Glyma.13g292500

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Report for Sequence Feature Glyma.13g292500

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39246473
stop:	39249825
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g292500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15030.1	AT	TCP family transcription factor 4	JGI	N/A	IEA
GO:0006351	GO-bp	transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0006355	GO-bp	regulation of transcription, DNA-templated	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0003677	GO-mf	DNA binding	EnsemblGenomes	N/A	IEA
PF03634	PFAM	TCP family transcription factor	JGI	N/A	IEA

Proteins Associated with Glyma.13g292500

Locus	Gene Symbol	Protein Name
	TCP41	Teosinte branched1 and cycloidea and proliferating cell factor family protein gene 41

Expression Patterns of Glyma.13g292500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g292500

Paralog	Evidence	Comments
Glyma.12g208800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g292500 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g36840	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.13g292500

Limit To All Plant Sequences

>Glyma.13g292500.2 sequence-type=transcript locus=Glyma.13g292500 ID=Glyma.13g292500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAAAAGCTGTTAGATGTCATTATCAAAGGCTTAAAAAGGTGTGGGTAGAAGAGATGGCCATTGAGAGTTACCTCTCTATCATCCATGACCTTAATCATAGATCATCACTAGCATCCATCTAAAGTTATTAAACAAAGTTTCAAGATGAGGAGAAAGTTGAGGGGCTGGTTAAACTCCAAGAGATGAGTTGGGGTTTGTGACAAGGCCTTATTATTATAAATTTTGCGTTTGTGGGGCTAAAAGATCTTTAATCTCTTCTCTGAGCACACTCTGCCTCTCTTTGCAGAAGCATCAACAAGCTCTCATAGGCCACAGGATTTGGTTTTTTGGGATCAGCAGCAGTGGCAGAAGCAGAAGCCTCAACAAGTAACCACAGTTGATAGTGTCAGGAACTAAGCAAAACCAAAGAGTACTACCAACTACCATACCAAAGTACCAATCTCAACAAAAACTACAAGAAACAACCCTTTAGAAGAGTAAAAGAAAAAAAGGAATCTGAATCTCACCCTATAGACACAAGAATAAAAAAAAGGAGAACAATTTTTTAGCATATAGAGTGGGGGTGTCAATTGTCATCACTCATCACACAAGGTGTGCAAACAGCGAAGGGGACTAAATTAACTATGCAGAAGGCACAATAGAAGAAACTGAGGAATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCTATTGACAAGCTTGCTGAGCTTCCTCCATGGCACCCTAATCCTAACACTACTGCTGCAGATGCCGAGaacaacaacaacaacaaTGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCCTGGTTTGATTCATCATGGCCAGTCCCAAGCAGGTGCAAATCAAACACCTTCCAATGACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTGTGACTTGGAACAGTGATGCAAGCACAGATATGAACAGAACCGGGTTCATGGTTAATTCACCATCAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCAATGGCTTCATCAGAACATCATCACAAGTCACAACAAGCTTCCATCTTTGGCAGCAGGTTTTTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGGGCCATGGAGTTGGTAACGACAGGCCATCATCTGCTTCTCCTAATTCTCATCACTGACCACAAACTTGAACTGCACAATACTGCACTGTTCCTTATCTATCAGGACAGGAGCATTGCCTACCAGACTTTAAAACGTGGGAAGATTAAGATGGACACATTTTGATGATCTACACAATTTTATCTGGTTGGATTCAGCTTTTATATGGCTTTCTTTCCCCCCTACTTATTGCAGCCATTTACATTGGGGCTTTATATATTTTTTAAGGAAAAGAGATATTTATGTATTATGCATTATATTTACCTGATACTTTGCTCATTTTATATATGGCTTTAAGCTGGATTATTCCGTGGTTGTATCCCGTATCGTTTCTTTAATGTCGAGAATAGCATAGTTCATCCAATATCAAGTGAACAGAAGAGGTTTCATGTCAATTCTTGGTGAACCCCACTTCAAGAAAAAATTGAATCTAGTATGGTTTTGATTTAGTTATTCTCCCCTGTAGTAGAAAGACATTTTGGTTTTGTATTTCTGCATCTGCTTCAATTTCAAGTAACACCATCAGGAAGGAACTACAGATGGCTTGTAATGTCTCAAATAATAGGCAAAGTTGTAAAATGTGATCGTGGTTGAGGTTTTGCAATGTTTGATATCTTAGAAAATTGCAGACAAATAAGACTAATACATTGTAAATAAGACTATAAATTGTAAATGTAGTCATGTAGTTGCAAAAAGTCCAAAAACCTTGATGTTAATGTTATAGCCACAATTATAAATGCGGGTACAATTGCTAGTACAATACATTGCAATTGTGGGCTATTTTTCCTAACCTTGGTAATATGGCAAGTTA

