Glyma.13g311000

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Report for Sequence Feature Glyma.13g311000

Feature Type:	gene_model
Chromosome:	Gm13
Start:	40640137
stop:	40643596
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g311000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G06390.1	AT	FASCICLIN-like arabinogalactan protein 17 precursor	JGI	N/A	IEA
KOG1437	KOG	Fasciclin and related adhesion glycoproteins	JGI	N/A	IEA
PTHR10900	Panther	PERIOSTIN-RELATED	JGI	N/A	IEA
PTHR10900:SF38	Panther		JGI	N/A	IEA
PF02469	PFAM	Fasciclin domain	JGI	N/A	IEA

Expression Patterns of Glyma.13g311000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g311000

Paralog	Evidence	Comments
Glyma.12g190700	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g311000 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g38730	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g311000

Limit To All Plant Sequences

>Glyma.13g311000.2 sequence-type=transcript locus=Glyma.13g311000 ID=Glyma.13g311000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACAAATTTGCGTATAAATAATTATTCTGGTTATTTAACGACCAAACCAAAGGAAAACAAAGAAAGAAAGGCTTGCGAAGCCAACCCCACATGAAGCGTTTCTGCTCCTGCGCTGTAAGACACTACACCAAGTGGTAGTAGTAGTAACAGTGACAAAGTGAAGTTCTGCGGTTCCACTCCACCGCATTCTCGCCATGGATCGCCACAGCATCCCCGGCGTCTCCAATCTCTGCATCTTCCTCTTCCTTGTTTCTCTTTTCCCACAAGCATTAACGCTGCGGGTCTCTTCTCCGTCGTCACCGACGGGTCAGATTAACTCAAATTCAATCCTCGTGGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTCGTTGAAAAAGCCATGCTGTTACAGAAACTAGAAGACACTGTCGCCACTCACAACATAACAATCTTCGCTCCGACCAACGAAGCCTTATACCGCAACCTCGACCCCGATTTCAAGCGCTTCCTCCTCCAACCCGCCAATCTTCACTCCCTCCAGACGCTCCTCCTCTCTCACATCACCCCCGCCCTAATCGGATCCCAAACCCTAACACGCCACGTCACCACTCTCTCCGACCACAACCTCAAACTCTCCGAAAACCTCACCACCGTCGACCAAGCCAGAGTCACCCACCCGAATGTTGTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGTTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCTCCGCCGTCAAACCCGAACCTGCCCCGGAGGTCGACCCGAGAACCCACCGTCTCAAAAAACCCCCCCCACCGGCGAAACCTGGTTCTCTTCCAGAACTTCCGATCTACGACGCGATggctccgggaccctccctggccccggcgccggcgccggggccaggcggcccgcaccACCACTTCAACGGCGAAAGACAAGTGAAGGACTTCATCCACACGCTCCTCCACTACGGCGGGTACAACGAGATGGCAGACATTCTCGTAAACCTAACGTCGTTGGACGTTGAAATGGGTCGTTTAGTCTCAGAGGGTTACGTGCTCACCGTTTTGGCACCAAACGACGAAGCGATGGCGAAGTTGACGACGGAGCAGTTAAGCGAACCGGGGGCACCGGAGCAGATAATGTACTATCACATAATCCCGGAGTACCAGACCGAAGAGAGTATGTACAATGCCGTTAGAAGGTTCGGGAAGGTTCGTTACGATACCCTACGGTTGCCGCATAAGGTGGTTGCTCAAGAAGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACAGACGGGCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGGCGGCGGAGGAGGATGCGGAGCGGGTTAGACCCGTTACCCAAACGGGTCAGAACGCTACGAAGCTTGTTGTCAAGCACAGGAGAGGAAAATTGCTGGAAACAGCATGCTGGATGCTTGGAACCTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGAAGAAGCCCACGTTTTTGTTGCTAGCAAGATTTCTCAAAACAATGAAATCCAATGGATATCTCTTCGATGTAAAAAGTCAAAAGAAAAGGCCATCTTGCTTGAATGGGATGTAGCCAGCTGCTATGGGCGTGATTTTCCCACATTTTTGTTTTGCTCTTTTTTTTTTTTGTCCATTATTGTCTTTTGCGCATTTGGGTCAAAAGCTTTTCTAGTCTACTTGTCATACCATATAATGCATATATGTGCTTAGATTCAGTTACTACTTCTACTCCAATTCCATAGGTGGTTGTGTTGCTGGGAAGGAAGGTTTTCTTTAACCAAACAGGGAATCTTTCTGTTAGACATGTGCCCATTCAATAAATAATTTTACGGAAGAAATGGAAATACAACAATAAAATGATTCTTTACTGTGTATACGACATCTCT

