Glyma.13g318300

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Report for Sequence Feature Glyma.13g318300

Feature Type:	gene_model
Chromosome:	Gm13
Start:	41269055
stop:	41274970
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g318300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G44600.1	AT	cyclophilin71	JGI	N/A	IEA
GO:0000413	GO-bp	protein peptidyl-prolyl isomerization	EnsemblGenomes	N/A	IEA
GO:0006457	GO-bp	protein folding	EnsemblGenomes	N/A	IEA
GO:0006457	GO-bp	protein folding	JGI	N/A	IEA
GO:0003755	GO-mf	peptidyl-prolyl cis-trans isomerase activity	EnsemblGenomes	N/A	IEA
GO:0003755	GO-mf	peptidyl-prolyl cis-trans isomerase activity	JGI	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	JGI	N/A	IEA
GO:0016853	GO-mf	isomerase activity	EnsemblGenomes	N/A	IEA
KOG0882	KOG	Cyclophilin-related peptidyl-prolyl cis-trans isomerase	JGI	N/A	IEA
PTHR11071	Panther	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	JGI	N/A	IEA
PTHR11071:SF40	Panther		JGI	N/A	IEA
PF00160	PFAM	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	JGI	N/A	IEA
PF00400	PFAM	WD domain, G-beta repeat	JGI	N/A	IEA

Proteins Associated with Glyma.13g318300

Locus	Gene Symbol	Protein Name
	CYP20	peptidyl-prolyl cis-trans isomerase CYP20

Expression Patterns of Glyma.13g318300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g318300

Paralog	Evidence	Comments
Glyma.12g182700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g318300 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g39500	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g318300

Limit To All Plant Sequences

>Glyma.13g318300.2 sequence-type=transcript locus=Glyma.13g318300 ID=Glyma.13g318300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATCCTAATAAACCCTAAAAAGTTTCCGTGAGTACTTTCTTTCGACACTCTTTTAGTCTACTGCTAGCTCTTCAAAATCTCAGAAGAGGAAGCTTCTGCTCCCTCCATTTCCCAACTCCGTGGCACTACTTTGAAACTTGTGCATTCATTTCCTTCAGCTGAGGAAGGAATTAGCGTTGCTCTTAGCCATTCAATTCAAATTGTTTTATTTGAAGATGACTGAGGAACACGAGAATGGCGCCAACGCAAGCGAGGAGGAGCAACCGATaggcccgggcccagccccacgggcccggcccaagcGACCCCTTCAGTTCGAGCACGCCTACCTCGACGTCTTGCCCTCCGCCAACATGTACGAGAAAAGTTATATGCACCGTGATGTGGTTACGCACGTCGCCGTTTCGGCTGCGGATTTTTTCATCACTGGAAGTGCCGATGGGCATTTGAAGTTTTGGAAGAAAAAGCCTATTGGTATTGAGTTTGCCAAACACTTCAGATCTCATCTTGGTCCAATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGACCGCTCTGTGAAAATATATGACGTAGTCAACTTTGACATGATGGTCATGATTCGCTTGCCATATATTCCTGGTGCTGTTGACTGGGTTTACAAACAAGGGGATGTCAAAGCTAGGCTTGCCATTAGTGATAGGAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGATCCCATCATCTCTAAAGAGATACATATGGGTCCTATTAAAGTTATGAAGTACAATCCTGTATGTGATTCTGTACTTTCAGCAGATGCAAAGGGGATAATTGAATACTGGAGCCCTGCTACACTGCAATTCCCAGAGAATGAGGTCAATTTTAAATTGAAAAGTGACACTAACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCAGCTATTGAGGTTAGTCCTGATGGTAAGCAATTTTCTATCACATCACCTGACCGTAGAATACGTGTGTTTTGGTACAGAACGGGTAAACTAAGGCGGGTTTATGATGAATCCCTTGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATACAGGTTGGAAGCCATTGATTTTGGTCGAAGAATGGCTGTCGAGAAGGAAATAGAGAAGACAGAAAGTGCACCACTTCCAAATGCAGTTTTTGACGAAAGTGCCAATTTTCTTATATATGCAACCTTGCTTGGGATTAAAATTGTTAATCTGCACACCAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGGGATCGAAATAGTAAAAAAGTAAGAAAGATCCCTTCAGCGGCTGCAAATGCTAATGAGAGCAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTCAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAGCCAGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAGCCACCTGCTGATGAACTTTTGTCAGTTTCGGATATTGGAAAGTCAGTTACAACATCACTTCCTGATAATGTGATTCTACACACCACTATGGGTGACATTCACATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAATTTCACTACTCACTGCCGAAATGGCTACTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGATGGCACTGGTGGGCAGTCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGGTAATGAAGTTTTTTTACAAACGTTCTATGTTATTAATTATTATATGCAAAAAATATCACAATATCAGACTCCTGGCTAATGATTATTTGGGGGATATGCCGATGGCTTGTGGAAACTTCCTGGTCTGATTTTGCCTCAGATGGAATTTAGAGCAAATGCTTTTTTCTCTCTTGCAGTTTGAGGCATGATAGGCCTTTCACGGTATCAATGGCAAATGCGGGCCCAAATACAAATGGTTCTCAGTTCTTTATCACCACAGTTGCTACTCCATGGTTGGACAACAAGCACACTGTATTTGGTAGAGTTGCGAAGGGAATGGATGTTGTACAGGCTATAGAAAAAGTGAAGACAGACAAGACAGATAAGCCATATCAAGATGTTAAAATTCTAAATGTCACTGTACCAAAGTCTTGAAGGTCCTTGGTCTGTATGGCTGATGGAGTCAGTCATATCAATACTGATGATACGCTGCTGAAGAAGTTTCAAACAGAATGATTTCAAGTTTCATCCTTTAGCTTGATAGGCGGCCTATGAACTGAGGCAATTATTCTTAAAAAGGATTGCCGTTGTTTTTCATGCATACACTTTCGTCACAGTTCAATCTTTATCCGACTTATGGCTCAAGCTTACCTCGGATGTTGGCTTCTGTGTTCTGCTTTGCCAGTGTAATGAGCTTTGCATGCCAAAGGAAGGCAGTTAGGCAATATCACTTGACATGTAATTTTTTCTGATACTATACCAGATGTACGATATCCCTGACTTATTATCACTATTTTTAAAAGTGGTATAAAATGGTTTTGCCGAAAAGTAGATTTCTAAAACTTTTCGAGTTTTATGGTTTGTCAGTTTTTTAATTGCTACAAGCATGCAACCTTCTATGTTTTGTGCTTGTTGGAATTGAAG