>Glyma.13g292500.3 sequence-type=transcript locus=Glyma.13g292500 ID=Glyma.13g292500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAGTTGGATCAGTCACAGAGTTCAATGTCCTATTGTAGTTTGTGTTTTTACCCCCCCTCCCAGTACAACCACCAGCCACTTCAAGTCATTGAAAGTTGAAATGAATCTGCATACTCTTCACAAATATTTTGGGATGCACACGTAAAGAAAGAAACATCAACTCCAACTCTAACAATCTACTAAAAAAATTTACTATGTCCTTTTACTCCCTTGTTTGTAGATAAAATCCAGACACGATTTGGTTTTTTGGGATCAGCAGCAGTGGCAGAAGCAGAAGCCTCAACAAGTAACCACAGTTGATAGTGTCAGGAACTAAGCAAAACCAAAGAGTACTACCAACTACCATACCAAAGTACCAATCTCAACAAAAACTACAAGAAACAACCCTTTAGAAGAGTAAAAGAAAAAAAGGAATCTGAATCTCACCCTATAGACACAAGAATAAAAAAAAGGAGAACAATTTTTTAGCATATAGAGTGGGGGTGTCAATTGTCATCACTCATCACACAAGGTGTGCAAACAGCGAAGGGGACTAAATTAACTATGCAGAAGGCACAATAGAAGAAACTGAGGAATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCTATTGACAAGCTTGCTGAGCTTCCTCCATGGCACCCTAATCCTAACACTACTGCTGCAGATGCCGAGaacaacaacaacaacaaTGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCCTGGTTTGATTCATCATGGCCAGTCCCAAGCAGGTGCAAATCAAACACCTTCCAATGACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTGTGACTTGGAACAGTGATGCAAGCACAGATATGAACAGAACCGGGTTCATGGTTAATTCACCATCAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCAATGGCTTCATCAGAACATCATCACAAGTCACAACAAGCTTCCATCTTTGGCAGCAGGTTTTTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGGGCCATGGAGTTGGTAACGACAGGCCATCATCTGCTTCTCCTAATTCTCATCACTGACCACAAACTTGAACTGCACAATACTGCACTGTTCCTTATCTATCAGGACAGGAGCATTGCCTACCAGACTTTAAAACGTGGGAAGATTAAGATGGACACATTTTGATGATCTACACAATTTTATCTGGTTGGATTCAGCTTTTATATGGCTTTCTTTCCCCCCTACTTATTGCAGCCATTTACATTGGGGCTTTATATATTTTTTAAGGAAAAGAGATATTTATGTATTATGCATTATATTTACCTGATACTTTGCTCATTTTATATATGGCTTTAAGCTGGATTATTCCGTGGTTGTATCCCGTATCGTTTCTTTAATGTCGAGAATAGCATAGTTCATCCAATATCAAGTGAACAGAAGAGGTTTCATGTCAATTCTTGGTGAACCCCACTTCAAGAAAAAATTGAATCTAGTATGGTTTTGATTTAGTTATTCTCCCCTGTAGTAGAAAGACATTTTGGTTTTGTATTTCTGCATCTGCTTCAATTTCAAGTAACACCATCAGGAAGGAACTACAGATGGCTTGTAATGTCTCAAATAATAGGCAAAGTTGTAAAATGTGATCGTGGTTGAGGTTTTGCAATGTTTGATATCTTAGAAAATTGCAGACAAATAAGACTAATACATTGTAAATAAGACTATAAATTGTAAATGTAGTCATGTAGTTGCAAAAAGTCCAAAAACCTTGATGTTAATGTTATAGCCACAATTATAAATGCGGGTACAATTGCTAGTACAATACATTGCAATTGTGGGCTATTTTTCCTAACCTTGGTAATATGGCAAGTTA

Coding sequences of Glyma.13g292500

Limit To All Plant Sequences

>Glyma.13g292500.1 sequence-type=CDS polypeptide=Glyma.13g292500.1.p locus=Glyma.13g292500 ID=Glyma.13g292500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCTATTGACAAGCTTGCTGAGCTTCCTCCATGGCACCCTAATCCTAACACTACTGCTGCAGATGCCGAGAACAACAACAACAACAATGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCCTGGTTTGATTCATCATGGCCAGTCCCAAGCAGGTGCAAATCAAACACCTTCCAATGACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTGTGACTTGGAACAGTGATGCAAGCACAGATATGAACAGAACCGGGTTCATGGTTAATTCACCATCAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCAATGGCTTCATCAGAACATCATCACAAGTCACAACAAGCTTCCATCTTTGGCAGCAGGTTTTTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGGGCCATGGAGTTGGTAACGACAGGCCATCATCTGCTTCTCCTAATTCTCATCACTGA