>Glyma.13g311000.3 sequence-type=transcript locus=Glyma.13g311000 ID=Glyma.13g311000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACAAATTTGCGTATAAATAATTATTCTGGTTATTTAACGACCAAACCAAAGGAAAACAAAGAAAGAAAGGCTTGCGAAGCCAACCCCACATGAAGCGTTTCTGCTCCTGCGCTGTAAGACACTACACCAAGTGGTAGTAGTAGTAACAGTGACAAAGTGAAGTTCTGCGGTTCCACTCCACCGCATTCTCGCCATGGATCGCCACAGCATCCCCGGCGTCTCCAATCTCTGCATCTTCCTCTTCCTTGTTTCTCTTTTCCCACAAGCATTAACGCTGCGGGTCTCTTCTCCGTCGTCACCGACGGGTCAGATTAACTCAAATTCAATCCTCGTGGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTCGTTGAAAAAGCCATGCTGTTACAGAAACTAGAAGACACTGTCGCCACTCACAACATAACAATCTTCGCTCCGACCAACGAAGCCTTATACCGCAACCTCGACCCCGATTTCAAGCGCTTCCTCCTCCAACCCGCCAATCTTCACTCCCTCCAGACGCTCCTCCTCTCTCACATCACCCCCGCCCTAATCGGATCCCAAACCCTAACACGCCACGTCACCACTCTCTCCGACCACAACCTCAAACTCTCCGAAAACCTCACCACCGTCGACCAAGCCAGAGTCACCCACCCGAATGTTGTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGTTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCTCCGCCGTCAAACCCGAACCTGCCCCGGAGGTCGACCCGAGAACCCACCGTCTCAAAAAACCCCCCCCACCGGCGAAACCTGGTTCTCTTCCAGAACTTCCGATCTACGACGCGATggctccgggaccctccctggccccggcgccggcgccggggccaggcggcccgcaccACCACTTCAACGGCGAAAGACAAGTGAAGGACTTCATCCACACGCTCCTCCACTACGGCGGGTACAACGAGATGGCAGACATTCTCGTAAACCTAACGTCGTTGGACGTTGAAATGGGTCGTTTAGTCTCAGAGGGTTACGTGCTCACCGTTTTGGCACCAAACGACGAAGCGATGGCGAAGTTGACGACGGAGCAGTTAAGCGAACCGGGGGCACCGGAGCAGATAATGTACTATCACATAATCCCGGAGTACCAGACCGAAGAGAGTATGTACAATGCCGTTAGAAGGTTCGGGAAGGTTCGTTACGATACCCTACGGTTGCCGCATAAGGTGGTTGCTCAAGAAGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACAGACGGGCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGGCGGCGGAGGAGGATGCGGAGCGGGTTAGACCCGTTACCCAAACGGGTCAGAACGCTACGAAGCTTGTTGTCAAGCACAGGAGAGGAAAATTGCTGGAAACAGCATGCTGGATGCTTGGAACCTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGAAGAAGCCCACGTTTTTGTTGCTAGCAAGATTTCTCAAAACAATGAAGTGAGATTGCAACTTGTTGTTTCATTTACTAGATAACCATCTGATTAATCGGATCTCATTAGGTGATCCAATGGATATCTCTTCGATGTAAAAAGTCAAAAGAAAAGGCCATCTTGCTTGAATGGGATGTAGCCAGCTGCTATGGGCGTGATTTTCCCACATTTTTGTTTTGCTCTTTTTTTTTTTTGTCCATTATTGTCTTTTGCGCATTTGGGTCAAAAGCTTTTCTAGTCTACTTGTCATACCATATAATGCATATATGTGCTTAGATTCAGTTACTACTTCTACTCCAATTCCATAGGTGGTTGTGTTGCTGGGAAGGAAGGTTTTCTTTAACCAAACAGGGAATCTTTCTGTTAGACATGTGCCCATTCAATAAATAATTTTACGGAAGAAATGGAAATACAACAATAAAATGATTCTTTACTGTGTATA