Coding sequences of Glyma.13g318300

Limit To All Plant Sequences

>Glyma.13g318300.1 sequence-type=CDS polypeptide=Glyma.13g318300.1.p locus=Glyma.13g318300 ID=Glyma.13g318300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTGAGGAACACGAGAATGGCGCCAACGCAAGCGAGGAGGAGCAACCGATAGGCCCGGGCCCAGCCCCACGGGCCCGGCCCAAGCGACCCCTTCAGTTCGAGCACGCCTACCTCGACGTCTTGCCCTCCGCCAACATGTACGAGAAAAGTTATATGCACCGTGATGTGGTTACGCACGTCGCCGTTTCGGCTGCGGATTTTTTCATCACTGGAAGTGCCGATGGGCATTTGAAGTTTTGGAAGAAAAAGCCTATTGGTATTGAGTTTGCCAAACACTTCAGATCTCATCTTGGTCCAATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGACCGCTCTGTGAAAATATATGACGTAGTCAACTTTGACATGATGGTCATGATTCGCTTGCCATATATTCCTGGTGCTGTTGACTGGGTTTACAAACAAGGGGATGTCAAAGCTAGGCTTGCCATTAGTGATAGGAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGATCCCATCATCTCTAAAGAGATACATATGGGTCCTATTAAAGTTATGAAGTACAATCCTGTATGTGATTCTGTACTTTCAGCAGATGCAAAGGGGATAATTGAATACTGGAGCCCTGCTACACTGCAATTCCCAGAGAATGAGGTCAATTTTAAATTGAAAAGTGACACTAACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCAGCTATTGAGGTTAGTCCTGATGGTAAGCAATTTTCTATCACATCACCTGACCGTAGAATACGTGTGTTTTGGTACAGAACGGGTAAACTAAGGCGGGTTTATGATGAATCCCTTGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATACAGGTTGGAAGCCATTGATTTTGGTCGAAGAATGGCTGTCGAGAAGGAAATAGAGAAGACAGAAAGTGCACCACTTCCAAATGCAGTTTTTGACGAAAGTGCCAATTTTCTTATATATGCAACCTTGCTTGGGATTAAAATTGTTAATCTGCACACCAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGGGATCGAAATAGTAAAAAAGTAAGAAAGATCCCTTCAGCGGCTGCAAATGCTAATGAGAGCAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTCAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAGCCAGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAGCCACCTGCTGATGAACTTTTGTCAGTTTCGGATATTGGAAAGTCAGTTACAACATCACTTCCTGATAATGTGATTCTACACACCACTATGGGTGACATTCACATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAATTTCACTACTCACTGCCGAAATGGCTACTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGATGGCACTGGTGGGCAGTCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGTTTGAGGCATGATAGGCCTTTCACGGTATCAATGGCAAATGCGGGCCCAAATACAAATGGTTCTCAGTTCTTTATCACCACAGTTGCTACTCCATGGTTGGACAACAAGCACACTGTATTTGGTAGAGTTGCGAAGGGAATGGATGTTGTACAGGCTATAGAAAAAGTGAAGACAGACAAGACAGATAAGCCATATCAAGATGTTAAAATTCTAAATGTCACTGTACCAAAGTCTTGA

