyma.13g319200.3 sequence-type=CDS polypeptide=Glyma.13g319200.3.p locus=Glyma.13g319200 ID=Glyma.13g319200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATAAGTCTTCACCTTGGAGCTCTCCTCTTTTTTTTGTTCTTCCTAGTTTCCTCATCAAAGCTATCTGCTAGACCACTCACCACCGAACAAGGGAGAGACAGATCAAAACTGAATGAGGTCTCAGGGGAGGACTTGGTGTTGGAGTTGGAAGGAGGTGAATCTTTGAAGCTGCTGGGGGTGGAGGACTGCAAAAGTGGAGATGAAGAATGTTTGCAGAGAAGAATGACTTTAGCAGCTCACCTAGACTACATCTACACCCAGCACCATAAGCCTTGA
Predicted protein sequences of Glyma.13g319200
>Glyma.13g319200.1.p sequence-type=predicted peptide transcript=Glyma.13g319200.1 locus=Glyma.13g319200 ID=Glyma.13g319200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKISLHLGALLFFLFFLVSSSKLSARPLTTEQGRDRSKLNEVSGEDLVLELEGGESLKLLGVEDCKSGDEECLQRRMTLAAHLDYIYTQHHKP*

>Glyma.13g319200.2.p sequence-type=predicted peptide transcript=Glyma.13g319200.2 locus=Glyma.13g319200 ID=Glyma.13g319200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKISLHLGALLFFLFFLVSSSKLSARPLTTEQGRDRSKLNEVSGEDLVLELEGGESLKLLGVEDCKSGDEECLQRRMTLAAHLDYIYTQHHKP*

>Glyma.13g319200.3.p sequence-type=predicted peptide transcript=Glyma.13g319200.3 locus=Glyma.13g319200 ID=Glyma.13g319200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKISLHLGALLFFLFFLVSSSKLSARPLTTEQGRDRSKLNEVSGEDLVLELEGGESLKLLGVEDCKSGDEECLQRRMTLAAHLDYIYTQHHKP*






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