>Glyma.13g292500.2 sequence-type=CDS polypeptide=Glyma.13g292500.2.p locus=Glyma.13g292500 ID=Glyma.13g292500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCTATTGACAAGCTTGCTGAGCTTCCTCCATGGCACCCTAATCCTAACACTACTGCTGCAGATGCCGAGAACAACAACAACAACAATGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCCTGGTTTGATTCATCATGGCCAGTCCCAAGCAGGTGCAAATCAAACACCTTCCAATGACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTGTGACTTGGAACAGTGATGCAAGCACAGATATGAACAGAACCGGGTTCATGGTTAATTCACCATCAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCAATGGCTTCATCAGAACATCATCACAAGTCACAACAAGCTTCCATCTTTGGCAGCAGGTTTTTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGGGCCATGGAGTTGGTAACGACAGGCCATCATCTGCTTCTCCTAATTCTCATCACTGA

>Glyma.13g292500.3 sequence-type=CDS polypeptide=Glyma.13g292500.3.p locus=Glyma.13g292500 ID=Glyma.13g292500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCATGAAGAGCACTGGGGGAGAGATTGTTCAAGTCCAAGGAGGGCACATTGTTCGGTCCACAGGTAGAAAAGATAGGCACAGCAAGGTTTACACTGCAAAGGGTCCTCGTGATCGAAGGGTTAGGCTCTCAGCACACACTGCTATTCAGTTCTATGATGTTCAAGATCGTTTAGGCTATGATAGACCAAGCAAAGCCGTGGACTGGCTCATCAAGAAGGCCAAGAATGCTATTGACAAGCTTGCTGAGCTTCCTCCATGGCACCCTAATCCTAACACTACTGCTGCAGATGCCGAGAACAACAACAACAACAATGCAGGGTCAAGTGACATGGCCATTGCAGAACAATCAGAGTCTTCTGGTTACAATTTTCAGCTGCAAAGGCAATTAGGTGAGGACCATGATAACCACCACCATTCAGCTTTCATTCCTTCACCTATTGACACTGATGCAATAGCCTTCTTTCCCACAACCACTGCAACCTCCTCCATCAATTTCCAAACCTACCCTCCTGACATAATCTCAAGAACCAACAACTCCACTGAGGATCTTGGCCTTTCCCTTCACTCCTTCCAAGACCCTGGTTTGATTCATCATGGCCAGTCCCAAGCAGGTGCAAATCAAACACCTTCCAATGACCAAACCCTCTTCTCTGGCTCAACTCAAGTGGGGTTTGAAGCCAATTACCCCAGGATTGTGACTTGGAACAGTGATGCAAGCACAGATATGAACAGAACCGGGTTCATGGTTAATTCACCATCAGCACTTCTAGGCCAAGGTGGTTCTGCTGCGTATTCCCAAAGGGGGACCCTTCAGTCCAGTTTCTCACCATCACTTCGTCCTTGGAGTGACATTCCAATGGCTTCATCAGAACATCATCACAAGTCACAACAAGCTTCCATCTTTGGCAGCAGGTTTTTGTCTGATGCATTGCCAGGGTTCTGCATTCCTGCTAGAATCCAAGGAGAGGATGAGGGCCATGGAGTTGGTAACGACAGGCCATCATCTGCTTCTCCTAATTCTCATCACTGA

Predicted protein sequences of Glyma.13g292500

Limit To All Plant Sequences

>Glyma.13g292500.1.p sequence-type=predicted peptide transcript=Glyma.13g292500.1 locus=Glyma.13g292500 ID=Glyma.13g292500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPNPNTTAADAENNNNNNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHHSAFIPSPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHHGQSQAGANQTPSNDQTLFSGSTQVGFEANYPRIVTWNSDASTDMNRTGFMVNSPSALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSEHHHKSQQASIFGSRFLSDALPGFCIPARIQGEDEGHGVGNDRPSSASPNSHH*

>Glyma.13g292500.2.p sequence-type=predicted peptide transcript=Glyma.13g292500.2 locus=Glyma.13g292500 ID=Glyma.13g292500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPNPNTTAADAENNNNNNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHHSAFIPSPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHHGQSQAGANQTPSNDQTLFSGSTQVGFEANYPRIVTWNSDASTDMNRTGFMVNSPSALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSEHHHKSQQASIFGSRFLSDALPGFCIPARIQGEDEGHGVGNDRPSSASPNSHH*

>Glyma.13g292500.3.p sequence-type=predicted peptide transcript=Glyma.13g292500.3 locus=Glyma.13g292500 ID=Glyma.13g292500.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGMKSTGGEIVQVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKNAIDKLAELPPWHPNPNTTAADAENNNNNNAGSSDMAIAEQSESSGYNFQLQRQLGEDHDNHHHSAFIPSPIDTDAIAFFPTTTATSSINFQTYPPDIISRTNNSTEDLGLSLHSFQDPGLIHHGQSQAGANQTPSNDQTLFSGSTQVGFEANYPRIVTWNSDASTDMNRTGFMVNSPSALLGQGGSAAYSQRGTLQSSFSPSLRPWSDIPMASSEHHHKSQQASIFGSRFLSDALPGFCIPARIQGEDEGHGVGNDRPSSASPNSHH*

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