SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G20660.1 | AT | organic cation/carnitine transporter4 | JGI | N/A | IEA |
| GO:0015711 | GO-bp | organic anion transport | EnsemblGenomes | N/A | IEA |
| GO:0055085 | GO-bp | transmembrane transport | EnsemblGenomes | N/A | IEA |
| GO:0055085 | GO-bp | transmembrane transport | JGI | N/A | IEA |
| GO:0009705 | GO-cc | plant-type vacuole membrane | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0005215 | GO-mf | transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0008514 | GO-mf | organic anion transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0022857 | GO-mf | transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| GO:0022857 | GO-mf | transmembrane transporter activity | JGI | N/A | IEA |
| KOG0255 | KOG | Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) | JGI | N/A | IEA |
| PTHR24064 | Panther | FAMILY NOT NAMED | JGI | N/A | IEA |
| PTHR24064:SF41 | Panther | JGI | N/A | IEA | |
| PF00083 | PFAM | Sugar (and other) transporter | JGI | N/A | IEA |
|
Glyma.13g284900 not represented in the dataset |
Glyma.13g284900 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.12g216300 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma13g36070 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.13g284900.1 sequence-type=CDS polypeptide=Glyma.13g284900.1.p locus=Glyma.13g284900 ID=Glyma.13g284900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCGCCACATTCCCTTCCTCCGACATCCACGACCTCCGCTCGCCGATGCTACCAGCGGCGGCGGTGGCGGCGAAGAAGCCGGCGATGGAGAAGCTCTGCATCGACGACATGCTGCAGAAACACTGCGGCGAGTTCGGGCGGTGGCAGCTCAAGCACTTCATCCTCACCAGCCTCGCGTGGGCGCTCGAGGCCTTTCACACCATGGTCATGATCTTCGCCGACCGCGAACCGGACTGGAAGTGCGTCGCCGGCGCCGCCTGCGACGGCGGCGACTTGTGCGGTCTCTCGCCGGAGTCGAGGGAGTGGATCGGCGGCCGCGGCGGCTCCACGGTTTCCGATTGGGGTTTGATTTGCGGAGATAAGTTTAAGGTTGGATTGGTGCAGGCTGTTTTCTTCTTTGGCTGCATGATTGGTGCTGGAACATTTGGCCACCTCTCAGACTCCTCTTTAGGAAGGAAAGGCTCTCTCACAGTGGTTTGTGCCCTAAACACCATCTTCGGCTGCTTAACAGCCCTGTCCCCAAACTACTGGATCTACGTCCTCCTCCGCCTCCTCACCGGCTTCAGCAGCGGTGGCGTCGGCCTCACTGCCTTCGTCCTTGCCACCGAACCAATCGGCCCAACCAAACGTGGTGCAGCGGGTATGTCCACCTTCTACTTCTTCTCCGGTGGCATTGCACTTCTCTCAGGCATCGCCTACATCTTCCAAACATGGCGCTATCTATACATAGCTTCCTCCATCCCCTCCTTCCTCTACATCATCCTTGTCCTTCCCTTTATCTCCGAGTCTCCAAGATGGTACCTCATTCGTGGCAAAGTTACCGAAGCCATGAAACTCATGTCCACCATTGCTTCTTCCAATGGTAAACACCTTCCTGATGGTGTTCTCCTTGCACTTGACAACGAAACATCGCCCACAACAAACCAAGGTTCAGGCTATGACATAACAGAAATCATGACTTACAAAAACGAAAACAAAGATGCACTTATTGGGTCCATCATAGACGTGGTTTGTTCACCCATCACTCGTATGAGGTTGTTCATTGCGGTGGCTCTTAATTTCCTAGCCTCTGTGGTGTACTATGGGCTTAGTTTAAACGTCATGAACCTGGAAACCAACCTTTACGTGAACGTGATGCTGAACTCGGTGGCGGAGATGCCAGCCTTTACGATAACGGCGGTGCTTCTGGACCGGTTTGGACGGAAGCCATTGACGGTGGCAACGATGTGGTTCAGTGGGTTCTTTTGCTTGATGGGGAGTTTGGTGAGCAACGTTGGGGTGTGGAAGGTGGTGAGAATGGTGTGTGGTGTTTTGGGGATATTTGGGATGGCGGGGACTTATAATTTGCTGTTTATTTACACGGCGGAGCTGTTTCCGACAGTGGTGAGGAACGCCGCGCTCGGGTGTACTACTCAAGCGGCGCAAATGGGAGCGATATTGGCGCCGTTTGTGGTCGTTTTGGGAGGGTATTTGCCGTTTGCGGTGTTTGCAGCATGTGGGATAGTGGGAGGGATGTTTGCGTTTAATCTTCCCGAGACTCTAAACCAACCTCTCTATGATACATTTGGTGGACTGGAAGCTGGACTTGCTTGA
>Glyma.13g284900.1.p sequence-type=predicted peptide transcript=Glyma.13g284900.1 locus=Glyma.13g284900 ID=Glyma.13g284900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAATFPSSDIHDLRSPMLPAAAVAAKKPAMEKLCIDDMLQKHCGEFGRWQLKHFILTSLAWALEAFHTMVMIFADREPDWKCVAGAACDGGDLCGLSPESREWIGGRGGSTVSDWGLICGDKFKVGLVQAVFFFGCMIGAGTFGHLSDSSLGRKGSLTVVCALNTIFGCLTALSPNYWIYVLLRLLTGFSSGGVGLTAFVLATEPIGPTKRGAAGMSTFYFFSGGIALLSGIAYIFQTWRYLYIASSIPSFLYIILVLPFISESPRWYLIRGKVTEAMKLMSTIASSNGKHLPDGVLLALDNETSPTTNQGSGYDITEIMTYKNENKDALIGSIIDVVCSPITRMRLFIAVALNFLASVVYYGLSLNVMNLETNLYVNVMLNSVAEMPAFTITAVLLDRFGRKPLTVATMWFSGFFCLMGSLVSNVGVWKVVRMVCGVLGIFGMAGTYNLLFIYTAELFPTVVRNAALGCTTQAAQMGAILAPFVVVLGGYLPFAVFAACGIVGGMFAFNLPETLNQPLYDTFGGLEAGLA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
