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Report for Sequence Feature Glyma.13g290900

Feature Type:gene_model
Chromosome:Gm13
Start:39120795
stop:39124124
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.13g290900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G42590.2AT general regulatory factor 9 JGI N/AIEA
AT2G42590.3AT general regulatory factor 9 JGI N/AIEA
GO:0019904GO-mf protein domain specific binding EnsemblGenomesN/AIEA
KOG0841 KOG Multifunctional chaperone (14-3-3 family) JGI N/AIEA
PTHR18860Panther 14-3-3 PROTEIN JGI N/AIEA
PF00244PFAM 14-3-3 protein JGI N/AIEA

Proteins Associated with Glyma.13g290900
LocusGene SymbolProtein Name
GF14D SGF14D
GF14q GF14 gene family gene q

Expression Patterns of Glyma.13g290900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.13g290900
ParalogEvidenceComments
Glyma.12g210400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g290900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma13g36690 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.13g290900
>Glyma.13g290900.2 sequence-type=transcript locus=Glyma.13g290900 ID=Glyma.13g290900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GACATTTCACAACCGCGTTCTTTTCTACGGAGCCTCGACCAAGAAGAATCGCagtgagaagaagagggggtcagagtgagaaagagaaagagagaATTCGTAAACCCTAATTTCGGAAAGATCGGCGATGACTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGGTGGAGGAGCGGAATTTGCTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGCAGAGCGTCCTGGAGGATCCTGTCTTCCATTGAGCAGAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGACAGAAGGTTGAATTGGAGCTATCGAACATCTGTAATGATGTTATGAGAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGCAGAGTGAGTCCGATGGATGATGGAATCTTCCATAGGATTCGATGCATGCGTTTGGGAATGAAACATGAGGGCCGATTACTTATCTGTGTATTAGCTAGAGATAGGGATTCTATTGTTTCCTCTTTGTTTCCTGTTGGATTGCCCAATACTTCCCGATAGGGGAAAGAGATACTCCATTTGTGCTATATTTATGGTATGTTTTTATTTGTGTGGTGTCTGGAAATGGCCTATTTCATTCCCAATCCGTTTCCTCCAGTCTCTGGGGGATTTGATTGATGAGAATTGCTTATGGTGGGTGTATTTCCTTTTCCAATGAAATGCTACAACATTTACTGCAATGTTGGAGATTGATTCTTCGATTGTTTAATCTTGACTTCCATTCTGACC
Coding sequences of Glyma.13g290900
>Glyma.13g290900.1 sequence-type=CDS polypeptide=Glyma.13g290900.1.p locus=Glyma.13g290900 ID=Glyma.13g290900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGGTGGAGGAGCGGAATTTGCTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGCAGAGCGTCCTGGAGGATCCTGTCTTCCATTGAGCAGAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGACAGAAGGTTGAATTGGAGCTATCGAACATCTGTAATGATGTTATGAGAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGCAGAGTGA

>Glyma.13g290900.2 sequence-type=CDS polypeptide=Glyma.13g290900.2.p locus=Glyma.13g290900 ID=Glyma.13g290900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTGCCTCCAAGGATCGCGAGAACTTCGTCTACATCGCCAAACTCGCCGAGCAGGCCGAGCGTTACGAAGAGATGGTGGAATCAATGAAGAACGTTGCGAATCTCGACGTTGAACTGACGGTGGAGGAGCGGAATTTGCTTTCTGTTGGGTACAAGAATGTGATTGGTGCTCGCAGAGCGTCCTGGAGGATCCTGTCTTCCATTGAGCAGAAGGAAGAAACAAAAGGGAACGAGTTGAATGCGAAGCGGATTAAGGAGTACAGACAGAAGGTTGAATTGGAGCTATCGAACATCTGTAATGATGTTATGAGAGTGATTGATGAGCACCTTATCCCTTCGGCTGCAGCTGGTGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCGCTGCAGCAGAGGCTGATTTACCTCCCACACATCCCATCCGATTGGGTCTAGCTTTAAATTTCTCTGTTTTCTATTATGAGATCTTGAACTCCCCTGAAAGAGCCTGTCATCTTGCGAAGCAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAACTTCTCAGGGACAACCTAACTTTGTGGACTTCTGACATCCCAGAAGATGGAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGGTGAGGATGCAGAGTGA
Predicted protein sequences of Glyma.13g290900
>Glyma.13g290900.1.p sequence-type=predicted peptide transcript=Glyma.13g290900.1 locus=Glyma.13g290900 ID=Glyma.13g290900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTASKDRENFVYIAKLAEQAERYEEMVESMKNVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMRVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKSGNEKKEAADQSMKAYESATAAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDAQKVNGTAKLGGGEDAE*

>Glyma.13g290900.2.p sequence-type=predicted peptide transcript=Glyma.13g290900.2 locus=Glyma.13g290900 ID=Glyma.13g290900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTASKDRENFVYIAKLAEQAERYEEMVESMKNVANLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMRVIDEHLIPSAAAGESTVFYYKMKGDYYRYLAEFKSGNEKKEAADQSMKAYESATAAAEADLPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGDAQKVNGTAKLGGGEDAE*






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