SoyBase
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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G32290.1 | AT | beta-amylase 6 | JGI | N/A | IEA |
| GO:0000272 | GO-bp | polysaccharide catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0000272 | GO-bp | polysaccharide catabolic process | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016161 | GO-mf | beta-amylase activity | EnsemblGenomes | N/A | IEA |
| GO:0016161 | GO-mf | beta-amylase activity | JGI | N/A | IEA |
| GO:0016787 | GO-mf | hydrolase activity | EnsemblGenomes | N/A | IEA |
| GO:0016798 | GO-mf | hydrolase activity, acting on glycosyl bonds | EnsemblGenomes | N/A | IEA |
| GO:0102229 | GO-mf | amylopectin maltohydrolase activity | EnsemblGenomes | N/A | IEA |
| PF01373 | PFAM | Glycosyl hydrolase family 14 | JGI | N/A | IEA |
| GN7V-62110 | SoyCyc9-rxn | β-amylase | Plant Metabolic Network | ISS |
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Glyma.13g305300 not represented in the dataset |
Glyma.13g305300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g38120 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g305300.1 sequence-type=CDS polypeptide=Glyma.13g305300.1.p locus=Glyma.13g305300 ID=Glyma.13g305300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTGGGGCGGGTGAAGCTATACGTGTGGAGAGAGCAAGGAAGCCAAGAGCCACCCATGGCTTCAAATTGGACCGTGGCCTCCTCAAGAAACAACCGCGTGTTGGAGACCTTGTTTCAAATGGTTCAGGATTGCAAATTGAAGCTACAAGCTATAATGTCATTCCACAAATGTGGGGGGATTGGGGGAATGTGGGAGATTCCGTTTTGATTTCTCTCCCTAAATGGATACTTGAAATTGGAGAATTAGACCCTGATATCTTTTACACCAACCGCAAAGGTGTTAGGAACAAGGAATGTTTATCCCTCGGCGTGGACAACCAACCTTTGTTTCATGGACGAACTGCCATTGAGTTGTACACCGACTACATGCAAAGTTTCAAAGATAATATGGAAGATTTTCTTAAATCTGAGCTCATGATAGACATTGAAGTAGGACTTGGTCCAGCAGGAGAACTTAGATATCCCTCTTATACAAAAAATCTAGGGTGGGTATTTCCTGGTATTGGAGAATTTCAGTGCTATGACAAGTATCTTAAAGCTGATTTCAAAGAGGTAGCATTAAAGGCAGAATTTTTCAAATCAGGAGGAACTTATAAAACAGAGAAAGGGAAATTTTTTCTAACTTGGTATTCCAACAAGTTGCTGACCCATGGTGATGAAATTCTAAATAAAGCCAACAATGTATTCCTAGGTTGCAAAGTGAAGTTAGCAGCAAAAGTTGCTGGAATCCACTGGTGGTATAAAACAGAAAGTCATGCTGCAGAGCTTACTTCTGGCTATTACAACTTACATAATAGAGATGGATACAGACCTATAGCAAGGATTCTCTCCCGACACAATGCTATTTTAAATTTTACATGTCTTGAGATGAGAAATCATGAGCAACCAGCTAAAGCCAAGAGCGGAGCCCAAGAACTTGTTCAGCAAGTGCTCAGCGGTGGTTGGTTGGAGAGTCTTGAAGTTGCAGGGGAAAATGCACTTGCAAGATATGACCGTGAAGCTTACAATCAAATCCTTCTAAATGCTAGACCAAACGGTGTTAACAAATATGGTCCTCCAACACTAAAAATGTATGGTGTCACATACCTTCGTTTGTCAGATAAGTTAATGCAGCAAACAAACTTTAATATATTCAAAGCCTTTGTGAGAAAGATGCATGCTAATCTGGATTATTGTCCAGACCCAGAGAAGTACTATCATTTCACAGTACCTATGAAGCGATCAGAGCCCAAGATTCCACTAGAAGTTCTTCTTGAAGCAACCAAACCAGTGGAGCCTTATCCATGGAAGAAGGAAACAGATATGAACCTTGATGTTACTGGTTTTCTTGATTATATAGTTGCTATTATCGTACGTATATTCAAGCTAAAAGTAAACTAA
>Glyma.13g305300.1.p sequence-type=predicted peptide transcript=Glyma.13g305300.1 locus=Glyma.13g305300 ID=Glyma.13g305300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSGAGEAIRVERARKPRATHGFKLDRGLLKKQPRVGDLVSNGSGLQIEATSYNVIPQMWGDWGNVGDSVLISLPKWILEIGELDPDIFYTNRKGVRNKECLSLGVDNQPLFHGRTAIELYTDYMQSFKDNMEDFLKSELMIDIEVGLGPAGELRYPSYTKNLGWVFPGIGEFQCYDKYLKADFKEVALKAEFFKSGGTYKTEKGKFFLTWYSNKLLTHGDEILNKANNVFLGCKVKLAAKVAGIHWWYKTESHAAELTSGYYNLHNRDGYRPIARILSRHNAILNFTCLEMRNHEQPAKAKSGAQELVQQVLSGGWLESLEVAGENALARYDREAYNQILLNARPNGVNKYGPPTLKMYGVTYLRLSDKLMQQTNFNIFKAFVRKMHANLDYCPDPEKYYHFTVPMKRSEPKIPLEVLLEATKPVEPYPWKKETDMNLDVTGFLDYIVAIIVRIFKLKVN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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