Coding sequences of Glyma.13g311000

Limit To All Plant Sequences

>Glyma.13g311000.1 sequence-type=CDS polypeptide=Glyma.13g311000.1.p locus=Glyma.13g311000 ID=Glyma.13g311000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCGCCACAGCATCCCCGGCGTCTCCAATCTCTGCATCTTCCTCTTCCTTGTTTCTCTTTTCCCACAAGCATTAACGCTGCGGGTCTCTTCTCCGTCGTCACCGACGGGTCAGATTAACTCAAATTCAATCCTCGTGGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTCGTTGAAAAAGCCATGCTGTTACAGAAACTAGAAGACACTGTCGCCACTCACAACATAACAATCTTCGCTCCGACCAACGAAGCCTTATACCGCAACCTCGACCCCGATTTCAAGCGCTTCCTCCTCCAACCCGCCAATCTTCACTCCCTCCAGACGCTCCTCCTCTCTCACATCACCCCCGCCCTAATCGGATCCCAAACCCTAACACGCCACGTCACCACTCTCTCCGACCACAACCTCAAACTCTCCGAAAACCTCACCACCGTCGACCAAGCCAGAGTCACCCACCCGAATGTTGTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGTTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCTCCGCCGTCAAACCCGAACCTGCCCCGGAGGTCGACCCGAGAACCCACCGTCTCAAAAAACCCCCCCCACCGGCGAAACCTGGTTCTCTTCCAGAACTTCCGATCTACGACGCGATGGCTCCGGGACCCTCCCTGGCCCCGGCGCCGGCGCCGGGGCCAGGCGGCCCGCACCACCACTTCAACGGCGAAAGACAAGTGAAGGACTTCATCCACACGCTCCTCCACTACGGCGGGTACAACGAGATGGCAGACATTCTCGTAAACCTAACGTCGTTGGACGTTGAAATGGGTCGTTTAGTCTCAGAGGGTTACGTGCTCACCGTTTTGGCACCAAACGACGAAGCGATGGCGAAGTTGACGACGGAGCAGTTAAGCGAACCGGGGGCACCGGAGCAGATAATGTACTATCACATAATCCCGGAGTACCAGACCGAAGAGAGTATGTACAATGCCGTTAGAAGGTTCGGGAAGGTTCGTTACGATACCCTACGGTTGCCGCATAAGGTGGTTGCTCAAGAAGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACAGACGGGCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGGCGGCGGAGGAGGATGCGGAGCGGGTTAGACCCGTTACCCAAACGGGTCAGAACGCTACGAAGCTTGTTGTCAAGCACAGGAGAGGAAAATTGCTGGAAACAGCATGCTGGATGCTTGGAACCTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGA

>Glyma.13g311000.2 sequence-type=CDS polypeptide=Glyma.13g311000.2.p locus=Glyma.13g311000 ID=Glyma.13g311000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCGCCACAGCATCCCCGGCGTCTCCAATCTCTGCATCTTCCTCTTCCTTGTTTCTCTTTTCCCACAAGCATTAACGCTGCGGGTCTCTTCTCCGTCGTCACCGACGGGTCAGATTAACTCAAATTCAATCCTCGTGGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTCGTTGAAAAAGCCATGCTGTTACAGAAACTAGAAGACACTGTCGCCACTCACAACATAACAATCTTCGCTCCGACCAACGAAGCCTTATACCGCAACCTCGACCCCGATTTCAAGCGCTTCCTCCTCCAACCCGCCAATCTTCACTCCCTCCAGACGCTCCTCCTCTCTCACATCACCCCCGCCCTAATCGGATCCCAAACCCTAACACGCCACGTCACCACTCTCTCCGACCACAACCTCAAACTCTCCGAAAACCTCACCACCGTCGACCAAGCCAGAGTCACCCACCCGAATGTTGTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGTTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCTCCGCCGTCAAACCCGAACCTGCCCCGGAGGTCGACCCGAGAACCCACCGTCTCAAAAAACCCCCCCCACCGGCGAAACCTGGTTCTCTTCCAGAACTTCCGATCTACGACGCGATGGCTCCGGGACCCTCCCTGGCCCCGGCGCCGGCGCCGGGGCCAGGCGGCCCGCACCACCACTTCAACGGCGAAAGACAAGTGAAGGACTTCATCCACACGCTCCTCCACTACGGCGGGTACAACGAGATGGCAGACATTCTCGTAAACCTAACGTCGTTGGACGTTGAAATGGGTCGTTTAGTCTCAGAGGGTTACGTGCTCACCGTTTTGGCACCAAACGACGAAGCGATGGCGAAGTTGACGACGGAGCAGTTAAGCGAACCGGGGGCACCGGAGCAGATAATGTACTATCACATAATCCCGGAGTACCAGACCGAAGAGAGTATGTACAATGCCGTTAGAAGGTTCGGGAAGGTTCGTTACGATACCCTACGGTTGCCGCATAAGGTGGTTGCTCAAGAAGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACAGACGGGCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGGCGGCGGAGGAGGATGCGGAGCGGGTTAGACCCGTTACCCAAACGGGTCAGAACGCTACGAAGCTTGTTGTCAAGCACAGGAGAGGAAAATTGCTGGAAACAGCATGCTGGATGCTTGGAACCTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGA

>Glyma.13g311000.3 sequence-type=CDS polypeptide=Glyma.13g311000.3.p locus=Glyma.13g311000 ID=Glyma.13g311000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCGCCACAGCATCCCCGGCGTCTCCAATCTCTGCATCTTCCTCTTCCTTGTTTCTCTTTTCCCACAAGCATTAACGCTGCGGGTCTCTTCTCCGTCGTCACCGACGGGTCAGATTAACTCAAATTCAATCCTCGTGGCTCTTCTGGACTCGCATTACACGGAACTCGCGGAGCTCGTTGAAAAAGCCATGCTGTTACAGAAACTAGAAGACACTGTCGCCACTCACAACATAACAATCTTCGCTCCGACCAACGAAGCCTTATACCGCAACCTCGACCCCGATTTCAAGCGCTTCCTCCTCCAACCCGCCAATCTTCACTCCCTCCAGACGCTCCTCCTCTCTCACATCACCCCCGCCCTAATCGGATCCCAAACCCTAACACGCCACGTCACCACTCTCTCCGACCACAACCTCAAACTCTCCGAAAACCTCACCACCGTCGACCAAGCCAGAGTCACCCACCCGAATGTTGTGACCCGACCCGACGGCGTCATCCACGGCATCGACCGCCTCCTCCTCCCCCGTTCCGTCGAGGACGACTTCAACCGCCGCCGCAGCCTCCGCTCCATCTCCGCCGTCAAACCCGAACCTGCCCCGGAGGTCGACCCGAGAACCCACCGTCTCAAAAAACCCCCCCCACCGGCGAAACCTGGTTCTCTTCCAGAACTTCCGATCTACGACGCGATGGCTCCGGGACCCTCCCTGGCCCCGGCGCCGGCGCCGGGGCCAGGCGGCCCGCACCACCACTTCAACGGCGAAAGACAAGTGAAGGACTTCATCCACACGCTCCTCCACTACGGCGGGTACAACGAGATGGCAGACATTCTCGTAAACCTAACGTCGTTGGACGTTGAAATGGGTCGTTTAGTCTCAGAGGGTTACGTGCTCACCGTTTTGGCACCAAACGACGAAGCGATGGCGAAGTTGACGACGGAGCAGTTAAGCGAACCGGGGGCACCGGAGCAGATAATGTACTATCACATAATCCCGGAGTACCAGACCGAAGAGAGTATGTACAATGCCGTTAGAAGGTTCGGGAAGGTTCGTTACGATACCCTACGGTTGCCGCATAAGGTGGTTGCTCAAGAAGCTGATGGGTCCGTTAAATTCGGGCACGGGGACGGGTCGGCTTATTTGTTCGACCCGGATATTTACACAGACGGGCGGATCTCGGTTCAGGGGATTGATGGGGTTTTGTTTCCGGCGGCGGAGGAGGATGCGGAGCGGGTTAGACCCGTTACCCAAACGGGTCAGAACGCTACGAAGCTTGTTGTCAAGCACAGGAGAGGAAAATTGCTGGAAACAGCATGCTGGATGCTTGGAACCTTTGGACAGCATTCTAGATTCGCCTCTTGTCAATGA

