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Report for Sequence Feature Glyma.13g316100

Feature Type:gene_model
Chromosome:Gm13
Start:41088129
stop:41090704
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g316100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G27480.1AT Calcium-binding EF-hand family protein JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004198GO-mf calcium-dependent cysteine-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding EnsemblGenomesN/AIEA
GO:0005509GO-mf calcium ion binding JGI N/AIEA
KOG0037 KOG Ca2+-binding protein, EF-Hand protein superfamily JGI N/AIEA
PTHR10183Panther CALPAIN JGI N/AIEA
PTHR10183:SF16Panther JGI N/AIEA

Expression Patterns of Glyma.13g316100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g316100
ParalogEvidenceComments
Glyma.12g185400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g316100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g39240 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g316100
>Glyma.13g316100.2 sequence-type=transcript locus=Glyma.13g316100 ID=Glyma.13g316100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTCATTACGTCAAATCAAATCCTATAATATATGTTACCAATCTCGAAACTAGAAAGTACCGTTATCTCTCTGAACGTGTTCGTGCATTCCAAGCCAAGGTTGCAACTTACTAGCTAGCTATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTGTGGGATGATTATTAAGGTAAAACTCAATGAGCTTTTGAAGCTATGGACGTGCCTCTCATTTCTCTATTTCTTCTTCAGTGATATAGGCCAATTCACCTGTTCCATTGTTTGCTTTGCTTGATATATGTGGTTCCAGACATAGATGTCTATACTCTATCCTGTTGCATATGCATTATCTTCACTATGTGATATGATATGTGTGGTGAGAAATAAACATTTGGGTGGGTGTCATATGTTCATGTTTGAATAAATTACAGCACACGTGCTTTGGAAAAGAG

>Glyma.13g316100.3 sequence-type=transcript locus=Glyma.13g316100 ID=Glyma.13g316100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTCATTACGTCAAATCAAATCCTATAATATATGTTACCAATCTCGAAACTAGAAAGTACCGTTATCTCTCTGAACGTGTTCGTGCATTCCAAGCCAAGGTTGCAACTTACTAGCTAGCTATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTAAGTTAACTTTATCTGGGTCTTTGAAGAGAGTAACTTTTTTATTTTGGTCATTGAAAGATTTTTAGATCATTTTGATTTGGTCCTCGAAATGTTATTACATCAACTTGTCCTCAAATGATGTTTTTCTTTTTTCTGCATCAAAATAGTCAAAATACTTAATGTTGTCATACTGTGATAAAATAATGATTTGGGGGCCATTTTGATGTAGCTGATGCTTGGGAGCACCAAATTGGTAGTATTCTGAAATCTTTCAAGGACTAAATTGGCTT
Coding sequences of Glyma.13g316100
>Glyma.13g316100.1 sequence-type=CDS polypeptide=Glyma.13g316100.1.p locus=Glyma.13g316100 ID=Glyma.13g316100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTGTGGGATGATTATTAAGGGTCTGACTGATAAATTCAAGGAGAAGGATACACGGTATACGGGTTCAGCTACACTTTCATACGACGCCTTTATGACTATGGTCCTTCCTTTCCTTGTATCTTATGATTGA

>Glyma.13g316100.2 sequence-type=CDS polypeptide=Glyma.13g316100.2.p locus=Glyma.13g316100 ID=Glyma.13g316100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTGTGGGATGATTATTAAGGTAAAACTCAATGAGCTTTTGAAGCTATGGACGTGCCTCTCATTTCTCTATTTCTTCTTCAGTGATATAGGCCAATTCACCTGTTCCATTGTTTGCTTTGCTTGA

>Glyma.13g316100.3 sequence-type=CDS polypeptide=Glyma.13g316100.3.p locus=Glyma.13g316100 ID=Glyma.13g316100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCTTCATACGGTGGATACCATTCTCAATCCTATGCTCCATCTGCGCCAGAACAACCTCCATATTCCAATTATAATCACACTTCTTCTTCTACATCAAATTCATCGTCATCCAGTTTTCCAGCAGGGACGCCCCAGGACGTGATTCGGAGCTTTCAGATGGTGGATAGGGACCGAAGCGGCTTCATCGATGAGCGTGAGTTGCACCAAGCTCTCTCTTCTGGATTCCACCACTTCAACTTTAGGACCATTCGTCTTCTCTTGTTCCTCTTCAAGAATCCACACCAACCCCTCACAATTGGACCAAAGGAATTTGCAGCACTCTGGAGTTGCCTTGGTCATTGGCGAGGAATATTTGAGAGGTACGATAGAGATAGGAGTGGGAAAATTGATCCATTAGAACTCAGAGATGCTCTGTATGGTATTGGCTATGCTGTACCAGGCTCGGTTCTACAACTACTGCTTTCAAAGTATGGTGATGGAAGTGGTAGGAGGGTTGAACTTGGTTTTGACAGTTTTGTCGAGTAA
Predicted protein sequences of Glyma.13g316100
>Glyma.13g316100.1.p sequence-type=predicted peptide transcript=Glyma.13g316100.1 locus=Glyma.13g316100 ID=Glyma.13g316100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSYGGYHSQSYAPSAPEQPPYSNYNHTSSSTSNSSSSSFPAGTPQDVIRSFQMVDRDRSGFIDERELHQALSSGFHHFNFRTIRLLLFLFKNPHQPLTIGPKEFAALWSCLGHWRGIFERYDRDRSGKIDPLELRDALYGIGYAVPGSVLQLLLSKYGDGSGRRVELGFDSFVECGMIIKGLTDKFKEKDTRYTGSATLSYDAFMTMVLPFLVSYD*

>Glyma.13g316100.2.p sequence-type=predicted peptide transcript=Glyma.13g316100.2 locus=Glyma.13g316100 ID=Glyma.13g316100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSYGGYHSQSYAPSAPEQPPYSNYNHTSSSTSNSSSSSFPAGTPQDVIRSFQMVDRDRSGFIDERELHQALSSGFHHFNFRTIRLLLFLFKNPHQPLTIGPKEFAALWSCLGHWRGIFERYDRDRSGKIDPLELRDALYGIGYAVPGSVLQLLLSKYGDGSGRRVELGFDSFVECGMIIKVKLNELLKLWTCLSFLYFFFSDIGQFTCSIVCFA*

>Glyma.13g316100.3.p sequence-type=predicted peptide transcript=Glyma.13g316100.3 locus=Glyma.13g316100 ID=Glyma.13g316100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSYGGYHSQSYAPSAPEQPPYSNYNHTSSSTSNSSSSSFPAGTPQDVIRSFQMVDRDRSGFIDERELHQALSSGFHHFNFRTIRLLLFLFKNPHQPLTIGPKEFAALWSCLGHWRGIFERYDRDRSGKIDPLELRDALYGIGYAVPGSVLQLLLSKYGDGSGRRVELGFDSFVE*






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