Glyma.13g290700

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Report for Sequence Feature Glyma.13g290700

Feature Type:	gene_model
Chromosome:	Gm13
Start:	39106079
stop:	39112900
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.13g290700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G53310.1	AT	phosphoenolpyruvate carboxylase 1	JGI	N/A	IEA
GO:0006099	GO-bp	tricarboxylic acid cycle	EnsemblGenomes	N/A	IEA
GO:0006099	GO-bp	tricarboxylic acid cycle	JGI	N/A	IEA
GO:0015977	GO-bp	carbon fixation	EnsemblGenomes	N/A	IEA
GO:0015977	GO-bp	carbon fixation	JGI	N/A	IEA
GO:0048366	GO-bp	leaf development	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0009507	GO-cc	chloroplast	EnsemblGenomes	N/A	IEA
GO:0048046	GO-cc	apoplast	EnsemblGenomes	N/A	IEA
GO:0003824	GO-mf	catalytic activity	EnsemblGenomes	N/A	IEA
GO:0008964	GO-mf	phosphoenolpyruvate carboxylase activity	EnsemblGenomes	N/A	IEA
GO:0008964	GO-mf	phosphoenolpyruvate carboxylase activity	JGI	N/A	IEA
PF00311	PFAM	Phosphoenolpyruvate carboxylase	JGI	N/A	IEA
PWY-6549	SoyCyc9	L-glutamine biosynthesis III	Plant Metabolic Network		ISS
PWYQT-4429	SoyCyc9	CO₂ fixation into oxaloacetate (anaplerotic)	Plant Metabolic Network		ISS
GN7V-42875	SoyCyc9-rxn	phosphoenolpyruvate carboxylase	Plant Metabolic Network		ISS

Proteins Associated with Glyma.13g290700

Locus	Gene Symbol	Protein Name
	PEPC10	Phosphoenolpyruvate carboxylase 10 gene
	PEPC2	phosphoenolpyruvate carboxylase 2-like
	PEPC10	Phosphoenolpyruvate carboxylase gene 10
	PEPC10	Phosphoenolpyruvate carboxylase

Expression Patterns of Glyma.13g290700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.13g290700

Paralog	Evidence	Comments
Glyma.12g210600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.13g290700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma13g36670	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.13g290700