Predicted protein sequences of Glyma.13g311000

Limit To All Plant Sequences

>Glyma.13g311000.1.p sequence-type=predicted peptide transcript=Glyma.13g311000.1 locus=Glyma.13g311000 ID=Glyma.13g311000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDRHSIPGVSNLCIFLFLVSLFPQALTLRVSSPSSPTGQINSNSILVALLDSHYTELAELVEKAMLLQKLEDTVATHNITIFAPTNEALYRNLDPDFKRFLLQPANLHSLQTLLLSHITPALIGSQTLTRHVTTLSDHNLKLSENLTTVDQARVTHPNVVTRPDGVIHGIDRLLLPRSVEDDFNRRRSLRSISAVKPEPAPEVDPRTHRLKKPPPPAKPGSLPELPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLDVEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPAAEEDAERVRPVTQTGQNATKLVVKHRRGKLLETACWMLGTFGQHSRFASCQ*

>Glyma.13g311000.2.p sequence-type=predicted peptide transcript=Glyma.13g311000.2 locus=Glyma.13g311000 ID=Glyma.13g311000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDRHSIPGVSNLCIFLFLVSLFPQALTLRVSSPSSPTGQINSNSILVALLDSHYTELAELVEKAMLLQKLEDTVATHNITIFAPTNEALYRNLDPDFKRFLLQPANLHSLQTLLLSHITPALIGSQTLTRHVTTLSDHNLKLSENLTTVDQARVTHPNVVTRPDGVIHGIDRLLLPRSVEDDFNRRRSLRSISAVKPEPAPEVDPRTHRLKKPPPPAKPGSLPELPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLDVEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPAAEEDAERVRPVTQTGQNATKLVVKHRRGKLLETACWMLGTFGQHSRFASCQ*

>Glyma.13g311000.3.p sequence-type=predicted peptide transcript=Glyma.13g311000.3 locus=Glyma.13g311000 ID=Glyma.13g311000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDRHSIPGVSNLCIFLFLVSLFPQALTLRVSSPSSPTGQINSNSILVALLDSHYTELAELVEKAMLLQKLEDTVATHNITIFAPTNEALYRNLDPDFKRFLLQPANLHSLQTLLLSHITPALIGSQTLTRHVTTLSDHNLKLSENLTTVDQARVTHPNVVTRPDGVIHGIDRLLLPRSVEDDFNRRRSLRSISAVKPEPAPEVDPRTHRLKKPPPPAKPGSLPELPIYDAMAPGPSLAPAPAPGPGGPHHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLDVEMGRLVSEGYVLTVLAPNDEAMAKLTTEQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIYTDGRISVQGIDGVLFPAAEEDAERVRPVTQTGQNATKLVVKHRRGKLLETACWMLGTFGQHSRFASCQ*

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