>Glyma.13g318300.2 sequence-type=CDS polypeptide=Glyma.13g318300.2.p locus=Glyma.13g318300 ID=Glyma.13g318300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTGAGGAACACGAGAATGGCGCCAACGCAAGCGAGGAGGAGCAACCGATAGGCCCGGGCCCAGCCCCACGGGCCCGGCCCAAGCGACCCCTTCAGTTCGAGCACGCCTACCTCGACGTCTTGCCCTCCGCCAACATGTACGAGAAAAGTTATATGCACCGTGATGTGGTTACGCACGTCGCCGTTTCGGCTGCGGATTTTTTCATCACTGGAAGTGCCGATGGGCATTTGAAGTTTTGGAAGAAAAAGCCTATTGGTATTGAGTTTGCCAAACACTTCAGATCTCATCTTGGTCCAATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGACCGCTCTGTGAAAATATATGACGTAGTCAACTTTGACATGATGGTCATGATTCGCTTGCCATATATTCCTGGTGCTGTTGACTGGGTTTACAAACAAGGGGATGTCAAAGCTAGGCTTGCCATTAGTGATAGGAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGATCCCATCATCTCTAAAGAGATACATATGGGTCCTATTAAAGTTATGAAGTACAATCCTGTATGTGATTCTGTACTTTCAGCAGATGCAAAGGGGATAATTGAATACTGGAGCCCTGCTACACTGCAATTCCCAGAGAATGAGGTCAATTTTAAATTGAAAAGTGACACTAACCTCTTTGAAATTGCAAAATGCAAGACTTCTGTTTCAGCTATTGAGGTTAGTCCTGATGGTAAGCAATTTTCTATCACATCACCTGACCGTAGAATACGTGTGTTTTGGTACAGAACGGGTAAACTAAGGCGGGTTTATGATGAATCCCTTGAGGTTGCTCAAGATCTCCAAAGAAGTGATGCTCCATTATACAGGTTGGAAGCCATTGATTTTGGTCGAAGAATGGCTGTCGAGAAGGAAATAGAGAAGACAGAAAGTGCACCACTTCCAAATGCAGTTTTTGACGAAAGTGCCAATTTTCTTATATATGCAACCTTGCTTGGGATTAAAATTGTTAATCTGCACACCAATAAAGTTGCTCGAATACTTGGAAAGGTGGAGAATAATGATAGGTTCTTAAGAATAGCTTTATATCAAGGGGATCGAAATAGTAAAAAAGTAAGAAAGATCCCTTCAGCGGCTGCAAATGCTAATGAGAGCAAGGAGCCTTTGACAGATCCCACTCTCCTGTGTTGTGCCTTCAAAAAGCACAGGATATATTTATTCAGTCGAAGAGAGCCAGAGGAGCCTGAAGATGCAACTAAAGGAAGAGATGTGTTCAATGAAAAGCCACCTGCTGATGAACTTTTGTCAGTTTCGGATATTGGAAAGTCAGTTACAACATCACTTCCTGATAATGTGATTCTACACACCACTATGGGTGACATTCACATGAAATTATACCCAGAGGAATGTCCAAAAACTGTGGAGAATTTCACTACTCACTGCCGAAATGGCTACTATGACAATCTTATTTTTCATAGGGTCATCAAAGGCTTCATGATACAAACAGGAGATCCTTTAGGAGATGGCACTGGTGGGCAGTCTATTTGGGGGAGAGAATTTGAGGATGAATTTCATAAAAGGTAA

Predicted protein sequences of Glyma.13g318300

Limit To All Plant Sequences

>Glyma.13g318300.1.p sequence-type=predicted peptide transcript=Glyma.13g318300.1 locus=Glyma.13g318300 ID=Glyma.13g318300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTEEHENGANASEEEQPIGPGPAPRARPKRPLQFEHAYLDVLPSANMYEKSYMHRDVVTHVAVSAADFFITGSADGHLKFWKKKPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDRSVKIYDVVNFDMMVMIRLPYIPGAVDWVYKQGDVKARLAISDRNSSFVHIYDARAGSNDPIISKEIHMGPIKVMKYNPVCDSVLSADAKGIIEYWSPATLQFPENEVNFKLKSDTNLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWYRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESANFLIYATLLGIKIVNLHTNKVARILGKVENNDRFLRIALYQGDRNSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLSVSDIGKSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVAKGMDVVQAIEKVKTDKTDKPYQDVKILNVTVPKS*

>Glyma.13g318300.2.p sequence-type=predicted peptide transcript=Glyma.13g318300.2 locus=Glyma.13g318300 ID=Glyma.13g318300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTEEHENGANASEEEQPIGPGPAPRARPKRPLQFEHAYLDVLPSANMYEKSYMHRDVVTHVAVSAADFFITGSADGHLKFWKKKPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDRSVKIYDVVNFDMMVMIRLPYIPGAVDWVYKQGDVKARLAISDRNSSFVHIYDARAGSNDPIISKEIHMGPIKVMKYNPVCDSVLSADAKGIIEYWSPATLQFPENEVNFKLKSDTNLFEIAKCKTSVSAIEVSPDGKQFSITSPDRRIRVFWYRTGKLRRVYDESLEVAQDLQRSDAPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESANFLIYATLLGIKIVNLHTNKVARILGKVENNDRFLRIALYQGDRNSKKVRKIPSAAANANESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLSVSDIGKSVTTSLPDNVILHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKR*

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