Limit To All Plant Sequences

>Glyma.13g290700.1 sequence-type=CDS polypeptide=Glyma.13g290700.1.p locus=Glyma.13g290700 ID=Glyma.13g290700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTGCTCGTAACATCGAGAAGATGGCCTCAATTGATGCTCAGTTGAGGTTGCTGGCACCACGCAAGGTGTCTGATGATGACAAACTCGTTGAGTATGATGCTTTGTTGTTGGACCGCTTCCTTGACATTCTTCAGGATTTGCATGGTGAAGATATCAGACAAACGGTCCAAGATTGTTATGAGCTGTCAGCTGAGTACGAAGGAGAGCATAAGCCTGATAAGTTGGAGGAACTTGGGAATATGCTGACTGGTCTTGATGCTGGGGATTCAATTGTTATTGCCAAGTCATTTTCTCACATGCTCAATTTGGCCAACTTGGCAGAAGAAGTTCAAATTGCGTACCGAAGAAGGATCAAGTTGCTGAAGAAGGGTGATTTTGCTGATGAGAACTCTGCCATTACTGAGTCAGACATTGAAGAGACCTTCAAGAAGCTTGTGGCTCAACTGAAGAAGACACCCCAGGAAATCTTTGATGCTTTGAAGAACCAAACTGTGGATTTGGTCCTAACTGCTCATCCTACTCAGTCTGTTCGCAGATCGTTGCTGCAAAAGCATGGAAGACTAATTATTTCTGTTGGTGATCATTCTCTTCAGGATAAAGGAATTTGTTTGACACAATTATATGCTAAGGACATTACACCAGATGATAAGCAGGAACTTGATGAGGCTTTACAAAGAGAGATTCAAGCTGCATTTCGCACGGATGAAATTCGAAGGACTCCTCCTACCCCACAAGATGAGATGAGGGCAGGAATGAGCTACTTTCATGAGACAATTTGGAAAGGTGTACCACAGTTTCTGCGTCGGGTAGATACAGCTCTGAAGAACATTGGAATTAATGAACGTGTCCCATATAATGCTCCTGTTATTCAGTTCTCTTCTTGGATGGGAGGAGATCGTGATGGTAATCCTAGAGTAACCCCTGAAGTTACCAGGGATGTGTGTTTGCTGGCTAGAATGATGGCTGCTAATGTGTACTTCTCTCAGATAGAAGATCTCATGTTTGAGTTGTCTATGTGGCGTTGCACTGACGAGCTCCGTGATCGTGCTCATGAACTCCATAGGTCCTCAAAGAGAGATGCAAAACATTACATTGAGTTTTGGAAACAGGTTCCTCCAAATGAGCCATATCGTGTTATTCTTGGTGATGTCCGAGACAAACTGTATAACACACGGGAACGTGCTCGCCAATTATTAGCCAATGGGACCTCTGATATCCCCGAGGAGACAACTTTCACTTACGTTGAGCAGTTCCTGGAGCCTCTTGAACAATGCTATAGATCACTCTGTGCCTGTGGTGACAGACCTATAGCAGATGGAAGCCTCCTTGATTTCCTGCGGCAAGTTTCGACATTTGGACTCTCACTTGTGAGACTTGACATCCGTCAAGAGTCAGATAGGCACACTGATGTCATGGATGCAATCACAAAACACTTAGAGATCGGATCATACCGAGAGTGGCCCGAGGAAAAGAGGCAGGAGTGGCTCTTATCTGAACTACGTGGAAAACGCCCTCTCTTTGGCCATGACCTTCCCAAAACAGAAGAAATCAATGATGTTTTGGAAACCTTCCATGTCATTTCAGAACTTCCCTCAGACAACTTCGGTGCCTACATCATATCAATGGCAACAGCCCCATCTGATGTGCTTGCTGTTGAGCTCTTACAACGCGAGTGCCATGTGAAGCAGCCTCTAAGGGTGGTGCCACTGTTTGAAAAGCTTGCTGATCTTGAGGCTGCTCCGGCTGCTGTGGCGCGGCTTTTCTCGATAGATTGGTACAGAGACCGCATCAATGGGAAGCAAGAAGTTATGATAGGGTACTCAGACTCGGGAAAAGATGCTGGCCGTCTTTCTGCGGCTTGGGCGCTTTACAAGGCTCAAGAAGAACTTGTGAAGGTTGCTAAGGAGTATGGTGTTAAACTTACAATGTTTCATGGGAGGGGAGGGACTGTTGGAAGAGGAGGAGGTCCAACTCATCTTGCTATATTGTCTCAGCCACCAGACACCATCCATGGCTCACTTCGGGTGACGGTTCAGGGTGAAGTCATTGAGCAGTCTTTTGGAGAGGAGCACTTGTGCTTTAGGACACTTCAGAGGTTCACTGCAGCTACACTTGAGCATGGAATGCATCCTCCTGTGTCACCGAAACCAGAATGGCGCGCCCTCATGGACGAGATGGCTGTCATTGCAACAAAGGAGTATCGCTCTGTTGTTTTCAAAGAGCCTCGTTTTGTTGAATATTTCAGATGTGCAACTCCTGAGTTGGAGTATGGAAGAATGAACATTGGCAGTCGTCCATCAAAGCGAAAGCCAAGTGGAGGAATTGAATCACTACGTGCTATTCCTTGGATTTTTGCATGGACACAAACGAGGTTTCATTTGCCAGTGTGGCTTGGTTTTGGGTCAGCATTTAAGCATGTAGTTGAGAAAGATCCAAAGAATCTCCAAATGCTTCAGGACATGTACAATCAATGGCCTTTCTTCAGGGTCACCCTTGACTTGGTTGAGATGGTGTTCGCCAAGGGAGACCCCGGGATTGCATCCCTATTTGACAAACTCCTAGTATCAGAAGAGCTGCGTCCATTTGGAGAGAATTTAAGATCTAAATTCGAAGAAACAAAGAGGTTTCTCCTCCAGGTTGCTGGGCACAAGGATATTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTTCGTCTTCGTGACTCATACATCACAACCCTCAATGTGTTGCAAGCCTACACATTGAAGCGGATCCGTGATCCTGACTACCATGTGAAGTTGAGGCCACACTTGTCAAAGGACTACATGGAATCAAGCAAGCCAGCAGCAGAGCTTGTTAAACTTAACCCCAAAAGCGAGTATGCTCCTGGTCTTGAGGACACCCTTATTTTGACAATGAAGGGTATTGCTGCTGGCATGCAAAATACAGGTTAA

Predicted protein sequences of Glyma.13g290700

Limit To All Plant Sequences

>Glyma.13g290700.1.p sequence-type=predicted peptide transcript=Glyma.13g290700.1 locus=Glyma.13g290700 ID=Glyma.13g290700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAARNIEKMASIDAQLRLLAPRKVSDDDKLVEYDALLLDRFLDILQDLHGEDIRQTVQDCYELSAEYEGEHKPDKLEELGNMLTGLDAGDSIVIAKSFSHMLNLANLAEEVQIAYRRRIKLLKKGDFADENSAITESDIEETFKKLVAQLKKTPQEIFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRLIISVGDHSLQDKGICLTQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPQFLRRVDTALKNIGINERVPYNAPVIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANVYFSQIEDLMFELSMWRCTDELRDRAHELHRSSKRDAKHYIEFWKQVPPNEPYRVILGDVRDKLYNTRERARQLLANGTSDIPEETTFTYVEQFLEPLEQCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYREWPEEKRQEWLLSELRGKRPLFGHDLPKTEEINDVLETFHVISELPSDNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYRDRINGKQEVMIGYSDSGKDAGRLSAAWALYKAQEELVKVAKEYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMHPPVSPKPEWRALMDEMAVIATKEYRSVVFKEPRFVEYFRCATPELEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGSAFKHVVEKDPKNLQMLQDMYNQWPFFRVTLDLVEMVFAKGDPGIASLFDKLLVSEELRPFGENLRSKFEETKRFLLQVAGHKDILEGDPYLKQRLRLRDSYITTLNVLQAYTLKRIRDPDYHVKLRPHLSKDYMESSKPAAELVKLNPKSEYAPGLEDTLILTMKGIAAGMQNTG*

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