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Report for Sequence Feature Glyma.13g294900

Feature Type:gene_model
Chromosome:Gm13
Start:39424826
stop:39427503
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g294900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G53970.1AT Tyrosine transaminase family protein JGI N/AIEA
GO:0006520GO-bp cellular amino acid metabolic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process EnsemblGenomesN/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008483GO-mf transaminase activity EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding EnsemblGenomesN/AIEA
GO:0030170GO-mf pyridoxal phosphate binding JGI N/AIEA
KOG0259 KOG Tyrosine aminotransferase JGI N/AIEA
PTHR11751Panther SUBGROUP I AMINOTRANSFERASE RELATED JGI N/AIEA
PTHR11751:SF28Panther TYROSINE AMINOTRANSFERASE JGI N/AIEA
PF00155PFAM Aminotransferase class I and II JGI N/AIEA
PWY-5912SoyCyc9 2'-deoxymugineic acid phytosiderophore biosynthesis Plant Metabolic Network ISS
GN7V-57080SoyCyc9-rxn nicotianamine aminotransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.13g294900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.13g294900 not represented in the dataset
Glyma.13g294900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.13g294900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g37071 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g294900
>Glyma.13g294900.1 sequence-type=CDS polypeptide=Glyma.13g294900.1.p locus=Glyma.13g294900 ID=Glyma.13g294900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAATGGAAGTGAGAAGTGGAATTTTCAGGGGAACAAGAAGCTAAATGCTTCATCCATTTCTGTGAGAGGGGCATATAACATGTTGATGGAGAGAGTCAACAATAGCCGAGACAAGAAACCTTTGAGAGAAAATTTGGTGAAGTTCTTGAATCTCATGTGGTATTATTTTAAAGCCAATAAAAGTAAGATAAGCAACTCTATCATGGTTGTATCATTGGAGATGCTCTTTAGTAATAATTACAGGGCTATTGCAAATTATCTCTCTTCTGATCTTCCATACCAGTTATCACCAGAGAATGTTTTTCTCACCATTGGTGGCACACAAGCTATAGATATAATCTTACCTGTCCTTGCACGTCCTGGTGCCAACATTCTCCTTCCAAGACCCGGGTACCCGCAATATGATTCTCGTGCTAGTTGTTGTTGGGAGGTTGACCTTGATTCCCTTGAAGTTCTAGCAGATGAAAACTCAGTGGCCACTGTCCTCATCAATTCTAGCAATCCATGTGGAAGTGTGTTCACATACCAACATTTAGAAAGGGAACACACACATAGTCTTGTTGCTGAAATTTCTAGGAAACTTGGAATCTTTGTAATTTCTGATGAAATCTATGCCCCTGTAACTTATGGAAACAATCCATTTGTTCCCATGGGGGTGTTTTCTTCAATAGTCCCGGTCATTACAATTGGATCTTTATCAAAGAGATGGTTAGTTCCTGGTTGGAGAACTGGCTGGATAGCCACATGTGACCCTCATGGAATTTTTCAGAAAACTGGGGTTGTGAAAAAAATCATCAGTTATTTGGAGATCACAATTGACCCTCCAACCTTCTTGCAGGCAGCAATACCTGAAATCCTTGGCAAAACAAAAGATGAGTTCCTTTCAAAGAATCTTAATATATTGAGGGGGGCTGCAAACATATTCTATGATTTATGTAAGGAGATCCTTTGCTTAACATGCCCTCACAAACCAGTAGGAGCAATGTGTGTCATGGTAGAGATTAACTTTTCACAAATTAAGGACATTGTTGATGAGATGGATTTCTGTGCCAAGCTAGCTGAAGAGGAATCTGTCCTTCTTCCAGGTGTCACGGTTGGACTGAAAAATTGGCTTCGAATTAGTTTTGCTGTCCACACTTCTAATCTTGTAGAAGGCCTTAACAGGATAAAAGCATTTTGCCTTATATATGCAAAGATGCCACGAAGTTATGTCTCATGGTAG
Predicted protein sequences of Glyma.13g294900
>Glyma.13g294900.1.p sequence-type=predicted peptide transcript=Glyma.13g294900.1 locus=Glyma.13g294900 ID=Glyma.13g294900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENGSEKWNFQGNKKLNASSISVRGAYNMLMERVNNSRDKKPLRENLVKFLNLMWYYFKANKSKISNSIMVVSLEMLFSNNYRAIANYLSSDLPYQLSPENVFLTIGGTQAIDIILPVLARPGANILLPRPGYPQYDSRASCCWEVDLDSLEVLADENSVATVLINSSNPCGSVFTYQHLEREHTHSLVAEISRKLGIFVISDEIYAPVTYGNNPFVPMGVFSSIVPVITIGSLSKRWLVPGWRTGWIATCDPHGIFQKTGVVKKIISYLEITIDPPTFLQAAIPEILGKTKDEFLSKNLNILRGAANIFYDLCKEILCLTCPHKPVGAMCVMVEINFSQIKDIVDEMDFCAKLAEEESVLLPGVTVGLKNWLRISFAVHTSNLVEGLNRIKAFCLIYAKMPRSYVSW*






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