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Report for Sequence Feature Glyma.13g296100

Feature Type:gene_model
Chromosome:Gm13
Start:39529215
stop:39530211
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g296100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G20970.1AT basic helix-loop-helix (bHLH) DNA-binding superfamily protein JGI N/AIEA
GO:0006357GO-bp regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0090575GO-cc RNA polymerase II transcription factor complex EnsemblGenomesN/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity EnsemblGenomesN/AIEA
GO:0046983GO-mf protein dimerization activity JGI N/AIEA
PF00010PFAM Helix-loop-helix DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.13g296100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g296100 not represented in the dataset
Glyma.13g296100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g296100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g37201 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g296100
>Glyma.13g296100.1 sequence-type=CDS polypeptide=Glyma.13g296100.1.p locus=Glyma.13g296100 ID=Glyma.13g296100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGATCATCAGCAGGGAGATCAACCTTCTTCAACCAAAGGGATCGAAAGAAGGATTGTAGAAAAAAACAGGAGAAACCATATGAAGAACCTCTGTTCCATGCTTAACTCTCTTCTCCCTAACAACAATAACACCAGGGGAAGAGAATTATCACGTGTTGATCAAATAGACGAGGCTATCAACTACATCAAGAACCTAGAGACAAAGGTGAAGATGGCGCAGGAGAAGAAAGAAAGCTTAATATTGCAAAGGAAAAGATCTCGCAGTGGCGGTTCGAGTAGTACTTCTGAAGCACCGAAGATTGAGATTCATGAAGTGGGTTCCTCGCTACAAATCATTCTGACGTGTGGGCTTGATAACCAGATCATTTTCAGTGAAATTATTCGTATACTGCAGGAAGAAAACATAGTGGTCAAGAGTGTCCATTCTTCATCATTCGCTGGAAACTCAATGTTGAATGTTGTGCATGCAGAAATTCAGCAATATTCATTTCTTCTAGAAACAACCGCAATGAGTATTGAGAAATTGAGAAGGATTGTGGACATGCATGGAGGAAATTTTTAG
Predicted protein sequences of Glyma.13g296100
>Glyma.13g296100.1.p sequence-type=predicted peptide transcript=Glyma.13g296100.1 locus=Glyma.13g296100 ID=Glyma.13g296100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADHQQGDQPSSTKGIERRIVEKNRRNHMKNLCSMLNSLLPNNNNTRGRELSRVDQIDEAINYIKNLETKVKMAQEKKESLILQRKRSRSGGSSSTSEAPKIEIHEVGSSLQIILTCGLDNQIIFSEIIRILQEENIVVKSVHSSSFAGNSMLNVVHAEIQQYSFLLETTAMSIEKLRRIVDMHGGNF*






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