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Report for Sequence Feature Glyma.13g293200

Feature Type:gene_model
Chromosome:Gm13
Start:39306388
stop:39308830
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g293200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G60860.1AT RAB GTPase homolog A1F JGI N/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction JGI N/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0005768GO-cc endosome EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0003924GO-mf GTPase activity JGI N/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG0087 KOG GTPase Rab11/YPT3, small G protein superfamily JGI N/AIEA
PTHR24073Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24073:SF213Panther JGI N/AIEA
PF00071PFAM Ras family JGI N/AIEA

Expression Patterns of Glyma.13g293200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g293200
ParalogEvidenceComments
Glyma.12g207900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g293200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g36910 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.13g293200
>Glyma.13g293200.1 sequence-type=CDS polypeptide=Glyma.13g293200.1.p locus=Glyma.13g293200 ID=Glyma.13g293200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCCGACGAAGACTACGACTACTTGTTCAAGCTGGTCCTCATCGGAGACTCCGGCGTCGGCAAGTCCAACCTCTTGTCCCGATTCACCCGAAACGAGTTCAGCTTGGAGACCAAATCCACCATCGGCGTCGAATTCGCCACTCGAAGTGTCCCCGTTGATAGCAAGCTCGTCAAGGCACAAATCTGGGACACTGCAGGCCAAGAAAGATATCGTGCAATTACAAGTGCATACTACCGAGGAGCCGTGGGTGCTTTGATCGTGTACGATGTAACCCGACACGTGACATTCGAGAACGTGGAGAGATGGTTGAAGGAGCTTCGGGATCACACAGAAGCATACGTTGTGGTCATGCTGGTGGGAAACAAAGCAGACCTTCGACATTTGCGTGCAGTGTCCACAGAAGAAGCCACAGAATATGCGGAGAAAGAGAACATCTACTTCATGGAAACCTCTGCCCTTGAGTCCCTGAACGTAGGCAATGCTTTCGTAGAAGTGCTGACTCAGATATACAACGTTGTGAGTAGGAAGACTCTTGAGACCATGGATGATGACCCTAATTCAAAAGCCTTACCCAAAGGGGAAACCATCGTTATTGGAACCAAAGATGATGATGTCTCAGCTGTTAAAAAGAGTGGATGCTGTTCCACATAG
Predicted protein sequences of Glyma.13g293200
>Glyma.13g293200.1.p sequence-type=predicted peptide transcript=Glyma.13g293200.1 locus=Glyma.13g293200 ID=Glyma.13g293200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGADEDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRSVPVDSKLVKAQIWDTAGQERYRAITSAYYRGAVGALIVYDVTRHVTFENVERWLKELRDHTEAYVVVMLVGNKADLRHLRAVSTEEATEYAEKENIYFMETSALESLNVGNAFVEVLTQIYNVVSRKTLETMDDDPNSKALPKGETIVIGTKDDDVSAVKKSGCCST*






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